Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009190.1

Orthogroup ID

OG0010286

Physical Location & Seq

Genomic Coordinates Reverse (-)

1845 .. 3696

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009190.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgtattgcaagtgcggtgacatggagatgggaagacgggtgttttatagttcaatggagaggaatgcgatttgttggactgctttgatgtcgggttatgctgcaaatgggaggcctgagcaggcattgaggtcagtcatttggatgcagcaagaagggtttaagccggatgttgtcacggttgccactgtccttccggtttgtgcagagttgaaggatttgaaacgagggaaggagattcatgcttatgctgtgaagaattgcttcttgcccaatgtatctattatttcttctttaatggtcatgtactctaagtgtggcgtcttggagtattctataagattatttgatggtatggagcagagaaatgttattacgtggacagccatgatagattcccatctcgaaaatgggtgcctagatgaggcacttggtgtcataaggtcaatgcttttgtcaaagcacaggccagattcggttgcaatgtcaaggatgttggctatttgcgggggactaaagaatttgaagcttgggaaggaaatccatgcacaagttttgaaaaagaattttgagtctgtccattttgtttctgctgaactagtgaaaatgtatgggcactgtggagcaattgatcatgcgaagtcatttttcgatacaattccagtcaagggttcaatgacatggactgcaattatagaagcttatggatatgctggcatgtatcaagaagctattagtctttttgatcagatgagatctaatgacttcactccaaacaatttcactttccaagtggttctatctatttgtgaccgagctgaatttgttgatgatgcttgccgtatcttccatttgatgtctcgtagatataaaaccagggtactgtatatcctagtgtacaataagtttctgcatcaaatcctgagggattggaagatatctgacttcccaagtgattttttgtttagagccattactgctgctgcacaggtgaaattgaaggatcagcaaaagaagcaggaagagagatcaaccaagtgtttgggacaacttcgattgacacttccagaaagaattgaggaccactctaacatgtctagaggcattgattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 Pkinase

Protein Analysis

371

Amino Acids

42.37

Weight (kDa)

8.72

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71460
fragaria_vesca	FvH4_7g09420 FvH4_7g09420 FvH4_7g09420
malus_domestica	MD07G1098200.v1.1
prunus_persica	Prupe.2G122200_v2.0.a1
pyrus_communis	pycom07g08080 pycom12652g00070 pycom12652g00080
rosa_chinensis	RchiOBHm_Chr1g0346071
rosa_laevigata	RLG00000028816
rosa_multiflora	Rmu_sc0009190.1_g000001 Rmu_ssc0000255.1_g000072
rosa_roxburghii	Rroxscaffold_4G00308840
rosa_rugosa	Rorug01G0177800
rosa_samantha	Rh1AG197300 Rh1BG162500 Rh1CG182300 Rh1DG193000
rosa_wichuraiana	Rw1G016350 Rw1G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AciI	CCGC	2 cut(s)	15, 507
AclWI	GGATC	1 cut(s)	1011
AcsI	RAATTY	3 cut(s)	520, 565, 821
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	308, 882, 899
AfiI	CCNNNNNNNGG	2 cut(s)	424, 668
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	7 cut(s)	54, 214, 223, 526, 559, 675, 1000
AhlI	ACTAGT	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	875
AluBI	AGCT	4 cut(s)	529, 701, 731, 818
AluI	AGCT	4 cut(s)	529, 701, 731, 818
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	1 cut(s)	1011
AoxI	GGCC	2 cut(s)	113, 467
ApeKI	GCWGC	4 cut(s)	101, 148, 980, 983
ApoI	RAATTY	3 cut(s)	520, 565, 821
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	1081
AsuHPI	GGTGA	2 cut(s)	29, 1003
AvaII	GGWCC	1 cut(s)	1081
AxyI	CCTNAGG	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	4 cut(s)	88, 160, 967, 970
BccI	CCATC	3 cut(s)	22, 344, 408
BceAI	ACGGC	1 cut(s)	825
BciT130I	CCWGG	1 cut(s)	877
BclI	TGATCA	2 cut(s)	631, 745
BcoDI	GTCTC	1 cut(s)	864
BcuI	ACTAGT	1 cut(s)	598
BfaI	CTAG	4 cut(s)	419, 599, 893, 1098
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	4 cut(s)	102, 149, 981, 984
BlsI	GCNGC	4 cut(s)	103, 150, 982, 985
Bme1390I	CCNGG	1 cut(s)	877
Bme18I	GGWCC	1 cut(s)	1081
BmgT120I	GGNCC	1 cut(s)	1081
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	877
BmsI	GCATC	3 cut(s)	135, 823, 922
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	1070, 1102
Bpu10I	CCTNAGC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	876
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 668
Bse1I	ACTGG	1 cut(s)	662
Bse21I	CCTNAGG	1 cut(s)	923
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	877
BseDI	CCNNGG	1 cut(s)	876
BseGI	GGATG	3 cut(s)	150, 175, 498
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	424, 668
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	108, 914
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	4 cut(s)	88, 160, 967, 970
BsgI	GTGCAG	2 cut(s)	225, 969
BshFI	GGCC	2 cut(s)	115, 469
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	167, 197
BslFI	GGGAC	2 cut(s)	525, 1059
BslI	CCNNNNNNNGG	2 cut(s)	424, 668
BsmAI	GTCTC	1 cut(s)	864
BsmFI	GGGAC	2 cut(s)	525, 1059
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	115, 469
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	5 cut(s)	631, 745, 755, 1003, 1028
BspACI	CCGC	2 cut(s)	15, 507
BspANI	GGCC	2 cut(s)	115, 469
BspCNI	CTCAG	2 cut(s)	109, 915
BspLI	GGNNCC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	1011
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	897
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	876
BssMI	GATC	5 cut(s)	631, 745, 755, 1003, 1028
BssNI	GRCGYC	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	877
Bst4CI	ACNGT	4 cut(s)	181, 190, 620, 885
Bst6I	CTCTTC	1 cut(s)	1017
BstACI	GRCGYC	1 cut(s)	321
BstAUI	TGTACA	1 cut(s)	897
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	123, 715, 838
BstDEI	CTNAG	3 cut(s)	117, 312, 923
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	150, 175, 498
BstKTI	GATC	5 cut(s)	634, 748, 758, 1006, 1031
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	5 cut(s)	631, 745, 755, 1003, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	977, 1015
BstNI	CCWGG	1 cut(s)	877
BstNSI	RCATGY	2 cut(s)	721, 1096
BstSCI	CCNGG	1 cut(s)	875
BstSLI	GKGCMC	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	88, 160, 967, 970
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	755
BstXI	CCANNNNNNTGG	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	755
Bsu36I	CCTNAGG	1 cut(s)	923
BsuRI	GGCC	2 cut(s)	115, 469
BtsCI	GGATG	3 cut(s)	150, 175, 498
BtsIMutI	CAGTG	2 cut(s)	186, 616
Cac8I	GCNNGC	3 cut(s)	123, 715, 838
Cfr13I	GGNCC	1 cut(s)	1081
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	307, 881, 898
CviAII	CATG	9 cut(s)	22, 242, 304, 388, 545, 635, 681, 718, 1093
CviQI	GTAC	3 cut(s)	307, 881, 898
DdeI	CTNAG	3 cut(s)	117, 312, 923
DpnI	GATC	5 cut(s)	633, 747, 757, 1005, 1030
DpnII	GATC	5 cut(s)	631, 745, 755, 1003, 1028
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	1081
Eco81I	CCTNAGG	1 cut(s)	923
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	875
EcoRV	GATATC	1 cut(s)	939
FaeI	CATG	9 cut(s)	25, 245, 307, 391, 548, 638, 684, 721, 1096
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	525, 1059
FatI	CATG	9 cut(s)	21, 241, 303, 387, 544, 634, 680, 717, 1092
FauI	CCCGC	1 cut(s)	500
FbaI	TGATCA	2 cut(s)	631, 745
Fnu4HI	GCNGC	4 cut(s)	102, 149, 981, 984
FokI	GGATG	3 cut(s)	157, 182, 505
Fsp4HI	GCNGC	4 cut(s)	102, 149, 981, 984
FspBI	CTAG	4 cut(s)	419, 599, 893, 1098
GluI	GCNGC	4 cut(s)	102, 149, 981, 984
HaeIII	GGCC	2 cut(s)	115, 469
HapII	CCGG	2 cut(s)	167, 197
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	9 cut(s)	25, 245, 307, 391, 548, 638, 684, 721, 1096
HindIII	AAGCTT	2 cut(s)	527, 699
HinfI	GANTC	5 cut(s)	238, 395, 473, 572, 1109
HpaII	CCGG	2 cut(s)	167, 197
HphI	GGTGA	2 cut(s)	29, 1003
Hpy166II	GTNNAC	2 cut(s)	381, 898
Hpy188I	TCNGA	2 cut(s)	750, 943
Hpy188III	TCNNGA	5 cut(s)	404, 725, 922, 1067, 1098
Hpy8I	GTNNAC	2 cut(s)	381, 898
HpyAV	CCTTC	6 cut(s)	149, 203, 208, 226, 529, 994
HpyCH4III	ACNGT	4 cut(s)	181, 190, 620, 885
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	9 cut(s)	9, 104, 148, 206, 482, 548, 689, 913, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	977, 1015
HpyF3I	CTNAG	3 cut(s)	117, 312, 923
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	9 cut(s)	25, 245, 307, 391, 548, 638, 684, 721, 1096
Ksp22I	TGATCA	2 cut(s)	631, 745
Kzo9I	GATC	5 cut(s)	631, 745, 755, 1003, 1028
LmnI	GCTCC	2 cut(s)	358, 623
Lsp1109I	GCAGC	4 cut(s)	88, 160, 967, 970
LweI	GCATC	3 cut(s)	135, 823, 922
MaeI	CTAG	4 cut(s)	419, 599, 893, 1098
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	17, 175, 809
MalI	GATC	5 cut(s)	633, 747, 757, 1005, 1030
MboI	GATC	5 cut(s)	631, 745, 755, 1003, 1028
MboII	GAAGA	6 cut(s)	45, 268, 282, 838, 946, 1034
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	8 cut(s)	54, 105, 123, 221, 418, 918, 1072, 1094
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	162, 296
MslI	CAYNNNNRTG	3 cut(s)	26, 143, 246
MspI	CCGG	2 cut(s)	167, 197
MspR9I	CCNGG	1 cut(s)	877
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	877
MwoI	GCNNNNNNNGC	2 cut(s)	977, 1015
NdeII	GATC	5 cut(s)	631, 745, 755, 1003, 1028
NlaIII	CATG	9 cut(s)	25, 245, 307, 391, 548, 638, 684, 721, 1096
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	3 cut(s)	17, 175, 809
NspI	RCATGY	2 cut(s)	721, 1096
PceI	AGGCCT	1 cut(s)	115
PciI	ACATGT	1 cut(s)	1092
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	238, 395, 473, 1109
PkrI	GCNGC	4 cut(s)	103, 150, 982, 985
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	378
PscI	ACATGT	1 cut(s)	1092
Psp6I	CCWGG	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	875
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	755
RsaI	GTAC	3 cut(s)	308, 882, 899
RsaNI	GTAC	3 cut(s)	307, 881, 898
RseI	CAYNNNNRTG	3 cut(s)	26, 143, 246
SaqAI	TTAA	2 cut(s)	162, 296
SatI	GCNGC	4 cut(s)	102, 149, 981, 984
Sau3AI	GATC	5 cut(s)	631, 745, 755, 1003, 1028
Sau96I	GGNCC	1 cut(s)	1081
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	877
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	8 cut(s)	134, 380, 446, 531, 703, 733, 820, 993
SfaNI	GCATC	3 cut(s)	135, 823, 922
SinI	GGWCC	1 cut(s)	1081
SmiMI	CAYNNNNRTG	3 cut(s)	26, 143, 246
SpeI	ACTAGT	1 cut(s)	598
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	15, 507
SspMI	CTAG	4 cut(s)	419, 599, 893, 1098
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	875
TaaI	ACNGT	4 cut(s)	181, 190, 620, 885
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	405, 651, 1054
TaqII	GACCGA	1 cut(s)	828
TatI	WGTACW	2 cut(s)	306, 897
TfiI	GAWTC	4 cut(s)	238, 395, 473, 1109
Tru1I	TTAA	2 cut(s)	162, 296
Tru9I	TTAA	2 cut(s)	162, 296
TscAI	CASTG	2 cut(s)	193, 623
TseFI	GTSAC	3 cut(s)	17, 175, 809
TseI	GCWGC	4 cut(s)	101, 148, 980, 983
Tsp45I	GTSAC	3 cut(s)	17, 175, 809
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	193, 623
VpaK11BI	GGWCC	1 cut(s)	1081
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	3 cut(s)	520, 565, 821
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	2 cut(s)	721, 1096
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	4 cut(s)	419, 599, 893, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.