Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

400262 .. 402800

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGATATGAAAAGGCGGACAGCGGCAACAGCACAGAAAGCAGAGGAGGAAATCAAATGGCTAGTGTGAAAGCAGTGGCTCTTATCACCGGAGATTCCAACGTCCGAGGCTCCCTTCATTTCCTTCAGGATTCCAACGGGGGGCCTACACGCATACAGGGGAGGATTAGTGGCCTCTCTCCTGGCCTTCATGGTTTCCATATCCATGCTCTTGGTGATACCTCCAATGGTTGCAATTCCACTGGACCTCATTTTAATCCACTGAAGAAGGAGCATGGAGCTCCTTCGGATAAGGAGCGTCACGCTGGCGATTTGGGTAACGTTGTTGCAGGCCCAGATGGAGTTGCTGAGGTTTCTCTCCAGGACTGGCAGATTCCACTGAGCGGACCTGATTCCATTCTTGGGCGAGCAGTCGTAGTGCACGCTGATCCTGATGATCTTGGTAAAGGTGGACATGAACTTAGCAAGACTACCGGGAACGCAGGAGCAAGAGTTGGATGTGGTATCATTGGCCTTAAGTCATCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

177

Amino Acids

18.02

Weight (kDa)

6.49

Isoelectric Point (pI)

18.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	35 - 170	2.2e-49	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	384
AciI	CCGC	3 cut(s)	17, 24, 384
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	110, 284
AfiI	CCNNNNNNNGG	3 cut(s)	141, 383, 402
AflII	CTTAAG	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	181, 360
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	2 cut(s)	283, 423
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	5 cut(s)	143, 172, 184, 331, 511
ApaLI	GTGCAC	1 cut(s)	419
AspS9I	GGNCC	4 cut(s)	143, 245, 332, 386
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	79, 227
AvaII	GGWCC	2 cut(s)	245, 386
BaeGI	GKGCMC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	283, 423
BbvCI	CCTCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	183, 362
BcnI	CCSGG	1 cut(s)	475
BfaI	CTAG	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	515
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	3 cut(s)	183, 362, 475
Bme18I	GGWCC	2 cut(s)	245, 386
BmgT120I	GGNCC	4 cut(s)	143, 245, 332, 386
BmiI	GGNNCC	2 cut(s)	112, 144
BmrFI	CCNGG	3 cut(s)	183, 362, 475
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 383, 402
Bse1I	ACTGG	2 cut(s)	247, 371
BseBI	CCWGG	2 cut(s)	183, 362
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	3 cut(s)	141, 383, 402
BseMII	CTCAG	2 cut(s)	339, 371
BseNI	ACTGG	2 cut(s)	247, 371
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	423
BshFI	GGCC	5 cut(s)	145, 174, 186, 333, 513
BsiHKAI	GWGCWC	2 cut(s)	283, 423
BsiSI	CCGG	2 cut(s)	90, 474
BslI	CCNNNNNNNGG	3 cut(s)	141, 383, 402
BsnI	GGCC	5 cut(s)	145, 174, 186, 333, 513
Bsp1286I	GDGCHC	2 cut(s)	283, 423
Bsp143I	GATC	2 cut(s)	427, 436
BspACI	CCGC	3 cut(s)	17, 24, 384
BspANI	GGCC	5 cut(s)	145, 174, 186, 333, 513
BspCNI	CTCAG	2 cut(s)	340, 372
BspLI	GGNNCC	2 cut(s)	112, 144
BspPI	GGATC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	247, 371
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	427, 436
Bst2UI	CCWGG	2 cut(s)	183, 362
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	307, 331, 408, 423
BstDEI	CTNAG	3 cut(s)	348, 380, 461
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	2 cut(s)	430, 439
BstMBI	GATC	2 cut(s)	427, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 39
BstNI	CCWGG	2 cut(s)	183, 362
BstSCI	CCNGG	3 cut(s)	181, 360, 473
BstSLI	GKGCMC	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	145, 174, 186, 333, 513
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	4 cut(s)	81, 240, 260, 377
Cac8I	GCNNGC	4 cut(s)	307, 331, 408, 423
Cfr13I	GGNCC	4 cut(s)	143, 245, 332, 386
CseI	GACGC	1 cut(s)	287
CviAII	CATG	4 cut(s)	191, 206, 275, 455
CviJI	RGCY	9 cut(s)	62, 80, 111, 145, 174, 186, 281, 333, 513
CviKI_1	RGCY	9 cut(s)	62, 80, 111, 145, 174, 186, 281, 333, 513
DdeI	CTNAG	3 cut(s)	348, 380, 461
DpnI	GATC	2 cut(s)	429, 438
DpnII	GATC	2 cut(s)	427, 436
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	245, 386
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	110, 284
EcoICRI	GAGCTC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	181, 360
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	4 cut(s)	194, 209, 278, 458
FaiI	YATR	7 cut(s)	9, 155, 192, 201, 207, 276, 456
FatI	CATG	4 cut(s)	190, 205, 274, 454
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	5 cut(s)	145, 174, 186, 333, 513
HapII	CCGG	2 cut(s)	90, 474
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	194, 209, 278, 458
HinfI	GANTC	4 cut(s)	95, 131, 373, 392
HpaII	CCGG	2 cut(s)	90, 474
HphI	GGTGA	2 cut(s)	79, 227
Hpy166II	GTNNAC	2 cut(s)	421, 452
Hpy188I	TCNGA	2 cut(s)	107, 289
Hpy188III	TCNNGA	2 cut(s)	128, 431
Hpy8I	GTNNAC	2 cut(s)	421, 452
HpyAV	CCTTC	5 cut(s)	125, 134, 197, 262, 294
HpyCH4IV	ACGT	2 cut(s)	102, 321
HpyCH4V	TGCA	3 cut(s)	234, 329, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 39
HpyF3I	CTNAG	3 cut(s)	348, 380, 461
HpySE526I	ACGT	2 cut(s)	102, 321
Hsp92II	CATG	4 cut(s)	194, 209, 278, 458
Kzo9I	GATC	2 cut(s)	427, 436
LmnI	GCTCC	6 cut(s)	116, 271, 278, 286, 295, 485
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	102, 321
MaeIII	GTNAC	2 cut(s)	299, 317
MalI	GATC	2 cut(s)	429, 438
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	2 cut(s)	427, 436
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	283, 423
MluCI	AATT	1 cut(s)	235
MmeI	TCCRAC	3 cut(s)	123, 159, 475
MnlI	CCTC	8 cut(s)	38, 41, 101, 156, 185, 232, 258, 343
MseI	TTAA	2 cut(s)	255, 516
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	2 cut(s)	90, 474
MspR9I	CCNGG	3 cut(s)	183, 362, 475
MvaI	CCWGG	2 cut(s)	183, 362
MwoI	GCNNNNNNNGC	2 cut(s)	30, 39
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	2 cut(s)	427, 436
NlaIII	CATG	4 cut(s)	194, 209, 278, 458
NlaIV	GGNNCC	2 cut(s)	112, 144
NmuCI	GTSAC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	95, 131, 373, 392
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	181, 360
PspGI	CCWGG	2 cut(s)	181, 360
PspN4I	GGNNCC	2 cut(s)	112, 144
PspPI	GGNCC	4 cut(s)	143, 245, 332, 386
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	255, 516
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	427, 436
Sau96I	GGNCC	4 cut(s)	143, 245, 332, 386
ScrFI	CCNGG	3 cut(s)	183, 362, 475
SduI	GDGCHC	2 cut(s)	283, 423
SetI	ASST	8 cut(s)	105, 224, 250, 283, 324, 354, 391, 451
SinI	GGWCC	2 cut(s)	245, 386
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	3 cut(s)	17, 24, 384
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	181, 360, 473
TaiI	ACGT	2 cut(s)	105, 324
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	95, 131, 373, 392
Tru1I	TTAA	2 cut(s)	255, 516
Tru9I	TTAA	2 cut(s)	255, 516
TscAI	CASTG	4 cut(s)	81, 247, 267, 384
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	24, 107, 179, 471
TspRI	CASTG	4 cut(s)	81, 247, 267, 384
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	245, 386
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.