Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347277.1

Orthogroup ID

OG0013786

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 873

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgctatacattcttttgagtggtgttcctcctttctgggcagaatcggaacatgggatattcaacgcaatattacgtggtcacctcgacttttcaagcgacccatggcctgcaatatcagttcaagcaaaggatcttgtgaggaagatgttgaattcagatcccaagcagagattgacagccttccaagttctaagtcatccatggatcaaggaggatggtgaagcaccagatgttcctctcgacaatgctgtgctcagcaggctcaaacagttcaaagcaatgaatcagtttaagaaagttgcccttcgggttatcgccggttgcttatcagaggaagaaatcatgggattgaaagagatgttcaagagcatagatacagacaacagtgggactatcacacttgaagagctcaagcaaggtcttgctaagcaaggcaccaagttatctgaacacgaagctaaacaactaatggaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

5.82

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12180 AT5G19360
fragaria_vesca	FvH4_3g27800
malus_domestica	MD03G1165100.v1.1 MD11G1184100.v1.1
prunus_persica	Prupe.4G263600_v2.0.a1
pyrus_communis	pycom12g08860
rosa_chinensis	RchiOBHm_Chr5g0050441
rosa_laevigata	RLG00000034702
rosa_multiflora	Rmu_co8347277.1_g000001 Rmu_sc0003202.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030430
rosa_rugosa	Rorug05G0261000
rosa_samantha	Rh5AG332700 Rh5CG370000 Rh5DG355500
rosa_wichuraiana	Rw5G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AclWI	GGATC	3 cut(s)	141, 155, 215
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	8 cut(s)	64, 96, 125, 154, 277, 355, 367, 407
AluBI	AGCT	3 cut(s)	412, 461, 479
AluI	AGCT	3 cut(s)	412, 461, 479
Alw21I	GWGCWC	2 cut(s)	258, 414
AlwI	GGATC	3 cut(s)	141, 155, 215
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	74, 233
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	258, 414
BccI	CCATC	1 cut(s)	212
BlpI	GCTNAGC	2 cut(s)	257, 429
BmiI	GGNNCC	1 cut(s)	439
Bpu1102I	GCTNAGC	2 cut(s)	257, 429
BpuEI	CTTGAG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	104, 203
Bse118I	RCCGGY	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	104, 203
BseGI	GGATG	2 cut(s)	199, 223
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	2 cut(s)	258, 414
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	258, 414
Bsp143I	GATC	3 cut(s)	133, 160, 207
Bsp1720I	GCTNAGC	2 cut(s)	257, 429
Bsp19I	CCATGG	2 cut(s)	104, 203
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	439
BspPI	GGATC	3 cut(s)	141, 155, 215
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	104, 203
BssMI	GATC	3 cut(s)	133, 160, 207
BssT1I	CCWWGG	2 cut(s)	104, 203
Bst4CI	ACNGT	2 cut(s)	273, 389
Bst6I	CTCTTC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	111, 263
BstDEI	CTNAG	3 cut(s)	194, 257, 429
BstDSI	CCRYGG	2 cut(s)	104, 203
BstEII	GGTNACC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	199, 223
BstKTI	GATC	3 cut(s)	136, 163, 210
BstMBI	GATC	3 cut(s)	133, 160, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	133, 160
BstYI	RGATCY	2 cut(s)	133, 160
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	104, 203
BtsCI	GGATG	2 cut(s)	199, 223
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	111, 263
Cfr10I	RCCGGY	1 cut(s)	320
CviAII	CATG	4 cut(s)	53, 105, 204, 346
CviJI	RGCY	6 cut(s)	109, 182, 265, 412, 461, 479
CviKI_1	RGCY	6 cut(s)	109, 182, 265, 412, 461, 479
DdeI	CTNAG	3 cut(s)	194, 257, 429
DpnI	GATC	3 cut(s)	135, 162, 209
DpnII	GATC	3 cut(s)	133, 160, 207
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	104, 203
Eco24I	GRGCYC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	412
Eco91I	GGTNACC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	104, 203
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	104, 203
FaeI	CATG	4 cut(s)	56, 108, 207, 349
FaiI	YATR	6 cut(s)	7, 54, 106, 205, 347, 374
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	52, 104, 203, 345
FokI	GGATG	2 cut(s)	186, 230
FriOI	GRGCYC	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	4 cut(s)	56, 108, 207, 349
HinfI	GANTC	2 cut(s)	44, 286
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	74, 233
Hpy188I	TCNGA	4 cut(s)	49, 160, 334, 451
Hpy188III	TCNNGA	2 cut(s)	242, 367
HpyAV	CCTTC	2 cut(s)	193, 317
HpyCH4III	ACNGT	2 cut(s)	273, 389
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	194, 257, 429
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	4 cut(s)	56, 108, 207, 349
Kzo9I	GATC	3 cut(s)	133, 160, 207
LguI	GCTCTTC	1 cut(s)	402
LpnPI	CCDG	5 cut(s)	22, 123, 243, 247, 334
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	135, 162, 209
MboI	GATC	3 cut(s)	133, 160, 207
MboII	GAAGA	3 cut(s)	157, 350, 419
MflI	RGATCY	2 cut(s)	133, 160
MhlI	GDGCHC	2 cut(s)	258, 414
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	6 cut(s)	39, 95, 135, 208, 249, 328
MseI	TTAA	1 cut(s)	294
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	262
NcoI	CCATGG	2 cut(s)	104, 203
NdeII	GATC	3 cut(s)	133, 160, 207
NlaIII	CATG	4 cut(s)	56, 108, 207, 349
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	44, 286
Ppu21I	YACGTR	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	133, 160
SacI	GAGCTC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	133, 160, 207
SduI	GDGCHC	2 cut(s)	258, 414
SetI	ASST	5 cut(s)	79, 87, 414, 424, 463
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	154
SspI	AATATT	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	104, 203
TaaI	ACNGT	2 cut(s)	273, 389
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	87, 243
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	44, 286
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.