pycom12g00450

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006924
Physical Location & Seq
Forward (+)
442094 .. 444310
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGGCCGATTCTTCTTCGGCGGTGCTATACTATCTGTCTCAGCCGCGGTCCTTGAGACATTTTTACTTCGTACCCACAATCTTAGCTCTCGTAACGTCTCTCCTCATCCTCTTCTACATTTCCTCTACCTCCAATCTCTTCGCCCACCACCATCATCATGCTCACTCAATCCCACAACTGCTACTCAATATTTCATCTTCCTATACACCCCTTCGAGTCGAAGAAGCTCATCTGAAAGCGGACGGTGCTCAAGTAATCGAGGGTCAACGCTCACCAGAGCAACCTCAATTGGGATCGAATGGAAATTATGGCAATAACAACGCCGTGTTCCATGATAGACATATCTTTCTTGAAGACTATAAAGAAATGAAAAGGAGCTTTAAGATATATGTTTATCCTCACAGGCAAGATGACTCCTTTGCAAATGCACTTTTGCCTGTGGATTCTGAACCCGGGGGTAATTACGCGAGTGAAAGTTACTTCAAGAAGGTCCTTATGAAAAGTCATTTCATTACCAATGATCCTACTAAGGCGGATCTTTTCTTTCTGCCTTTCTCAATTGCAAGGTTGCGGCATGACCCCAGAATTGGCGTGGGAGGTATCCAAGATTTTATAAGAGATTACATCTTCAATGTTAGTCACAAGTACGAATATTGGAACCGGACAGGTGGAGCAGATCATTTTTACGTTGCTTGTCATTCCATTGGGCGGTCAGCCATGGAAAAAGCAAATGAAGTCAAATTTAATGCCATTCAAGTTGTTTGCTCTTCAAGCTACTTCCTACCGGGCTACATACCACACAAGGATGCATGTCTGCCACAAATTTGGCCCAGAAATGAAAAGCCCCCTGACCTTCGTTCTTCAAACAGGACGAAACTTGCATTCTTCGCCGGAGGAATCAACTCCCCAGTACGAGAAAAGCTTCTTCAAGTCTGGAGAAATGACTCCGAGATTTTTGCGCACTTTGGTCGGCTTACTACACCATATGCTGATGAACTGCTTGGCAGCAGGTTCTGCCTCCATGTCAAAGGCTTTGAAGTAAATACAGCTCGTATTGCAGATTCACTATACTACGGTTGTGTCCCAGTGATAATTGCCAACTACTATGATTTACCATTCGCAGACATAATAAACTGGAGCAGCTTCTCAGTCATTGTTGCTACTCTAGATATCCCACTGCTTAAGAAAATCCTTAAGGAGATCAGCTCCGATGAATATCTGCGGTTACAGAGTAATGTGTTGAGGGTGCGCAAACATTTCCAGTGGCATCTTTCCCCTATTGATTATGATGCTTTTTACATGGTTATGTATGAGTTGTGGCTCCGACGAGGTTTTTCGACAGTTCCCTTGAGCAATTTTGAAACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Exostosin

Protein Analysis

457

Amino Acids

52.4

Weight (kDa)

8.13

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 124 - 400 9.6e-69 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
Acc16I TGCGCA 2 cut(s) 960, 1250
Acc36I ACCTGC 1 cut(s) 999
AccII CGCG 2 cut(s) 46, 467
AciI CCGC 8 cut(s) 20, 44, 46, 239, 533, 571, 709, 1222
AclWI GGATC 3 cut(s) 301, 515, 543
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 740, 822
AfaI GTAC 3 cut(s) 72, 647, 912
AfiI CCNNNNNNNGG 3 cut(s) 290, 587, 708
AflII CTTAAG 2 cut(s) 1181, 1193
AgsI TTSAA 9 cut(s) 353, 484, 631, 755, 771, 864, 929, 1037, 1361
AluBI AGCT 8 cut(s) 86, 227, 378, 774, 922, 1049, 1143, 1206
AluI AGCT 8 cut(s) 86, 227, 378, 774, 922, 1049, 1143, 1206
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 3 cut(s) 42, 49, 102
AlwI GGATC 3 cut(s) 301, 515, 543
AlwNI CAGNNNCTG 1 cut(s) 1014
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 2 cut(s) 3, 827
ApeKI GCWGC 2 cut(s) 1005, 1140
ApoI RAATTY 2 cut(s) 740, 822
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 2 cut(s) 961, 1251
AspS9I GGNCC 3 cut(s) 48, 490, 828
AsuC2I CCSGG 3 cut(s) 453, 454, 786
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 2 cut(s) 48, 490
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 1017, 1152
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 4 cut(s) 938, 950, 972, 984
BciVI GTATCC 1 cut(s) 611
BcnI CCSGG 3 cut(s) 453, 454, 786
BcoDI GTCTC 3 cut(s) 42, 49, 102
BfaI CTAG 1 cut(s) 1166
BfrI CTTAAG 2 cut(s) 1181, 1193
BfuAI ACCTGC 1 cut(s) 999
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 4 cut(s) 44, 572, 1006, 1141
BlsI GCNGC 4 cut(s) 45, 573, 1007, 1142
Bme1390I CCNGG 3 cut(s) 453, 454, 786
Bme18I GGWCC 2 cut(s) 48, 490
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 3 cut(s) 48, 490, 828
BmiI GGNNCC 2 cut(s) 659, 1322
BmrFI CCNGG 3 cut(s) 453, 454, 786
BmrI ACTGGG 2 cut(s) 902, 1079
BmsI GCATC 3 cut(s) 796, 1276, 1279
BmuI ACTGGG 2 cut(s) 902, 1079
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
BpmI CTGGAG 2 cut(s) 955, 1156
BpuEI CTTGAG 3 cut(s) 73, 234, 1369
BpuMI CCSGG 3 cut(s) 453, 454, 786
BsaBI GATNNNNATC 1 cut(s) 1215
BsaJI CCNNGG 4 cut(s) 44, 452, 453, 717
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 587, 708
Bse1I ACTGG 4 cut(s) 908, 1085, 1139, 1261
Bse8I GATNNNNATC 1 cut(s) 1215
BseDI CCNNGG 4 cut(s) 44, 452, 453, 717
BseGI GGATG 2 cut(s) 105, 811
BseJI GATNNNNATC 1 cut(s) 1215
BseLI CCNNNNNNNGG 3 cut(s) 290, 587, 708
BseMII CTCAG 2 cut(s) 53, 1161
BseNI ACTGG 4 cut(s) 908, 1085, 1139, 1261
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 1017, 1152
Bsh1236I CGCG 2 cut(s) 46, 467
BshFI GGCC 2 cut(s) 5, 829
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 4 cut(s) 453, 661, 785, 891
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 3 cut(s) 290, 587, 708
BsmAI GTCTC 3 cut(s) 42, 49, 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 1067
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 2 cut(s) 5, 829
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 5 cut(s) 293, 520, 535, 676, 1200
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 8 cut(s) 20, 44, 46, 239, 533, 571, 709, 1222
BspANI GGCC 2 cut(s) 5, 829
BspCNI CTCAG 2 cut(s) 52, 1160
BspFNI CGCG 2 cut(s) 46, 467
BspLI GGNNCC 2 cut(s) 659, 1322
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 3 cut(s) 301, 515, 543
BspQI GCTCTTC 1 cut(s) 772
BspTI CTTAAG 2 cut(s) 1181, 1193
BsrI ACTGG 4 cut(s) 908, 1085, 1139, 1261
BssECI CCNNGG 4 cut(s) 44, 452, 453, 717
BssMI GATC 5 cut(s) 293, 520, 535, 676, 1200
BssT1I CCWWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 245, 1076, 1342
Bst6I CTCTTC 3 cut(s) 116, 143, 772
BstAFI CTTAAG 2 cut(s) 1181, 1193
BstAPI GCANNNNNTGC 1 cut(s) 1014
BstDEI CTNAG 5 cut(s) 39, 82, 528, 1147, 1368
BstDSI CCRYGG 2 cut(s) 44, 717
BstF5I GGATG 2 cut(s) 105, 811
BstFNI CGCG 2 cut(s) 46, 467
BstHHI GCGC 2 cut(s) 961, 1251
BstKTI GATC 5 cut(s) 296, 523, 538, 679, 1203
BstMAI GTCTC 3 cut(s) 42, 49, 102
BstMBI GATC 5 cut(s) 293, 520, 535, 676, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 245, 771, 887, 1014, 1055
BstNSI RCATGY 1 cut(s) 813
BstSCI CCNGG 3 cut(s) 451, 452, 784
BstUI CGCG 2 cut(s) 46, 467
BstV1I GCAGC 2 cut(s) 1017, 1152
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 535
BstXI CCANNNNNNTGG 1 cut(s) 825
BstYI RGATCY 1 cut(s) 535
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 5, 829
BtgI CCRYGG 2 cut(s) 44, 717
BtsCI GGATG 2 cut(s) 105, 811
BtsI GCAGTG 1 cut(s) 1175
BtsIMutI CAGTG 3 cut(s) 1092, 1175, 1268
BveI ACCTGC 1 cut(s) 999
CaiI CAGNNNCTG 1 cut(s) 1014
CfoI GCGC 2 cut(s) 961, 1251
Cfr13I GGNCC 3 cut(s) 48, 490, 828
Cfr42I CCGCGG 1 cut(s) 47
Cfr9I CCCGGG 1 cut(s) 452
Csp6I GTAC 3 cut(s) 71, 646, 911
CviAII CATG 7 cut(s) 158, 332, 575, 718, 810, 1022, 1300
CviQI GTAC 3 cut(s) 71, 646, 911
DdeI CTNAG 5 cut(s) 39, 82, 528, 1147, 1368
DpnI GATC 5 cut(s) 295, 522, 537, 678, 1202
DpnII GATC 5 cut(s) 293, 520, 535, 676, 1200
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 116, 143, 772
EarI CTCTTC 3 cut(s) 116, 143, 772
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 717
Eco32I GATATC 1 cut(s) 1171
Eco47I GGWCC 2 cut(s) 48, 490
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 490
EcoRV GATATC 1 cut(s) 1171
EcoT14I CCWWGG 1 cut(s) 717
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 717
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 7 cut(s) 161, 335, 578, 721, 813, 1025, 1303
FaqI GGGAC 1 cut(s) 1067
FatI CATG 7 cut(s) 157, 331, 574, 717, 809, 1021, 1299
FauNDI CATATG 1 cut(s) 985
Fnu4HI GCNGC 4 cut(s) 44, 572, 1006, 1141
FokI GGATG 2 cut(s) 92, 818
Fsp4HI GCNGC 4 cut(s) 44, 572, 1006, 1141
FspBI CTAG 1 cut(s) 1166
FspI TGCGCA 2 cut(s) 960, 1250
GlaI GCGC 2 cut(s) 960, 1250
GluI GCNGC 4 cut(s) 44, 572, 1006, 1141
GsuI CTGGAG 2 cut(s) 955, 1156
HaeIII GGCC 2 cut(s) 5, 829
HapII CCGG 4 cut(s) 453, 661, 785, 891
HhaI GCGC 2 cut(s) 961, 1251
Hin1II CATG 7 cut(s) 161, 335, 578, 721, 813, 1025, 1303
Hin6I GCGC 2 cut(s) 959, 1249
HinP1I GCGC 2 cut(s) 959, 1249
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 7 cut(s) 8, 216, 413, 443, 897, 944, 1061
HpaII CCGG 4 cut(s) 453, 661, 785, 891
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 5 cut(s) 234, 448, 949, 1210, 1325
Hpy188III TCNNGA 4 cut(s) 350, 484, 934, 1166
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 1329
HpyAV CCTTC 3 cut(s) 221, 481, 863
HpyCH4III ACNGT 3 cut(s) 245, 1076, 1342
HpyCH4IV ACGT 2 cut(s) 95, 687
HpyCH4V TGCA 6 cut(s) 422, 428, 563, 809, 881, 1058
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 771, 887, 1014, 1055
HpyF3I CTNAG 5 cut(s) 39, 82, 528, 1147, 1368
HpySE526I ACGT 2 cut(s) 95, 687
Hsp92II CATG 7 cut(s) 161, 335, 578, 721, 813, 1025, 1303
HspAI GCGC 2 cut(s) 959, 1249
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 5 cut(s) 293, 520, 535, 676, 1200
LguI GCTCTTC 1 cut(s) 772
LmnI GCTCC 5 cut(s) 375, 671, 1137, 1211, 1326
Lsp1109I GCAGC 2 cut(s) 1017, 1152
LweI GCATC 3 cut(s) 796, 1276, 1279
MaeI CTAG 1 cut(s) 1166
MaeII ACGT 2 cut(s) 95, 687
MaeIII GTNAC 4 cut(s) 91, 476, 638, 1224
MalI GATC 5 cut(s) 295, 522, 537, 678, 1202
MboI GATC 5 cut(s) 293, 520, 535, 676, 1200
MfeI CAATTG 2 cut(s) 287, 558
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 9 cut(s) 287, 304, 460, 558, 585, 740, 822, 1092, 1354
MlyI GAGTC 3 cut(s) 225, 407, 938
MmeI TCCRAC 1 cut(s) 1348
Mph1103I ATGCAT 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 4 cut(s) 381, 744, 1182, 1194
MslI CAYNNNNRTG 3 cut(s) 156, 804, 1304
MspA1I CMGCKG 1 cut(s) 46
MspCI CTTAAG 2 cut(s) 1181, 1193
MspI CCGG 4 cut(s) 453, 661, 785, 891
MspR9I CCNGG 3 cut(s) 453, 454, 786
MunI CAATTG 2 cut(s) 287, 558
Mva1269I GAATGC 1 cut(s) 881
MvnI CGCG 2 cut(s) 46, 467
MwoI GCNNNNNNNGC 5 cut(s) 245, 771, 887, 1014, 1055
NciI CCSGG 3 cut(s) 453, 454, 786
NcoI CCATGG 1 cut(s) 717
NdeI CATATG 1 cut(s) 985
NdeII GATC 5 cut(s) 293, 520, 535, 676, 1200
NlaIII CATG 7 cut(s) 161, 335, 578, 721, 813, 1025, 1303
NlaIV GGNNCC 2 cut(s) 659, 1322
NmuCI GTSAC 1 cut(s) 638
NsbI TGCGCA 2 cut(s) 960, 1250
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 1 cut(s) 813
PciSI GCTCTTC 1 cut(s) 772
PctI GAATGC 1 cut(s) 881
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 4 cut(s) 8, 443, 897, 1061
PkrI GCNGC 4 cut(s) 45, 573, 1007, 1142
PleI GAGTC 3 cut(s) 224, 407, 938
PpsI GAGTC 3 cut(s) 224, 407, 938
PpuMI RGGWCCY 1 cut(s) 490
PsiI TTATAA 1 cut(s) 614
Psp5II RGGWCCY 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 659, 1322
PspPI GGNCC 3 cut(s) 48, 490, 828
PspPPI RGGWCCY 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 3 cut(s) 72, 647, 912
RsaNI GTAC 3 cut(s) 71, 646, 911
RseI CAYNNNNRTG 3 cut(s) 156, 804, 1304
SacII CCGCGG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 772
SaqAI TTAA 4 cut(s) 381, 744, 1182, 1194
SatI GCNGC 4 cut(s) 44, 572, 1006, 1141
Sau3AI GATC 5 cut(s) 293, 520, 535, 676, 1200
Sau96I GGNCC 3 cut(s) 48, 490, 828
SchI GAGTC 3 cut(s) 225, 407, 938
ScrFI CCNGG 3 cut(s) 453, 454, 786
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 3 cut(s) 796, 1276, 1279
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 2 cut(s) 48, 490
SmaI CCCGGG 1 cut(s) 454
SmiMI CAYNNNNRTG 3 cut(s) 156, 804, 1304
SmlI CTYRAG 5 cut(s) 52, 249, 1181, 1193, 1348
SmoI CTYRAG 5 cut(s) 52, 249, 1181, 1193, 1348
Sse9I AATT 9 cut(s) 287, 304, 460, 558, 585, 740, 822, 1092, 1354
SsiI CCGC 8 cut(s) 20, 44, 46, 239, 533, 571, 709, 1222
SspI AATATT 2 cut(s) 190, 653
SspMI CTAG 1 cut(s) 1166
StyD4I CCNGG 3 cut(s) 451, 452, 784
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 3 cut(s) 245, 1076, 1342
TaiI ACGT 2 cut(s) 98, 690
TaqI TCGA 5 cut(s) 214, 219, 258, 296, 1337
TasI AATT 9 cut(s) 287, 304, 460, 558, 585, 740, 822, 1092, 1354
TauI GCSGC 2 cut(s) 46, 574
TfiI GAWTC 4 cut(s) 8, 443, 897, 1061
Tru1I TTAA 4 cut(s) 381, 744, 1182, 1194
Tru9I TTAA 4 cut(s) 381, 744, 1182, 1194
TscAI CASTG 3 cut(s) 1092, 1182, 1268
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 2 cut(s) 1005, 1140
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 8 cut(s) 183, 383, 499, 512, 747, 852, 1008, 1227
TspMI CCCGGG 1 cut(s) 452
TspRI CASTG 3 cut(s) 1092, 1182, 1268
Vha464I CTTAAG 2 cut(s) 1181, 1193
VpaK11BI GGWCC 2 cut(s) 48, 490
XapI RAATTY 2 cut(s) 740, 822
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 1 cut(s) 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmaI CCCGGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 1 cut(s) 1166
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.