pycom12g01910

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013142
Physical Location & Seq
Reverse (-)
1583242 .. 1584856
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGATGCAGACGGAGCAGTCTCAGGAGGCGGCTCAGCCGCAGCAGCAGCAGCTGATGTTGCAGAACTCCTCCGGAAGCCTCAGCTTCAGCAGCAACATGTCGAGGGAGGACGAGGAGATGTCAAGGTCGGCGCTTTCCACTTTCAGAGCCAAAGAGGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAGGCTCAGTTGGGTCGTGTGGAAGAGGAGACCAAGCGTTTGGCCACTATTCGTGAGGAGCTTGAAGGGCTCTCAGATCCGATGAGGAAGGATGTTTCACAAGTTCGTAAGAAGATCGATGCGATTAACAAAGAGTTAAAGCCACTAGGACATACCTGCCAGAAGAAGGAAAAGGAATACAGAGATGCACTTGAGGCTTTCAATGAAAAGAACAGAGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGCTGGTGAGCGAAAGTGAGAAGACGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACATAGAATCTTTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

174

Amino Acids

20.21

Weight (kDa)

6.69

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 24 - 171 2.6e-75 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 362
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 2 cut(s) 29, 38
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 2 cut(s) 263, 400
AluBI AGCT 8 cut(s) 52, 84, 259, 427, 439, 448, 484, 493
AluI AGCT 8 cut(s) 52, 84, 259, 427, 439, 448, 484, 493
Alw26I GTCTC 2 cut(s) 24, 221
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 52
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 6 cut(s) 40, 43, 46, 49, 90, 424
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AspLEI GCGC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 463
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 473
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 6 cut(s) 52, 55, 58, 61, 102, 436
BccI CCATC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 24, 221
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 8 cut(s) 30, 38, 41, 44, 47, 50, 91, 425
BlpI GCTNAGC 2 cut(s) 33, 494
BlsI GCNGC 8 cut(s) 31, 39, 42, 45, 48, 51, 92, 426
BmsI GCATC 2 cut(s) 307, 373
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 2 cut(s) 33, 494
BpuEI CTTGAG 1 cut(s) 410
Bsa29I ATCGAT 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 2 cut(s) 295, 480
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 6 cut(s) 35, 47, 94, 218, 285, 485
BseRI GAGGAG 7 cut(s) 58, 128, 170, 173, 239, 269, 503
BseXI GCAGC 6 cut(s) 52, 55, 58, 61, 102, 436
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 24, 221
BsnI GGCC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 162, 274, 312
Bsp1720I GCTNAGC 2 cut(s) 33, 494
BspACI CCGC 2 cut(s) 29, 38
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 6 cut(s) 34, 46, 93, 217, 284, 486
BspDI ATCGAT 1 cut(s) 315
BspEI TCCGGA 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 221
BssMI GATC 3 cut(s) 162, 274, 312
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 6 cut(s) 21, 33, 80, 204, 271, 494
BstF5I GGATG 2 cut(s) 295, 480
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 3 cut(s) 165, 277, 315
BstMAI GTCTC 2 cut(s) 24, 221
BstMBI GATC 3 cut(s) 162, 274, 312
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 6 cut(s) 52, 55, 58, 61, 102, 436
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 242
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 2 cut(s) 295, 480
BveI ACCTGC 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 1 cut(s) 97
DdeI CTNAG 6 cut(s) 21, 33, 80, 204, 271, 494
DpnI GATC 3 cut(s) 164, 276, 314
DpnII GATC 3 cut(s) 162, 274, 312
DraI TTTAAA 1 cut(s) 516
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 98, 351, 506
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 8 cut(s) 30, 38, 41, 44, 47, 50, 91, 425
FokI GGATG 2 cut(s) 302, 487
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 8 cut(s) 30, 38, 41, 44, 47, 50, 91, 425
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 132
GluI GCNGC 8 cut(s) 30, 38, 41, 44, 47, 50, 91, 425
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 509
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 146, 188, 274, 279
Hpy188III TCNNGA 4 cut(s) 23, 72, 166, 251
HpyAV CCTTC 4 cut(s) 187, 257, 280, 358
HpyCH4V TGCA 4 cut(s) 7, 61, 386, 424
HpyF3I CTNAG 6 cut(s) 21, 33, 80, 204, 271, 494
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 71
Kzo9I GATC 3 cut(s) 162, 274, 312
LmnI GCTCC 4 cut(s) 13, 256, 445, 490
LpnPI CCDG 7 cut(s) 8, 85, 185, 367, 371, 434, 470
Lsp1109I GCAGC 6 cut(s) 52, 55, 58, 61, 102, 436
LweI GCATC 2 cut(s) 307, 373
MaeI CTAG 1 cut(s) 344
MalI GATC 3 cut(s) 164, 276, 314
MboI GATC 3 cut(s) 162, 274, 312
MboII GAAGA 7 cut(s) 184, 187, 233, 322, 373, 478, 490
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 242
MroI TCCGGA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 242
MseI TTAA 3 cut(s) 324, 335, 515
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 72
NdeII GATC 3 cut(s) 162, 274, 312
NlaIII CATG 1 cut(s) 100
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 509
PkrI GCNGC 8 cut(s) 31, 39, 42, 45, 48, 51, 92, 426
PscI ACATGT 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 52
SaqAI TTAA 3 cut(s) 324, 335, 515
SatI GCNGC 8 cut(s) 30, 38, 41, 44, 47, 50, 91, 425
Sau3AI GATC 3 cut(s) 162, 274, 312
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 2 cut(s) 307, 373
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SsiI CCGC 2 cut(s) 29, 38
SspMI CTAG 1 cut(s) 344
TaqI TCGA 3 cut(s) 101, 165, 315
TauI GCSGC 2 cut(s) 32, 40
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 3 cut(s) 324, 335, 515
Tru9I TTAA 3 cut(s) 324, 335, 515
TseI GCWGC 6 cut(s) 40, 43, 46, 49, 90, 424
TspDTI ATGAA 2 cut(s) 417, 491
TspGWI ACGGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 100
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.