Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G71460 |
| fragaria_vesca | FvH4_7g09420 FvH4_7g09420 FvH4_7g09420 |
| malus_domestica | MD07G1098200.v1.1 |
| prunus_persica | Prupe.2G122200_v2.0.a1 |
| pyrus_communis | pycom07g08080 pycom12652g00070 pycom12652g00080 |
| rosa_chinensis | RchiOBHm_Chr1g0346071 |
| rosa_laevigata | RLG00000028816 |
| rosa_multiflora | Rmu_sc0009190.1_g000001 Rmu_ssc0000255.1_g000072 |
| rosa_roxburghii | Rroxscaffold_4G00308840 |
| rosa_rugosa | Rorug01G0177800 |
| rosa_samantha | Rh1AG197300 Rh1BG162500 Rh1CG182300 Rh1DG193000 |
| rosa_wichuraiana | Rw1G016350 Rw1G016560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 855 |
| Acc65I | GGTACC | 1 cut(s) | 564 |
| AccB1I | GGYRCC | 3 cut(s) | 138, 564, 1473 |
| AccBSI | CCGCTC | 1 cut(s) | 193 |
| AccII | CGCG | 3 cut(s) | 242, 527, 787 |
| AclWI | GGATC | 1 cut(s) | 373 |
| AcoI | YGGCCR | 1 cut(s) | 1987 |
| AcsI | RAATTY | 6 cut(s) | 61, 155, 922, 1579, 1624, 1880 |
| AcuI | CTGAAG | 1 cut(s) | 1028 |
| AcyI | GRCGYC | 2 cut(s) | 139, 1380 |
| AdeI | CACNNNGTG | 1 cut(s) | 1493 |
| AfaI | GTAC | 7 cut(s) | 449, 515, 566, 758, 869, 1367, 1955 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 436, 956, 1483, 1727, 1996 |
| AflIII | ACRYGT | 3 cut(s) | 444, 510, 525 |
| AgsI | TTSAA | 9 cut(s) | 115, 763, 1027, 1273, 1282, 1585, 1618, 1734, 1970 |
| AhlI | ACTAGT | 2 cut(s) | 938, 1657 |
| AjnI | CCWGG | 1 cut(s) | 267 |
| Alw21I | GWGCWC | 1 cut(s) | 2027 |
| Alw26I | GTCTC | 4 cut(s) | 35, 575, 1923, 1945 |
| AlwI | GGATC | 1 cut(s) | 373 |
| Ama87I | CYCGRG | 1 cut(s) | 578 |
| AoxI | GGCC | 4 cut(s) | 264, 917, 1526, 1987 |
| ApeKI | GCWGC | 2 cut(s) | 1160, 1207 |
| ApoI | RAATTY | 6 cut(s) | 61, 155, 922, 1579, 1624, 1880 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1322 |
| Asp718I | GGTACC | 1 cut(s) | 564 |
| AspLEI | GCGC | 7 cut(s) | 141, 662, 670, 787, 789, 856, 994 |
| AspS9I | GGNCC | 2 cut(s) | 265, 289 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 8 cut(s) | 15, 64, 98, 250, 328, 451, 715, 1088 |
| AsuII | TTCGAA | 2 cut(s) | 159, 394 |
| AvaI | CYCGRG | 1 cut(s) | 578 |
| AvaII | GGWCC | 1 cut(s) | 289 |
| BaeGI | GKGCMC | 1 cut(s) | 1677 |
| BanI | GGYRCC | 3 cut(s) | 138, 564, 1473 |
| BanII | GRGCYC | 1 cut(s) | 2027 |
| BauI | CACGAG | 3 cut(s) | 352, 451, 517 |
| BbsI | GAAGAC | 2 cut(s) | 1016, 1099 |
| Bbv12I | GWGCWC | 1 cut(s) | 2027 |
| BbvI | GCAGC | 2 cut(s) | 1147, 1219 |
| BccI | CCATC | 4 cut(s) | 799, 892, 1081, 1403 |
| BceAI | ACGGC | 4 cut(s) | 152, 200, 313, 1884 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1173, 1207 |
| BciT130I | CCWGG | 1 cut(s) | 269 |
| BclI | TGATCA | 3 cut(s) | 642, 1690, 1804 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BcoDI | GTCTC | 4 cut(s) | 35, 575, 1923, 1945 |
| BcuI | ACTAGT | 2 cut(s) | 938, 1657 |
| BfaI | CTAG | 5 cut(s) | 501, 939, 1478, 1658, 1935 |
| BfoI | RGCGCY | 3 cut(s) | 142, 663, 671 |
| BglII | AGATCT | 1 cut(s) | 1814 |
| BisI | GCNGC | 4 cut(s) | 78, 1161, 1208, 1990 |
| BlsI | GCNGC | 4 cut(s) | 79, 1162, 1209, 1991 |
| BmcAI | AGTACT | 1 cut(s) | 1955 |
| Bme1390I | CCNGG | 2 cut(s) | 179, 269 |
| Bme18I | GGWCC | 1 cut(s) | 289 |
| BmeT110I | CYCGRG | 1 cut(s) | 578 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 289 |
| BmiI | GGNNCC | 3 cut(s) | 140, 566, 1475 |
| BmrFI | CCNGG | 2 cut(s) | 179, 269 |
| BmsI | GCATC | 3 cut(s) | 309, 463, 1194 |
| BpiI | GAAGAC | 2 cut(s) | 1016, 1099 |
| Bpu14I | TTCGAA | 2 cut(s) | 159, 394 |
| BpuEI | CTTGAG | 2 cut(s) | 1196, 1929 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| BsaAI | YACGTR | 1 cut(s) | 1437 |
| BsaHI | GRCGYC | 2 cut(s) | 139, 1380 |
| BsaI | GGTCTC | 1 cut(s) | 1945 |
| BsaJI | CCNNGG | 2 cut(s) | 261, 267 |
| BsaWI | WCCGGW | 1 cut(s) | 1255 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 436, 956, 1483, 1727, 1996 |
| Bse118I | RCCGGY | 1 cut(s) | 80 |
| Bse1I | ACTGG | 1 cut(s) | 1721 |
| Bse3DI | GCAATG | 1 cut(s) | 1548 |
| BseBI | CCWGG | 1 cut(s) | 269 |
| BseDI | CCNNGG | 2 cut(s) | 261, 267 |
| BseGI | GGATG | 7 cut(s) | 300, 823, 900, 910, 1209, 1234, 1557 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 436, 956, 1483, 1727, 1996 |
| BseMI | GCAATG | 1 cut(s) | 1548 |
| BseMII | CTCAG | 1 cut(s) | 2018 |
| BseNI | ACTGG | 1 cut(s) | 1721 |
| BsePI | GCGCGC | 1 cut(s) | 785 |
| BseRI | GAGGAG | 1 cut(s) | 815 |
| BseSI | GKGCMC | 1 cut(s) | 1677 |
| BseXI | GCAGC | 2 cut(s) | 1147, 1219 |
| BsgI | GTGCAG | 1 cut(s) | 1284 |
| Bsh1236I | CGCG | 3 cut(s) | 242, 527, 787 |
| Bsh1285I | CGRYCG | 1 cut(s) | 468 |
| BshFI | GGCC | 4 cut(s) | 266, 919, 1528, 1989 |
| BshNI | GGYRCC | 3 cut(s) | 138, 564, 1473 |
| BsiEI | CGRYCG | 1 cut(s) | 468 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2027 |
| BsiHKCI | CYCGRG | 1 cut(s) | 578 |
| BsiSI | CCGG | 5 cut(s) | 81, 179, 430, 1226, 1256 |
| BslFI | GGGAC | 3 cut(s) | 553, 751, 1584 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 436, 956, 1483, 1727, 1996 |
| BsmAI | GTCTC | 4 cut(s) | 35, 575, 1923, 1945 |
| BsmBI | CGTCTC | 1 cut(s) | 575 |
| BsmFI | GGGAC | 3 cut(s) | 553, 751, 1584 |
| BsmI | GAATGC | 1 cut(s) | 1129 |
| BsnI | GGCC | 4 cut(s) | 266, 919, 1528, 1989 |
| Bso31I | GGTCTC | 1 cut(s) | 1945 |
| BsoBI | CYCGRG | 1 cut(s) | 578 |
| Bsp119I | TTCGAA | 2 cut(s) | 159, 394 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1677, 2027 |
| Bsp1407I | TGTACA | 2 cut(s) | 447, 867 |
| Bsp143I | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| Bsp68I | TCGCGA | 1 cut(s) | 242 |
| BspANI | GGCC | 4 cut(s) | 266, 919, 1528, 1989 |
| BspCNI | CTCAG | 1 cut(s) | 2017 |
| BspFNI | CGCG | 3 cut(s) | 242, 527, 787 |
| BspLI | GGNNCC | 3 cut(s) | 140, 566, 1475 |
| BspPI | GGATC | 1 cut(s) | 373 |
| BspT104I | TTCGAA | 2 cut(s) | 159, 394 |
| BspT107I | GGYRCC | 3 cut(s) | 138, 564, 1473 |
| BspTNI | GGTCTC | 1 cut(s) | 1945 |
| BsrBI | CCGCTC | 1 cut(s) | 193 |
| BsrDI | GCAATG | 1 cut(s) | 1548 |
| BsrFI | RCCGGY | 1 cut(s) | 80 |
| BsrGI | TGTACA | 2 cut(s) | 447, 867 |
| BsrI | ACTGG | 1 cut(s) | 1721 |
| BssAI | RCCGGY | 1 cut(s) | 80 |
| BssECI | CCNNGG | 2 cut(s) | 261, 267 |
| BssHII | GCGCGC | 1 cut(s) | 785 |
| BssMI | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| BssNI | GRCGYC | 2 cut(s) | 139, 1380 |
| BssSI | CACGAG | 3 cut(s) | 352, 451, 517 |
| Bst2BI | CACGAG | 3 cut(s) | 352, 451, 517 |
| Bst2UI | CCWGG | 1 cut(s) | 269 |
| Bst4CI | ACNGT | 6 cut(s) | 544, 569, 1240, 1249, 1679, 1953 |
| BstACI | GRCGYC | 2 cut(s) | 139, 1380 |
| BstAUI | TGTACA | 2 cut(s) | 447, 867 |
| BstBAI | YACGTR | 1 cut(s) | 1437 |
| BstBI | TTCGAA | 2 cut(s) | 159, 394 |
| BstDEI | CTNAG | 3 cut(s) | 533, 1371, 2004 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| BstF5I | GGATG | 7 cut(s) | 300, 823, 900, 910, 1209, 1234, 1557 |
| BstFNI | CGCG | 3 cut(s) | 242, 527, 787 |
| BstH2I | RGCGCY | 3 cut(s) | 142, 663, 671 |
| BstHHI | GCGC | 7 cut(s) | 141, 662, 670, 787, 789, 856, 994 |
| BstKTI | GATC | 6 cut(s) | 381, 645, 1693, 1807, 1817, 1985 |
| BstMAI | GTCTC | 4 cut(s) | 35, 575, 1923, 1945 |
| BstMBI | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| BstMCI | CGRYCG | 1 cut(s) | 468 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 253, 657, 842, 851, 991 |
| BstNI | CCWGG | 1 cut(s) | 269 |
| BstNSI | RCATGY | 3 cut(s) | 448, 998, 1780 |
| BstSCI | CCNGG | 2 cut(s) | 177, 267 |
| BstSLI | GKGCMC | 1 cut(s) | 1677 |
| BstUI | CGCG | 3 cut(s) | 242, 527, 787 |
| BstV1I | GCAGC | 2 cut(s) | 1147, 1219 |
| BstV2I | GAAGAC | 2 cut(s) | 1016, 1099 |
| BstX2I | RGATCY | 2 cut(s) | 378, 1814 |
| BstYI | RGATCY | 2 cut(s) | 378, 1814 |
| BsuRI | GGCC | 4 cut(s) | 266, 919, 1528, 1989 |
| BtsCI | GGATG | 7 cut(s) | 300, 823, 900, 910, 1209, 1234, 1557 |
| BtsIMutI | CAGTG | 3 cut(s) | 1119, 1245, 1675 |
| BtuMI | TCGCGA | 1 cut(s) | 242 |
| CfoI | GCGC | 7 cut(s) | 141, 662, 670, 787, 789, 856, 994 |
| Cfr10I | RCCGGY | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 289 |
| CseI | GACGC | 4 cut(s) | 179, 334, 697, 1369 |
| Csp6I | GTAC | 7 cut(s) | 448, 514, 565, 757, 868, 1366, 1954 |
| CviQI | GTAC | 7 cut(s) | 448, 514, 565, 757, 868, 1366, 1954 |
| DdeI | CTNAG | 3 cut(s) | 533, 1371, 2004 |
| DinI | GGCGCC | 1 cut(s) | 140 |
| DpnI | GATC | 6 cut(s) | 380, 644, 1692, 1806, 1816, 1984 |
| DpnII | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| DraIII | CACNNNGTG | 1 cut(s) | 1493 |
| EaeI | YGGCCR | 1 cut(s) | 1987 |
| Ecl136II | GAGCTC | 1 cut(s) | 2025 |
| Eco24I | GRGCYC | 1 cut(s) | 2027 |
| Eco31I | GGTCTC | 1 cut(s) | 1945 |
| Eco47I | GGWCC | 1 cut(s) | 289 |
| Eco53kI | GAGCTC | 1 cut(s) | 2025 |
| Eco57I | CTGAAG | 1 cut(s) | 1028 |
| Eco88I | CYCGRG | 1 cut(s) | 578 |
| EcoICRI | GAGCTC | 1 cut(s) | 2025 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 265 |
| EcoRI | GAATTC | 1 cut(s) | 922 |
| EcoRII | CCWGG | 1 cut(s) | 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 2027 |
| EgeI | GGCGCC | 1 cut(s) | 140 |
| EheI | GGCGCC | 1 cut(s) | 140 |
| Esp3I | CGTCTC | 1 cut(s) | 575 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1307, 1339 |
| FaqI | GGGAC | 3 cut(s) | 553, 751, 1584 |
| FauI | CCCGC | 5 cut(s) | 63, 544, 649, 838, 1559 |
| FbaI | TGATCA | 3 cut(s) | 642, 1690, 1804 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 1161, 1208, 1990 |
| FokI | GGATG | 7 cut(s) | 287, 830, 907, 917, 1216, 1241, 1564 |
| FriOI | GRGCYC | 1 cut(s) | 2027 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 1161, 1208, 1990 |
| FspBI | CTAG | 5 cut(s) | 501, 939, 1478, 1658, 1935 |
| FspI | TGCGCA | 1 cut(s) | 855 |
| GlaI | GCGC | 7 cut(s) | 140, 661, 669, 786, 788, 855, 993 |
| GluI | GCNGC | 4 cut(s) | 78, 1161, 1208, 1990 |
| HaeII | RGCGCY | 3 cut(s) | 142, 663, 671 |
| HaeIII | GGCC | 4 cut(s) | 266, 919, 1528, 1989 |
| HapII | CCGG | 5 cut(s) | 81, 179, 430, 1226, 1256 |
| HgaI | GACGC | 4 cut(s) | 179, 334, 697, 1369 |
| HhaI | GCGC | 7 cut(s) | 141, 662, 670, 787, 789, 856, 994 |
| Hin1I | GRCGYC | 2 cut(s) | 139, 1380 |
| Hin6I | GCGC | 7 cut(s) | 139, 660, 668, 785, 787, 854, 992 |
| HinP1I | GCGC | 7 cut(s) | 139, 660, 668, 785, 787, 854, 992 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HindIII | AAGCTT | 6 cut(s) | 116, 779, 876, 977, 1586, 1758 |
| HinfI | GANTC | 9 cut(s) | 182, 237, 274, 396, 405, 1297, 1454, 1532, 1631 |
| HpaII | CCGG | 5 cut(s) | 81, 179, 430, 1226, 1256 |
| HphI | GGTGA | 8 cut(s) | 15, 64, 98, 250, 328, 451, 715, 1088 |
| Hpy166II | GTNNAC | 6 cut(s) | 220, 310, 442, 450, 514, 1440 |
| Hpy188I | TCNGA | 5 cut(s) | 153, 592, 1146, 1809, 2007 |
| Hpy188III | TCNNGA | 8 cut(s) | 132, 241, 278, 578, 580, 646, 1784, 1946 |
| Hpy8I | GTNNAC | 6 cut(s) | 220, 310, 442, 450, 514, 1440 |
| Hpy99I | CGWCG | 2 cut(s) | 138, 173 |
| HpyAV | CCTTC | 7 cut(s) | 121, 902, 1208, 1262, 1267, 1285, 1588 |
| HpyCH4III | ACNGT | 6 cut(s) | 544, 569, 1240, 1249, 1679, 1953 |
| HpyCH4IV | ACGT | 3 cut(s) | 510, 584, 1436 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 253, 657, 842, 851, 991 |
| HpyF3I | CTNAG | 3 cut(s) | 533, 1371, 2004 |
| HpySE526I | ACGT | 3 cut(s) | 510, 584, 1436 |
| Hsp92I | GRCGYC | 2 cut(s) | 139, 1380 |
| HspAI | GCGC | 7 cut(s) | 139, 660, 668, 785, 787, 854, 992 |
| KasI | GGCGCC | 1 cut(s) | 138 |
| KpnI | GGTACC | 1 cut(s) | 568 |
| KroI | GCCGGC | 1 cut(s) | 80 |
| KroNI | GCCGGC | 1 cut(s) | 82 |
| Ksp22I | TGATCA | 3 cut(s) | 642, 1690, 1804 |
| Kzo9I | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| LmnI | GCTCC | 5 cut(s) | 198, 833, 883, 1417, 1682 |
| Lsp1109I | GCAGC | 2 cut(s) | 1147, 1219 |
| LweI | GCATC | 3 cut(s) | 309, 463, 1194 |
| MaeI | CTAG | 5 cut(s) | 501, 939, 1478, 1658, 1935 |
| MaeII | ACGT | 3 cut(s) | 510, 584, 1436 |
| MaeIII | GTNAC | 5 cut(s) | 86, 186, 1076, 1234, 1868 |
| MalI | GATC | 6 cut(s) | 380, 644, 1692, 1806, 1816, 1984 |
| MbiI | CCGCTC | 1 cut(s) | 193 |
| MboI | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| MfeI | CAATTG | 1 cut(s) | 1686 |
| MflI | RGATCY | 2 cut(s) | 378, 1814 |
| MhlI | GDGCHC | 2 cut(s) | 1677, 2027 |
| MluI | ACGCGT | 1 cut(s) | 525 |
| Mly113I | GGCGCC | 1 cut(s) | 139 |
| MlyI | GAGTC | 3 cut(s) | 176, 399, 1640 |
| MmeI | TCCRAC | 2 cut(s) | 342, 1115 |
| MreI | CGCCGGCG | 1 cut(s) | 80 |
| MroNI | GCCGGC | 1 cut(s) | 80 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1322 |
| MseI | TTAA | 3 cut(s) | 777, 1221, 1355 |
| MslI | CAYNNNNRTG | 4 cut(s) | 999, 1085, 1202, 1305 |
| MspA1I | CMGCKG | 1 cut(s) | 1652 |
| MspI | CCGG | 5 cut(s) | 81, 179, 430, 1226, 1256 |
| MspR9I | CCNGG | 2 cut(s) | 179, 269 |
| MunI | CAATTG | 1 cut(s) | 1686 |
| Mva1269I | GAATGC | 1 cut(s) | 1129 |
| MvaI | CCWGG | 1 cut(s) | 269 |
| MvnI | CGCG | 3 cut(s) | 242, 527, 787 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 253, 657, 842, 851, 991 |
| NaeI | GCCGGC | 1 cut(s) | 82 |
| NarI | GGCGCC | 1 cut(s) | 139 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeII | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| NgoMIV | GCCGGC | 1 cut(s) | 80 |
| NlaIV | GGNNCC | 3 cut(s) | 140, 566, 1475 |
| NmuCI | GTSAC | 4 cut(s) | 86, 1076, 1234, 1868 |
| NruI | TCGCGA | 1 cut(s) | 242 |
| NsbI | TGCGCA | 1 cut(s) | 855 |
| NspI | RCATGY | 3 cut(s) | 448, 998, 1780 |
| NspV | TTCGAA | 2 cut(s) | 159, 394 |
| PaeI | GCATGC | 1 cut(s) | 998 |
| PaeR7I | CTCGAG | 1 cut(s) | 578 |
| PauI | GCGCGC | 1 cut(s) | 785 |
| PciI | ACATGT | 1 cut(s) | 444 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 139, 165, 303, 414, 465, 524 |
| PctI | GAATGC | 1 cut(s) | 1129 |
| PdiI | GCCGGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1322 |
| PfeI | GAWTC | 6 cut(s) | 237, 274, 396, 1297, 1454, 1532 |
| PfoI | TCCNGGA | 1 cut(s) | 177 |
| PkrI | GCNGC | 4 cut(s) | 79, 1162, 1209, 1991 |
| PleI | GAGTC | 3 cut(s) | 176, 399, 1639 |
| PluTI | GGCGCC | 1 cut(s) | 142 |
| PpsI | GAGTC | 3 cut(s) | 176, 399, 1639 |
| Ppu21I | YACGTR | 1 cut(s) | 1437 |
| PscI | ACATGT | 1 cut(s) | 444 |
| Psp124BI | GAGCTC | 1 cut(s) | 2027 |
| Psp6I | CCWGG | 1 cut(s) | 267 |
| PspGI | CCWGG | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 3 cut(s) | 140, 566, 1475 |
| PspPI | GGNCC | 2 cut(s) | 265, 289 |
| PsuI | RGATCY | 2 cut(s) | 378, 1814 |
| PteI | GCGCGC | 1 cut(s) | 785 |
| RruI | TCGCGA | 1 cut(s) | 242 |
| RsaI | GTAC | 7 cut(s) | 449, 515, 566, 758, 869, 1367, 1955 |
| RsaNI | GTAC | 7 cut(s) | 448, 514, 565, 757, 868, 1366, 1954 |
| RseI | CAYNNNNRTG | 4 cut(s) | 999, 1085, 1202, 1305 |
| SacI | GAGCTC | 1 cut(s) | 2027 |
| SaqAI | TTAA | 3 cut(s) | 777, 1221, 1355 |
| SatI | GCNGC | 4 cut(s) | 78, 1161, 1208, 1990 |
| Sau3AI | GATC | 6 cut(s) | 378, 642, 1690, 1804, 1814, 1982 |
| Sau96I | GGNCC | 2 cut(s) | 265, 289 |
| ScaI | AGTACT | 1 cut(s) | 1955 |
| SchI | GAGTC | 3 cut(s) | 176, 399, 1640 |
| ScrFI | CCNGG | 2 cut(s) | 179, 269 |
| SduI | GDGCHC | 2 cut(s) | 1677, 2027 |
| SfaNI | GCATC | 3 cut(s) | 309, 463, 1194 |
| SfoI | GGCGCC | 1 cut(s) | 140 |
| Sfr274I | CTCGAG | 1 cut(s) | 578 |
| SfuI | TTCGAA | 2 cut(s) | 159, 394 |
| SgrAI | CRCCGGYG | 1 cut(s) | 80 |
| SinI | GGWCC | 1 cut(s) | 289 |
| SlaI | CTCGAG | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 999, 1085, 1202, 1305 |
| SmlI | CTYRAG | 3 cut(s) | 578, 1175, 1944 |
| SmoI | CTYRAG | 3 cut(s) | 578, 1175, 1944 |
| SpeI | ACTAGT | 2 cut(s) | 938, 1657 |
| SphI | GCATGC | 1 cut(s) | 998 |
| SspDI | GGCGCC | 1 cut(s) | 138 |
| SspMI | CTAG | 5 cut(s) | 501, 939, 1478, 1658, 1935 |
| SstI | GAGCTC | 1 cut(s) | 2027 |
| StyD4I | CCNGG | 2 cut(s) | 177, 267 |
| TaaI | ACNGT | 6 cut(s) | 544, 569, 1240, 1249, 1679, 1953 |
| TaiI | ACGT | 3 cut(s) | 513, 587, 1439 |
| TaqI | TCGA | 9 cut(s) | 159, 394, 408, 468, 489, 579, 1464, 1710, 1981 |
| TaqII | GACCGA | 2 cut(s) | 454, 1183 |
| TatI | WGTACW | 6 cut(s) | 447, 513, 756, 867, 1365, 1953 |
| TauI | GCSGC | 2 cut(s) | 80, 1992 |
| TfiI | GAWTC | 6 cut(s) | 237, 274, 396, 1297, 1454, 1532 |
| Tru1I | TTAA | 3 cut(s) | 777, 1221, 1355 |
| Tru9I | TTAA | 3 cut(s) | 777, 1221, 1355 |
| TscAI | CASTG | 3 cut(s) | 1119, 1252, 1682 |
| TseFI | GTSAC | 4 cut(s) | 86, 1076, 1234, 1868 |
| TseI | GCWGC | 2 cut(s) | 1160, 1207 |
| Tsp45I | GTSAC | 4 cut(s) | 86, 1076, 1234, 1868 |
| TspDTI | ATGAA | 3 cut(s) | 632, 921, 1289 |
| TspRI | CASTG | 3 cut(s) | 1119, 1252, 1682 |
| VpaK11BI | GGWCC | 1 cut(s) | 289 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| XapI | RAATTY | 6 cut(s) | 61, 155, 922, 1579, 1624, 1880 |
| XceI | RCATGY | 3 cut(s) | 448, 998, 1780 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1466 |
| XhoI | CTCGAG | 1 cut(s) | 578 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1322 |
| XspI | CTAG | 5 cut(s) | 501, 939, 1478, 1658, 1935 |
| ZrmI | AGTACT | 1 cut(s) | 1955 |