Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013786

Physical Location & Seq

Genomic Coordinates Forward (+)

10559875 .. 10560423

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGCAACTGTTGCTCTCAACGCAACACGAAGGATGCCCCAAACGACGACAATAAGGGTGACAACAACAATGCTGCGGACAAAAACCCTACCGCTGCCAATTCCGCCCCCAACCCCAGCCACGCTGATCACCATAAACCTTCCGCCTCCCCAACTCACCCAGGAAAGGTCGCCAAACCGGGCCCTATTGGCCCCGTCCTTGGCCGCCCCATGGAGGACGTCCGCACCACGTACAGCATTGGCAAGGAGCTGGGACGGGGCCAGTTCGGTGTTACCCACTTGTGCACGCACAAGGCCACGGGAGAGCAGTTCGCCTGCAAGACAATCGCCAAGCGGAAGCTGGTGAACAAGGAAGATATTGAGGATGTGAGGAGGGAGGTACAGATCATGCATCATTTGAGGGGCAGCCAAACATTGTGGAACTCAAGGGAGCTTATGAGGACAAGCAGTCGGTTCATTTGGTCATGGAGTTGTGCGCAGGAGGAGAGCTTTTCGACAGGATCATCTCAAAAGGACATTACACGGAGCGCGCTGCCGCTGCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

183

Amino Acids

19.99

Weight (kDa)

9.11

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 164	8.5e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12180 AT5G19360
fragaria_vesca	FvH4_3g27800
malus_domestica	MD03G1165100.v1.1 MD11G1184100.v1.1
prunus_persica	Prupe.4G263600_v2.0.a1
pyrus_communis	pycom12g08860
rosa_chinensis	RchiOBHm_Chr5g0050441
rosa_laevigata	RLG00000034702
rosa_multiflora	Rmu_co8347277.1_g000001 Rmu_sc0003202.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030430
rosa_rugosa	Rorug05G0261000
rosa_samantha	Rh5AG332700 Rh5CG370000 Rh5DG355500
rosa_wichuraiana	Rw5G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
Acc16I	TGCGCA	1 cut(s)	477
AccII	CGCG	1 cut(s)	530
AciI	CCGC	8 cut(s)	77, 93, 105, 144, 205, 223, 334, 536
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	233, 381
AfiI	CCNNNNNNNGG	4 cut(s)	166, 200, 211, 214
AhdI	GACNNNNNGTC	1 cut(s)	447
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	250, 340, 433, 489
AluI	AGCT	4 cut(s)	250, 340, 433, 489
Alw21I	GWGCWC	1 cut(s)	287
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	5 cut(s)	181, 190, 202, 259, 294
ApaI	GGGCCC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	5 cut(s)	74, 95, 405, 532, 538
AspLEI	GCGC	3 cut(s)	478, 530, 532
AspS9I	GGNCC	4 cut(s)	181, 182, 191, 259
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	4 cut(s)	71, 122, 149, 355
BaeGI	GKGCMC	2 cut(s)	185, 287
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	5 cut(s)	61, 82, 417, 519, 525
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	7 cut(s)	75, 96, 205, 406, 533, 536, 539
BlsI	GCNGC	7 cut(s)	76, 97, 206, 407, 534, 537, 540
Bme1390I	CCNGG	2 cut(s)	162, 180
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmgT120I	GGNCC	4 cut(s)	181, 182, 191, 259
BmiI	GGNNCC	3 cut(s)	183, 193, 260
BmrFI	CCNGG	2 cut(s)	162, 180
BmsI	GCATC	2 cut(s)	25, 400
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	4 cut(s)	160, 199, 210, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 200, 211, 214
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	160, 199, 210, 297
BseGI	GGATG	2 cut(s)	40, 370
BseLI	CCNNNNNNNGG	4 cut(s)	166, 200, 211, 214
BseNI	ACTGG	1 cut(s)	262
BsePI	GCGCGC	1 cut(s)	528
BseRI	GAGGAG	2 cut(s)	385, 497
BseSI	GKGCMC	2 cut(s)	185, 287
BseXI	GCAGC	5 cut(s)	61, 82, 417, 519, 525
BseYI	CCCAGC	2 cut(s)	116, 250
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	5 cut(s)	183, 192, 204, 261, 296
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	166, 200, 211, 214
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	5 cut(s)	183, 192, 204, 261, 296
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	185, 287
Bsp143I	GATC	3 cut(s)	127, 384, 500
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	8 cut(s)	77, 93, 105, 144, 205, 223, 334, 536
BspANI	GGCC	5 cut(s)	183, 192, 204, 261, 296
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	183, 193, 260
BspPI	GGATC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	160, 199, 210, 297
BssHII	GCGCGC	1 cut(s)	528
BssMI	GATC	3 cut(s)	127, 384, 500
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	199, 210
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	287, 316, 530
BstDSI	CCRYGG	2 cut(s)	210, 297
BstF5I	GGATG	2 cut(s)	40, 370
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	3 cut(s)	478, 530, 532
BstKTI	GATC	3 cut(s)	130, 387, 503
BstMBI	GATC	3 cut(s)	127, 384, 500
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 21, 104, 189, 538
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	160, 178
BstSLI	GKGCMC	2 cut(s)	185, 287
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	5 cut(s)	61, 82, 417, 519, 525
BsuRI	GGCC	5 cut(s)	183, 192, 204, 261, 296
BtgI	CCRYGG	2 cut(s)	210, 297
BtsCI	GGATG	2 cut(s)	40, 370
Cac8I	GCNNGC	3 cut(s)	287, 316, 530
CfoI	GCGC	3 cut(s)	478, 530, 532
Cfr13I	GGNCC	4 cut(s)	181, 182, 191, 259
Csp6I	GTAC	2 cut(s)	232, 380
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	3 cut(s)	211, 388, 465
CviQI	GTAC	2 cut(s)	232, 380
DpnI	GATC	3 cut(s)	129, 386, 502
DpnII	GATC	3 cut(s)	127, 384, 500
DriI	GACNNNNNGTC	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	202
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EciI	GGCGGA	2 cut(s)	94, 133
Eco130I	CCWWGG	2 cut(s)	199, 210
Eco24I	GRGCYC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	199, 210
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	2 cut(s)	199, 210
FaeI	CATG	3 cut(s)	214, 391, 468
FaiI	YATR	5 cut(s)	135, 212, 389, 437, 466
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	3 cut(s)	210, 387, 464
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	7 cut(s)	75, 96, 205, 406, 533, 536, 539
FokI	GGATG	2 cut(s)	47, 377
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	7 cut(s)	75, 96, 205, 406, 533, 536, 539
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	3 cut(s)	477, 529, 531
GluI	GCNGC	7 cut(s)	75, 96, 205, 406, 533, 536, 539
GsaI	CCCAGC	2 cut(s)	120, 254
HaeIII	GGCC	5 cut(s)	183, 192, 204, 261, 296
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	3 cut(s)	478, 530, 532
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	214, 391, 468
Hin6I	GCGC	3 cut(s)	476, 528, 530
HinP1I	GCGC	3 cut(s)	476, 528, 530
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	4 cut(s)	71, 122, 149, 355
Hpy166II	GTNNAC	2 cut(s)	285, 346
Hpy8I	GTNNAC	2 cut(s)	285, 346
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	25, 150
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	219, 230
HpyCH4V	TGCA	3 cut(s)	285, 318, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 21, 104, 189, 538
HpySE526I	ACGT	2 cut(s)	219, 230
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	214, 391, 468
HspAI	GCGC	3 cut(s)	476, 528, 530
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 384, 500
LmnI	GCTCC	3 cut(s)	247, 430, 525
Lsp1109I	GCAGC	5 cut(s)	61, 82, 417, 519, 525
LweI	GCATC	2 cut(s)	25, 400
MaeII	ACGT	2 cut(s)	219, 230
MaeIII	GTNAC	2 cut(s)	59, 271
MalI	GATC	3 cut(s)	129, 386, 502
MboI	GATC	3 cut(s)	127, 384, 500
MboII	GAAGA	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	185, 287
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	9 cut(s)	157, 208, 355, 363, 366, 370, 393, 432, 475
Mph1103I	ATGCAT	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	95, 538
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	162, 180
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	5 cut(s)	12, 21, 104, 189, 538
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	127, 384, 500
NlaIII	CATG	3 cut(s)	214, 391, 468
NlaIV	GGNNCC	3 cut(s)	183, 193, 260
NmuCI	GTSAC	1 cut(s)	59
NsbI	TGCGCA	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	393
PauI	GCGCGC	1 cut(s)	528
PkrI	GCNGC	7 cut(s)	76, 97, 206, 407, 534, 537, 540
Ppu21I	YACGTR	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	2 cut(s)	116, 250
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	183, 193, 260
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	4 cut(s)	181, 182, 191, 259
PteI	GCGCGC	1 cut(s)	528
RsaI	GTAC	2 cut(s)	233, 381
RsaNI	GTAC	2 cut(s)	232, 380
SatI	GCNGC	7 cut(s)	75, 96, 205, 406, 533, 536, 539
Sau3AI	GATC	3 cut(s)	127, 384, 500
Sau96I	GGNCC	4 cut(s)	181, 182, 191, 259
ScrFI	CCNGG	2 cut(s)	162, 180
SduI	GDGCHC	2 cut(s)	185, 287
SetI	ASST	9 cut(s)	142, 171, 222, 233, 252, 342, 381, 435, 491
SfaNI	GCATC	2 cut(s)	25, 400
SfiI	GGCCNNNNNGGCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	8 cut(s)	77, 93, 105, 144, 205, 223, 334, 536
StyD4I	CCNGG	2 cut(s)	160, 178
StyI	CCWWGG	2 cut(s)	199, 210
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	222, 233
TaqI	TCGA	1 cut(s)	494
TasI	AATT	1 cut(s)	100
TauI	GCSGC	2 cut(s)	207, 538
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	74, 95, 405, 532, 538
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	538
VneI	GTGCAC	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
ZraI	GACGTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.