Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012652

Orthogroup ID

OG0010286

Physical Location & Seq

Genomic Coordinates Reverse (-)

71030 .. 72114

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12652g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGTCTACTTATGGGCCGGGTCGGAGCGATGTTTTATTGGGCTTGGCTGATAAACCATGGAAGCTGTAACAGTAACTTCACCGCCTCTCTCCCTGCACCACTGCTTCCCGCCAAACACCCGCATCGCCCGGAAAGCTTTCTCATCGCAGCGGAAACGAAAGACTCCGATTTTCGAAGAAAACGACGCCTTTCCCGACTCCTTGCCGCTCCACACGAAGAACCCACATGCCATCTACAAGGTCATACAGAGCTTCGCAAGGATCTCCGCCCTCATTGCCGCTGCGTCCGTACAAGGTCGTTGGATCACGGCAAGAAAATCCACACGCATATTCGGATTAACGAGCTCGAAAACAATGACTTTATACGCACGAAGCTAGCGCATATGTACACTAGTTTTGGGTCAGTGGATGATGCACAGAAGCTGTTTGATGAAAGTCCTAGTAAGAGCGTGTATTCGTGGAATGCCTTGCTTAGAGGTACTGTCATTGCCGGTGGGAGGCGGCATCATGATGTTCTTGATACTTATTCGGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCTAGTGTGATTAAGAGCTTTGAGGGTGCTTCGGCGCTTTCACAAGGTTTAAAGACGCATGCCCTTTTGGTTAAGAATGGTTTCATTGATAGCGCCATTGTTCAGACGAGTTTGGTTGTATGGGGTGCCATGAGTGTGGGTTTTGCGCATAATAGGCGGCAAAGGGAAGCTTTGGAGTATGTTAGGATGATGGTAGATGAAGAAATAAGGCCGAATTCTGTTATATTGACTAGTATTCTTCCTGTGATTGGAGATGTTGGGGCTCGAAAGCTAGGGAGGGAGGTTCATGCTTTTGTGGTGAAGATGAAAAGCTATTCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 Pkinase

Protein Analysis

299

Amino Acids

33.63

Weight (kDa)

9.72

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71460
fragaria_vesca	FvH4_7g09420 FvH4_7g09420 FvH4_7g09420
malus_domestica	MD07G1098200.v1.1
prunus_persica	Prupe.2G122200_v2.0.a1
pyrus_communis	pycom07g08080 pycom12652g00070 pycom12652g00080
rosa_chinensis	RchiOBHm_Chr1g0346071
rosa_laevigata	RLG00000028816
rosa_multiflora	Rmu_sc0009190.1_g000001 Rmu_ssc0000255.1_g000072
rosa_roxburghii	Rroxscaffold_4G00308840
rosa_rugosa	Rorug01G0177800
rosa_samantha	Rh1AG197300 Rh1BG162500 Rh1CG182300 Rh1DG193000
rosa_wichuraiana	Rw1G016350 Rw1G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	9 cut(s)	84, 111, 122, 152, 207, 268, 280, 502, 730
AclWI	GGATC	2 cut(s)	270, 312
AcsI	RAATTY	1 cut(s)	787
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	3 cut(s)	292, 389, 481
AfiI	CCNNNNNNNGG	2 cut(s)	498, 821
AgsI	TTSAA	1 cut(s)	559
AhlI	ACTAGT	2 cut(s)	392, 803
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	270, 312
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	2 cut(s)	16, 782
ApeKI	GCWGC	2 cut(s)	149, 282
ApoI	RAATTY	1 cut(s)	787
Asp700I	GAANNNNTTC	2 cut(s)	138, 653
AspLEI	GCGC	4 cut(s)	382, 610, 668, 721
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	20, 131
AsuHPI	GGTGA	2 cut(s)	73, 883
AsuII	TTCGAA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	698
BanII	GRGCYC	2 cut(s)	348, 838
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	161, 269
BccI	CCATC	2 cut(s)	240, 757
BceAI	ACGGC	1 cut(s)	325
BcnI	CCSGG	2 cut(s)	20, 131
BcuI	ACTAGT	2 cut(s)	392, 803
BfaI	CTAG	6 cut(s)	377, 393, 441, 576, 804, 845
BfoI	RGCGCY	2 cut(s)	611, 669
BisI	GCNGC	6 cut(s)	150, 207, 280, 283, 503, 731
BlsI	GCNGC	6 cut(s)	151, 208, 281, 284, 504, 732
Bme1390I	CCNGG	2 cut(s)	20, 131
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	2 cut(s)	20, 131
BmsI	GCATC	3 cut(s)	133, 403, 514
BmtI	GCTAGC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	20, 131
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 821
Bse118I	RCCGGY	1 cut(s)	491
Bse3DI	GCAATG	2 cut(s)	274, 486
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	415, 765
BseLI	CCNNNNNNNGG	2 cut(s)	498, 821
BseMI	GCAATG	2 cut(s)	274, 486
BseXI	GCAGC	2 cut(s)	161, 269
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	18, 784
BshNI	GGYRCC	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	19, 131, 492
BslI	CCNNNNNNNGG	2 cut(s)	498, 821
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	18, 784
Bsp119I	TTCGAA	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	348, 838
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	262, 304
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	9 cut(s)	84, 111, 122, 152, 207, 268, 280, 502, 730
BspANI	GGCC	2 cut(s)	18, 784
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	700
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	270, 312
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	274, 486
BsrFI	RCCGGY	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	262, 304
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	74, 484
BstACI	GRCGYC	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	378, 633
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	415, 765
BstH2I	RGCGCY	2 cut(s)	611, 669
BstHHI	GCGC	4 cut(s)	382, 610, 668, 721
BstKTI	GATC	2 cut(s)	265, 307
BstMBI	GATC	2 cut(s)	262, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 276, 727
BstNSI	RCATGY	2 cut(s)	231, 635
BstSCI	CCNGG	2 cut(s)	18, 129
BstV1I	GCAGC	2 cut(s)	161, 269
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	18, 784
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	3 cut(s)	44, 110, 130
BtsCI	GGATG	2 cut(s)	415, 765
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 411
Cac8I	GCNNGC	2 cut(s)	378, 633
CaiI	CAGNNNCTG	1 cut(s)	424
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	4 cut(s)	382, 610, 668, 721
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	3 cut(s)	195, 274, 637
Csp6I	GTAC	3 cut(s)	291, 388, 480
CviAII	CATG	6 cut(s)	59, 228, 509, 632, 703, 860
CviQI	GTAC	3 cut(s)	291, 388, 480
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	264, 306
DpnII	GATC	2 cut(s)	262, 304
DraI	TTTAAA	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	348, 838
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	348, 838
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	6 cut(s)	62, 231, 512, 635, 706, 863
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FatI	CATG	6 cut(s)	58, 227, 508, 631, 702, 859
FauI	CCCGC	2 cut(s)	118, 129
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	6 cut(s)	150, 207, 280, 283, 503, 731
FokI	GGATG	2 cut(s)	422, 772
FriOI	GRGCYC	2 cut(s)	348, 838
Fsp4HI	GCNGC	6 cut(s)	150, 207, 280, 283, 503, 731
FspBI	CTAG	6 cut(s)	377, 393, 441, 576, 804, 845
FspI	TGCGCA	1 cut(s)	720
GlaI	GCGC	4 cut(s)	381, 609, 667, 720
GluI	GCNGC	6 cut(s)	150, 207, 280, 283, 503, 731
HaeII	RGCGCY	2 cut(s)	611, 669
HaeIII	GGCC	2 cut(s)	18, 784
HapII	CCGG	3 cut(s)	19, 131, 492
HgaI	GACGC	3 cut(s)	195, 274, 637
HhaI	GCGC	4 cut(s)	382, 610, 668, 721
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	6 cut(s)	62, 231, 512, 635, 706, 863
Hin6I	GCGC	4 cut(s)	380, 608, 666, 719
HinP1I	GCGC	4 cut(s)	380, 608, 666, 719
HindIII	AAGCTT	2 cut(s)	136, 741
HinfI	GANTC	2 cut(s)	164, 198
HpaII	CCGG	3 cut(s)	19, 131, 492
HphI	GGTGA	2 cut(s)	73, 883
Hpy166II	GTNNAC	2 cut(s)	8, 390
Hpy188I	TCNGA	5 cut(s)	26, 169, 336, 532, 678
Hpy188III	TCNNGA	3 cut(s)	195, 509, 518
Hpy8I	GTNNAC	2 cut(s)	8, 390
Hpy99I	CGWCG	1 cut(s)	189
HpyCH4III	ACNGT	2 cut(s)	74, 484
HpyCH4V	TGCA	2 cut(s)	98, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 276, 727
HpyF3I	CTNAG	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	6 cut(s)	62, 231, 512, 635, 706, 863
HspAI	GCGC	4 cut(s)	380, 608, 666, 719
Kzo9I	GATC	2 cut(s)	262, 304
LmnI	GCTCC	2 cut(s)	26, 214
LpnPI	CCDG	5 cut(s)	32, 108, 144, 505, 828
Lsp1109I	GCAGC	2 cut(s)	161, 269
LweI	GCATC	3 cut(s)	133, 403, 514
MaeI	CTAG	6 cut(s)	377, 393, 441, 576, 804, 845
MaeIII	GTNAC	2 cut(s)	68, 74
MalI	GATC	2 cut(s)	264, 306
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	262, 304
MboII	GAAGA	5 cut(s)	189, 230, 785, 803, 886
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	348, 838
MluCI	AATT	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	158, 192
MmeI	TCCRAC	2 cut(s)	4, 282
MnlI	CCTC	9 cut(s)	97, 282, 470, 492, 531, 589, 843, 847, 885
MroXI	GAANNNNTTC	2 cut(s)	138, 653
MseI	TTAA	4 cut(s)	339, 585, 623, 645
MslI	CAYNNNNRTG	2 cut(s)	510, 707
MspA1I	CMGCKG	2 cut(s)	152, 282
MspI	CCGG	3 cut(s)	19, 131, 492
MspR9I	CCNGG	2 cut(s)	20, 131
Mva1269I	GAATGC	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	135, 276, 727
NciI	CCSGG	2 cut(s)	20, 131
NcoI	CCATGG	1 cut(s)	58
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	262, 304
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	6 cut(s)	62, 231, 512, 635, 706, 863
NlaIV	GGNNCC	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	720
NspI	RCATGY	2 cut(s)	231, 635
NspV	TTCGAA	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	635
PagI	TCATGA	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	2 cut(s)	181, 193
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	138, 653
PkrI	GCNGC	6 cut(s)	151, 208, 281, 284, 504, 732
PleI	GAGTC	2 cut(s)	158, 192
PpsI	GAGTC	2 cut(s)	158, 192
Psp124BI	GAGCTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	700
PspPI	GGNCC	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	292, 389, 481
RsaNI	GTAC	3 cut(s)	291, 388, 480
RseI	CAYNNNNRTG	2 cut(s)	510, 707
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	339, 585, 623, 645
SatI	GCNGC	6 cut(s)	150, 207, 280, 283, 503, 731
Sau3AI	GATC	2 cut(s)	262, 304
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	158, 192
ScrFI	CCNGG	2 cut(s)	20, 131
SduI	GDGCHC	2 cut(s)	348, 838
SfaNI	GCATC	3 cut(s)	133, 403, 514
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	510, 707
SpeI	ACTAGT	2 cut(s)	392, 803
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	1 cut(s)	787
SsiI	CCGC	9 cut(s)	84, 111, 122, 152, 207, 268, 280, 502, 730
SspMI	CTAG	6 cut(s)	377, 393, 441, 576, 804, 845
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	18, 129
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	74, 484
TaqI	TCGA	4 cut(s)	175, 348, 838, 890
TasI	AATT	1 cut(s)	787
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	4 cut(s)	209, 282, 505, 733
Tru1I	TTAA	4 cut(s)	339, 585, 623, 645
Tru9I	TTAA	4 cut(s)	339, 585, 623, 645
TscAI	CASTG	2 cut(s)	108, 411
TseI	GCWGC	2 cut(s)	149, 282
TspDTI	ATGAA	5 cut(s)	447, 646, 786, 848, 893
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	108, 411
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	2 cut(s)	231, 635
XmiI	GTMKAC	1 cut(s)	7
XmnI	GAANNNNTTC	2 cut(s)	138, 653
XspI	CTAG	6 cut(s)	377, 393, 441, 576, 804, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.