Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Reverse (-)

29395971 .. 29396608

Gene Structure 638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGTTTCTCTCTGCTCTCGTCGTCGACGGTTTCTCGAGCTCTATCACCAGACGTGGATATGCGGCGGGTTCGCAAGGAGTTGCGTCGAGCGTGGTGAGAGGAGGAGGTGCTGCTACTCCCAGAAGCGTAAACGTGGCGAAGAAGAATTCCGGTGAGGAAAAGGTGGGCTCCACCTTCAAGGTCTCGTGGGTCCCCGACCCAAAAACCGGGGTTTACGGACCCGAGAACGGCGCCGAGAAGATCGACGCTGCCGAGCTGCGCGCGGCGCTCTTGAAGAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

103

Amino Acids

10.54

Weight (kDa)

10.07

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	1 - 101	3.1e-30	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	285, 287
AciI	CCGC	3 cut(s)	86, 89, 287
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	230, 251
AgsI	TTSAA	2 cut(s)	202, 298
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	63, 280
AluI	AGCT	2 cut(s)	63, 280
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	211
Ama87I	CYCGRG	2 cut(s)	58, 245
ApeKI	GCWGC	3 cut(s)	134, 272, 280
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	4 cut(s)	257, 285, 287, 292
AspS9I	GGNCC	2 cut(s)	214, 242
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	61, 130, 188
AvaI	CYCGRG	2 cut(s)	58, 245
AvaII	GGWCC	2 cut(s)	214, 242
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	65, 194
BauI	CACGAG	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	121, 259, 267
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	211
BfoI	RGCGCY	2 cut(s)	258, 293
BisI	GCNGC	5 cut(s)	87, 135, 273, 281, 288
BlsI	GCNGC	5 cut(s)	88, 136, 274, 282, 289
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	214, 242
BmeT110I	CYCGRG	2 cut(s)	58, 245
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	214, 242
BmiI	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
BmrFI	CCNGG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 251
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	230, 251
BsePI	GCGCGC	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	138, 141
BseXI	GCAGC	3 cut(s)	121, 259, 267
Bsh1236I	CGCG	2 cut(s)	285, 287
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	58, 245
BsiSI	CCGG	2 cut(s)	174, 231
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	230, 251
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	58, 245
Bsp1286I	GDGCHC	2 cut(s)	65, 194
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	86, 89, 287
BspFNI	CGCG	2 cut(s)	285, 287
BspLI	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	231
BssHII	GCGCGC	1 cut(s)	283
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	285, 287
BstH2I	RGCGCY	2 cut(s)	258, 293
BstHHI	GCGC	4 cut(s)	257, 285, 287, 292
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	2 cut(s)	285, 287
BstV1I	GCAGC	3 cut(s)	121, 259, 267
BtrI	CACGTC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	4 cut(s)	257, 285, 287, 292
Cfr13I	GGNCC	2 cut(s)	214, 242
CseI	GACGC	2 cut(s)	96, 278
CviJI	RGCY	4 cut(s)	5, 63, 192, 280
CviKI_1	RGCY	4 cut(s)	5, 63, 192, 280
DdeI	CTNAG	1 cut(s)	24
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 194
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	214, 242
Eco53kI	GAGCTC	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	58, 245
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	65, 194
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
FaiI	YATR	1 cut(s)	84
FaqI	GGGAC	1 cut(s)	200
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	87, 135, 273, 281, 288
FriOI	GRGCYC	2 cut(s)	65, 194
Fsp4HI	GCNGC	5 cut(s)	87, 135, 273, 281, 288
GlaI	GCGC	4 cut(s)	256, 284, 286, 291
GluI	GCNGC	5 cut(s)	87, 135, 273, 281, 288
HaeII	RGCGCY	2 cut(s)	258, 293
HapII	CCGG	2 cut(s)	174, 231
HgaI	GACGC	2 cut(s)	96, 278
HhaI	GCGC	4 cut(s)	257, 285, 287, 292
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	4 cut(s)	255, 283, 285, 290
HinP1I	GCGC	4 cut(s)	255, 283, 285, 290
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	174, 231
HphI	GGTGA	3 cut(s)	61, 130, 188
Hpy166II	GTNNAC	3 cut(s)	49, 154, 238
Hpy188III	TCNNGA	2 cut(s)	58, 295
Hpy8I	GTNNAC	3 cut(s)	49, 154, 238
Hpy99I	CGWCG	5 cut(s)	47, 50, 53, 112, 272
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	76, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	76, 156
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	4 cut(s)	255, 283, 285, 290
KasI	GGCGCC	1 cut(s)	254
KflI	GGGWCCC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	85, 157, 187, 244
Lsp1109I	GCAGC	3 cut(s)	121, 259, 267
MaeII	ACGT	2 cut(s)	76, 156
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	3 cut(s)	175, 178, 274
MhlI	GDGCHC	2 cut(s)	65, 194
MluCI	AATT	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	116, 119, 122, 172
MseI	TTAA	1 cut(s)	307
MspI	CCGG	2 cut(s)	174, 231
MspR9I	CCNGG	1 cut(s)	232
MteI	GCGCNGCGC	1 cut(s)	288
MvnI	CGCG	2 cut(s)	285, 287
MwoI	GCNNNNNNNGC	1 cut(s)	289
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	1 cut(s)	264
NlaIV	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
NmeAIII	GCCGAG	2 cut(s)	283, 301
PaeR7I	CTCGAG	1 cut(s)	58
PauI	GCGCGC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	88, 136, 274, 282, 289
PluTI	GGCGCC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
PspPI	GGNCC	2 cut(s)	214, 242
PspPPI	RGGWCCY	1 cut(s)	214
PteI	GCGCGC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	5 cut(s)	87, 135, 273, 281, 288
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	214, 242
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	65, 194
SetI	ASST	8 cut(s)	65, 79, 133, 159, 189, 200, 207, 282
SfoI	GGCGCC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	58
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	214, 242
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	86, 89, 287
SspDI	GGCGCC	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	79, 159
TaqI	TCGA	4 cut(s)	48, 59, 110, 267
TasI	AATT	1 cut(s)	169
TauI	GCSGC	2 cut(s)	89, 290
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseI	GCWGC	3 cut(s)	134, 272, 280
TspGWI	ACGGA	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	214, 242
XapI	RAATTY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.