Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012652

Orthogroup ID

OG0010286

Physical Location & Seq

Genomic Coordinates Reverse (-)

70029 .. 70292

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12652g00070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTATCAAGATGCTATCAATCTTTTCGATGAGATGAGATCGAAAGACTACACTCGCAACGCTTTCACTTTCCAATTGGTTCTATCTATTTGCGATCGAGCTGAATTTGTTGATGATGCTTGTCGTATCTTCCATTCAATGTCCCGTGTGTACAAAGTTAAGGTGTCTGAGGAACAATATTCTCTAATCATTGGACTTCTTGATCGTTTTGGCCGCGTTGAGGAGGCTCGAAGATTTAGAAAATGGAGTTCGTCTCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 Pkinase

Protein Analysis

88

Amino Acids

10.41

Weight (kDa)

7.78

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71460
fragaria_vesca	FvH4_7g09420 FvH4_7g09420 FvH4_7g09420
malus_domestica	MD07G1098200.v1.1
prunus_persica	Prupe.2G122200_v2.0.a1
pyrus_communis	pycom07g08080 pycom12652g00070 pycom12652g00080
rosa_chinensis	RchiOBHm_Chr1g0346071
rosa_laevigata	RLG00000028816
rosa_multiflora	Rmu_sc0009190.1_g000001 Rmu_ssc0000255.1_g000072
rosa_roxburghii	Rroxscaffold_4G00308840
rosa_rugosa	Rorug01G0177800
rosa_samantha	Rh1AG197300 Rh1BG162500 Rh1CG182300 Rh1DG193000
rosa_wichuraiana	Rw1G016350 Rw1G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	138
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	38, 94, 202
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	150
BssMI	GATC	3 cut(s)	38, 94, 202
BstAUI	TGTACA	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	41, 97, 205
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	38, 94, 202
BstMCI	CGRYCG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	3 cut(s)	101, 213, 227
CviKI_1	RGCY	3 cut(s)	101, 213, 227
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	40, 96, 204
DpnII	GATC	3 cut(s)	38, 94, 202
EaeI	YGGCCR	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	8, 200
Hpy8I	GTNNAC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	38, 94, 202
LweI	GCATC	1 cut(s)	106
MalI	GATC	3 cut(s)	40, 96, 204
MboI	GATC	3 cut(s)	38, 94, 202
MboII	GAAGA	2 cut(s)	121, 243
MfeI	CAATTG	1 cut(s)	74
MluCI	AATT	2 cut(s)	74, 104
MnlI	CCTC	3 cut(s)	163, 214, 217
MseI	TTAA	1 cut(s)	159
MunI	CAATTG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	216
NdeII	GATC	3 cut(s)	38, 94, 202
PkrI	GCNGC	1 cut(s)	215
Ple19I	CGATCG	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	38, 94, 202
SetI	ASST	2 cut(s)	103, 165
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	9 cut(s)	20, 66, 110, 132, 156, 158, 212, 227, 240
Sse9I	AATT	2 cut(s)	74, 104
SsiI	CCGC	1 cut(s)	214
SspI	AATATT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	27, 41, 97, 229
TasI	AATT	2 cut(s)	74, 104
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.