Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Forward (+)

27417684 .. 27420762

Gene Structure 3079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAAGCATCACATTTTCTACAAAGCAGGAGCTTTGTAACAACCACCCTGGCTCAACCAAGGTATGTACATGAACACAAGGTACGGCGTTGTTCGATCGTCGCGGTGCTTACAACGCCGGCGGAGAACATGAACATAGCAACAGACGCAAGACCGGCAGATGCTGCAGTAGAAGGGAAGAGAGTTTACAAAGATAACTGGTTCGACCGAATGGCCATTAATCATCTGTCTCAGAATGTCCAGGCTGCAACAGGGTTGAGAAACAATAGGAGCGGGTATGAAAGCTTGGTGGAGGCAGCAACGGCTGCATCCAGGAAGTTTAATCCAGCAAAACAGAGAGAACTAGTTCTTCAAGCTCTTGATACTGCCTTCCCAAAGCCAGTATTTTCCTTGCTTAGAACAATCCTACCTGAATCAAAATTTGCCAGGGAATACTTCGCAGTCTTCACCACCATCTTCTTTGCCTGGTTGGTGGGACCCTGTGAGGTAAAGGAATCGGAGCTCAATGGAAGAAAAGAGAAAAATGTAGTATACATCAAGAAGTGCAGGTTTTTAGAGGAAACCAATTGTGTAGGGATGTGCCTTAATATGTGCAAGGTGCCATCTCAAAGCTTCATCAAGACTTCCCTTGGAATTCCTGTCAACATGGTTCCAAATTTTGATGATATGAGCTGTGAGATGATATTTGGTCAGGATCCTCCAGACATATCCAACGATCCAGCACTCAAGCAACCATGCTACAAACTATGTAATGCTTCAAACATTGATCACTTTACTCGGTTGTATTACCTACGTACCCTAATATCCAGCATCATATATCTCATGCATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

278

Amino Acids

31.45

Weight (kDa)

8.81

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	156 - 237	7.9e-35	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	104, 122, 273
AclWI	GGATC	3 cut(s)	689, 702, 710
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	419, 633, 655
AfaI	GTAC	3 cut(s)	69, 84, 796
AgsI	TTSAA	2 cut(s)	353, 759
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	5 cut(s)	48, 240, 311, 425, 464
AluBI	AGCT	6 cut(s)	33, 285, 356, 502, 612, 672
AluI	AGCT	6 cut(s)	33, 285, 356, 502, 612, 672
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	689, 702, 710
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	4 cut(s)	164, 245, 296, 305
ApoI	RAATTY	3 cut(s)	419, 633, 655
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	778, 811
BalI	TGGCCA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	151, 232, 292, 308
BccI	CCATC	2 cut(s)	461, 610
BceAI	ACGGC	2 cut(s)	101, 318
BciT130I	CCWGG	5 cut(s)	50, 242, 313, 427, 466
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	4 cut(s)	165, 246, 297, 306
BlsI	GCNGC	4 cut(s)	166, 247, 298, 307
Bme1390I	CCNGG	5 cut(s)	50, 242, 313, 427, 466
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	5 cut(s)	477, 478, 600, 651, 696
BmrFI	CCNGG	5 cut(s)	50, 242, 313, 427, 466
BmsI	GCATC	4 cut(s)	17, 151, 317, 819
BpiI	GAAGAC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	710
BsaAI	YACGTR	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	48, 59, 426, 628
Bse118I	RCCGGY	2 cut(s)	118, 154
Bse1I	ACTGG	2 cut(s)	203, 380
BseBI	CCWGG	5 cut(s)	50, 242, 313, 427, 466
BseDI	CCNNGG	4 cut(s)	48, 59, 426, 628
BseGI	GGATG	2 cut(s)	308, 582
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	203, 380
BseXI	GCAGC	4 cut(s)	151, 232, 292, 308
BsgI	GTGCAG	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	2 cut(s)	99, 208
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	598
BsiEI	CGRYCG	2 cut(s)	99, 208
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	119, 155
BslFI	GGGAC	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	96, 694, 715, 766
BspACI	CCGC	3 cut(s)	104, 122, 273
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	5 cut(s)	477, 478, 600, 651, 696
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	3 cut(s)	689, 702, 710
BspT107I	GGYRCC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	273
BsrFI	RCCGGY	2 cut(s)	118, 154
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	203, 380
BssAI	RCCGGY	2 cut(s)	118, 154
BssECI	CCNNGG	4 cut(s)	48, 59, 426, 628
BssMI	GATC	4 cut(s)	96, 694, 715, 766
BssNAI	GTATAC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	59, 628
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	5 cut(s)	50, 242, 313, 427, 466
Bst6I	CTCTTC	1 cut(s)	173
BstAPI	GCANNNNNTGC	2 cut(s)	164, 305
BstAUI	TGTACA	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	231, 395
BstF5I	GGATG	2 cut(s)	308, 582
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	4 cut(s)	99, 697, 718, 769
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	4 cut(s)	96, 694, 715, 766
BstMCI	CGRYCG	2 cut(s)	99, 208
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 146, 155, 164, 302, 305
BstNI	CCWGG	5 cut(s)	50, 242, 313, 427, 466
BstSCI	CCNGG	5 cut(s)	48, 240, 311, 425, 464
BstSFI	CTRYAG	1 cut(s)	165
BstSNI	TACGTA	1 cut(s)	794
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	151, 232, 292, 308
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	308, 582
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	118, 154
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	68, 83, 795
CviAII	CATG	5 cut(s)	71, 130, 646, 735, 823
CviQI	GTAC	3 cut(s)	68, 83, 795
DdeI	CTNAG	2 cut(s)	231, 395
DpnI	GATC	4 cut(s)	98, 696, 717, 768
DpnII	GATC	4 cut(s)	96, 694, 715, 766
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	502
Eco105I	TACGTA	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	59, 628
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	5 cut(s)	48, 240, 311, 425, 464
EcoT14I	CCWWGG	2 cut(s)	59, 628
EcoT22I	ATGCAT	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	59, 628
FaeI	CATG	5 cut(s)	74, 133, 649, 738, 826
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	5 cut(s)	70, 129, 645, 734, 822
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	4 cut(s)	165, 246, 297, 306
FokI	GGATG	2 cut(s)	295, 589
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	4 cut(s)	165, 246, 297, 306
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	165, 246, 297, 306
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	119, 155
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	5 cut(s)	74, 133, 649, 738, 826
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	2 cut(s)	283, 610
HinfI	GANTC	2 cut(s)	413, 494
HpaII	CCGG	2 cut(s)	119, 155
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	3 cut(s)	187, 532, 643
Hpy188I	TCNGA	2 cut(s)	234, 499
Hpy188III	TCNNGA	5 cut(s)	359, 538, 619, 692, 701
Hpy8I	GTNNAC	3 cut(s)	187, 532, 643
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	167, 379
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	6 cut(s)	167, 248, 308, 546, 594, 826
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 146, 155, 164, 302, 305
HpyF3I	CTNAG	2 cut(s)	231, 395
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	5 cut(s)	74, 133, 649, 738, 826
KflI	GGGWCCC	1 cut(s)	476
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	96, 694, 715, 766
LmnI	GCTCC	3 cut(s)	30, 270, 499
Lsp1109I	GCAGC	4 cut(s)	151, 232, 292, 308
LweI	GCATC	4 cut(s)	17, 151, 317, 819
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	98, 696, 717, 768
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	4 cut(s)	96, 694, 715, 766
MboII	GAAGA	5 cut(s)	190, 341, 436, 448, 522
MfeI	CAATTG	1 cut(s)	565
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	4 cut(s)	419, 565, 633, 655
MluNI	TGGCCA	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	4 cut(s)	286, 478, 550, 708
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	1 cut(s)	828
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	3 cut(s)	219, 321, 585
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	2 cut(s)	119, 155
MspR9I	CCNGG	5 cut(s)	50, 242, 313, 427, 466
MunI	CAATTG	1 cut(s)	565
MvaI	CCWGG	5 cut(s)	50, 242, 313, 427, 466
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	6 cut(s)	115, 146, 155, 164, 302, 305
NaeI	GCCGGC	1 cut(s)	120
NdeII	GATC	4 cut(s)	96, 694, 715, 766
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	74, 133, 649, 738, 826
NlaIV	GGNNCC	5 cut(s)	477, 478, 600, 651, 696
NsiI	ATGCAT	1 cut(s)	828
PdiI	GCCGGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	413, 494
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	166, 247, 298, 307
Ple19I	CGATCG	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	794
PpuMI	RGGWCCY	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	5 cut(s)	48, 240, 311, 425, 464
PspGI	CCWGG	5 cut(s)	48, 240, 311, 425, 464
PspN4I	GGNNCC	5 cut(s)	477, 478, 600, 651, 696
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	3 cut(s)	69, 84, 796
RsaNI	GTAC	3 cut(s)	68, 83, 795
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	219, 321, 585
SatI	GCNGC	4 cut(s)	165, 246, 297, 306
Sau3AI	GATC	4 cut(s)	96, 694, 715, 766
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	5 cut(s)	50, 242, 313, 427, 466
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	4 cut(s)	17, 151, 317, 819
SfcI	CTRYAG	1 cut(s)	165
SgrAI	CRCCGGYG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	794
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	4 cut(s)	419, 565, 633, 655
SsiI	CCGC	3 cut(s)	104, 122, 273
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	5 cut(s)	48, 240, 311, 425, 464
StyI	CCWWGG	2 cut(s)	59, 628
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	2 cut(s)	95, 204
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	419, 565, 633, 655
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	413, 494
Tru1I	TTAA	3 cut(s)	219, 321, 585
Tru9I	TTAA	3 cut(s)	219, 321, 585
TseI	GCWGC	4 cut(s)	164, 245, 296, 305
TspDTI	ATGAA	4 cut(s)	87, 146, 294, 604
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	3 cut(s)	419, 633, 655
XmiI	GTMKAC	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.