Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013786

Physical Location & Seq

Genomic Coordinates Reverse (-)

47267860 .. 47268597

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGCAACTGTTGCTCTCAACGCAACACCGAGGATGCCCCCAACGATGTAAAGGGAGACAACAATGGTGGCCTGGATAACAATGCCGATGTGACAAACAATTCTTCAGGCAACCATAATCCAGCCCCCCAGGGTCACAAGGCTCCTCCTGCATCCCCTCCACCTGGGGGAAAGCCTGCGAAAACAGGGCCTATTGGACCTGTTCTAGGGATGCCAATGGAGGATGTGCGTTCGACCTACGCTATCGGAAAGGAGCTGGGGCGGGGACAGTTTGGGGTGACGCACCTGTGCACACATAAACAGACGGGAGAGCAGTTTGCGTGCAAAACCATAGCCAAACGCAAGCTGGTGAATAAGGAAGACATAGAGGACGTGAGGAGGGAGGTTCAAATCATGCACCATTTGACAGGACAACTAAACATCGTGGAACTCAAGGGAGCTTATGAGGATAAGCAGTCCGTTCACCTGGTGATGGAGCTGTGTGCCGGTGGGGAGCTTTTTGACCGAATCATCTCTAAGGGGCATTACACGGAGCGTGCTGCAGCCGCCTTGTTAAGGACCATTGTTCAGATCGTGCACACCTGCCATTCCATGGGCGTCATCCATAGGGATCTCAAGCCTGAGAATTTCCTTCTGCTCAACAAAGACGAGAACTCTCCACTCAAGGCTACAGATTTCGGTCTATCAGTCTTTTACAAACAAGGTAATTTTATACAATCATTTATAATAAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

245

Amino Acids

26.75

Weight (kDa)

7.69

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 241	3e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 232	1.8e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12180 AT5G19360
fragaria_vesca	FvH4_3g27800
malus_domestica	MD03G1165100.v1.1 MD11G1184100.v1.1
prunus_persica	Prupe.4G263600_v2.0.a1
pyrus_communis	pycom12g08860
rosa_chinensis	RchiOBHm_Chr5g0050441
rosa_laevigata	RLG00000034702
rosa_multiflora	Rmu_co8347277.1_g000001 Rmu_sc0003202.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030430
rosa_rugosa	Rorug05G0261000
rosa_samantha	Rh5AG332700 Rh5CG370000 Rh5DG355500
rosa_wichuraiana	Rw5G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	725
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	2 cut(s)	262, 546
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	469
AfiI	CCNNNNNNNGG	6 cut(s)	164, 167, 206, 472, 555, 592
AgsI	TTSAA	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	4 cut(s)	72, 129, 163, 465
AluBI	AGCT	5 cut(s)	256, 346, 440, 478, 496
AluI	AGCT	5 cut(s)	256, 346, 440, 478, 496
Alw21I	GWGCWC	2 cut(s)	293, 579
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	2 cut(s)	289, 575
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	2 cut(s)	70, 188
ApaLI	GTGCAC	2 cut(s)	289, 575
ApeKI	GCWGC	2 cut(s)	539, 542
ApoI	RAATTY	1 cut(s)	625
AspS9I	GGNCC	3 cut(s)	188, 197, 558
AsuHPI	GGTGA	4 cut(s)	289, 361, 455, 481
AvaII	GGWCC	2 cut(s)	197, 558
BaeGI	GKGCMC	2 cut(s)	293, 579
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	293, 579
BbvI	GCAGC	2 cut(s)	526, 554
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	4 cut(s)	74, 131, 165, 467
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	206, 736
BfmI	CTRYAG	2 cut(s)	540, 669
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	540, 543, 546
BlsI	GCNGC	3 cut(s)	541, 544, 547
Bme1390I	CCNGG	4 cut(s)	74, 131, 165, 467
Bme18I	GGWCC	2 cut(s)	197, 558
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	188, 197, 558
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	4 cut(s)	74, 131, 165, 467
BmsI	GCATC	3 cut(s)	25, 161, 201
BpiI	GAAGAC	1 cut(s)	366
BpuEI	CTTGAG	3 cut(s)	416, 599, 647
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	30, 129, 130, 164, 591
Bsc4I	CCNNNNNNNGG	6 cut(s)	164, 167, 206, 472, 555, 592
Bse118I	RCCGGY	1 cut(s)	485
BseBI	CCWGG	4 cut(s)	74, 131, 165, 467
BseDI	CCNNGG	5 cut(s)	30, 129, 130, 164, 591
BseGI	GGATG	5 cut(s)	40, 152, 216, 229, 600
BseLI	CCNNNNNNNGG	6 cut(s)	164, 167, 206, 472, 555, 592
BseMII	CTCAG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	135, 391
BseSI	GKGCMC	2 cut(s)	293, 579
BseXI	GCAGC	2 cut(s)	526, 554
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	2 cut(s)	72, 190
BsiHKAI	GWGCWC	2 cut(s)	293, 579
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	6 cut(s)	164, 167, 206, 472, 555, 592
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	72, 190
Bsp1286I	GDGCHC	2 cut(s)	293, 579
Bsp143I	GATC	2 cut(s)	570, 610
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	2 cut(s)	262, 546
BspANI	GGCC	2 cut(s)	72, 190
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	5 cut(s)	30, 129, 130, 164, 591
BssMI	GATC	2 cut(s)	570, 610
BssNI	GRCGYC	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	4 cut(s)	74, 131, 165, 467
Bst4CI	ACNGT	2 cut(s)	11, 270
BstACI	GRCGYC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	177, 322, 344, 537
BstDEI	CTNAG	2 cut(s)	516, 621
BstDSI	CCRYGG	1 cut(s)	591
BstENI	CCTNNNNNAGG	2 cut(s)	204, 553
BstF5I	GGATG	5 cut(s)	40, 152, 216, 229, 600
BstKTI	GATC	2 cut(s)	573, 613
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	570, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 21, 149, 545
BstNI	CCWGG	4 cut(s)	74, 131, 165, 467
BstSCI	CCNGG	4 cut(s)	72, 129, 163, 465
BstSFI	CTRYAG	2 cut(s)	540, 669
BstSLI	GKGCMC	2 cut(s)	293, 579
BstV1I	GCAGC	2 cut(s)	526, 554
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	72, 190
BtgI	CCRYGG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	5 cut(s)	40, 152, 216, 229, 600
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	4 cut(s)	177, 322, 344, 537
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	188, 197, 558
CseI	GACGC	2 cut(s)	289, 586
CsiI	ACCWGGT	1 cut(s)	465
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	2 cut(s)	394, 592
DdeI	CTNAG	2 cut(s)	516, 621
DpnI	GATC	2 cut(s)	572, 612
DpnII	GATC	2 cut(s)	570, 610
DraIII	CACNNNGTG	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	197, 558
Eco57I	CTGAAG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	2 cut(s)	204, 553
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	4 cut(s)	72, 129, 163, 465
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	397, 595
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	393, 591
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	540, 543, 546
FokI	GGATG	5 cut(s)	47, 139, 223, 236, 587
Fsp4HI	GCNGC	3 cut(s)	540, 543, 546
FspBI	CTAG	2 cut(s)	206, 736
GluI	GCNGC	3 cut(s)	540, 543, 546
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	72, 190
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	2 cut(s)	289, 586
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	2 cut(s)	397, 595
HinfI	GANTC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	4 cut(s)	289, 361, 455, 481
Hpy166II	GTNNAC	3 cut(s)	291, 463, 577
Hpy188I	TCNGA	2 cut(s)	248, 570
Hpy8I	GTNNAC	3 cut(s)	291, 463, 577
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	11, 270
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	6 cut(s)	152, 291, 324, 397, 542, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 21, 149, 545
HpyF3I	CTNAG	2 cut(s)	516, 621
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	2 cut(s)	397, 595
Kzo9I	GATC	2 cut(s)	570, 610
LmnI	GCTCC	6 cut(s)	148, 253, 437, 475, 493, 532
Lsp1109I	GCAGC	2 cut(s)	526, 554
LweI	GCATC	3 cut(s)	25, 161, 201
MabI	ACCWGGT	1 cut(s)	465
MaeI	CTAG	2 cut(s)	206, 736
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	91, 134, 277
MalI	GATC	2 cut(s)	572, 612
MboI	GATC	2 cut(s)	570, 610
MboII	GAAGA	2 cut(s)	96, 371
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	293, 579
MluCI	AATT	3 cut(s)	100, 625, 706
MnlI	CCTC	9 cut(s)	25, 156, 168, 214, 361, 369, 372, 376, 439
MseI	TTAA	1 cut(s)	554
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	4 cut(s)	74, 131, 165, 467
MvaI	CCWGG	4 cut(s)	74, 131, 165, 467
MwoI	GCNNNNNNNGC	4 cut(s)	12, 21, 149, 545
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	2 cut(s)	570, 610
NlaIII	CATG	2 cut(s)	397, 595
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	3 cut(s)	91, 134, 277
PaqCI	CACCTGC	1 cut(s)	590
PasI	CCCWGGG	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	507
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	3 cut(s)	541, 544, 547
PsiI	TTATAA	1 cut(s)	725
Psp6I	CCWGG	4 cut(s)	72, 129, 163, 465
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	4 cut(s)	72, 129, 163, 465
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	188, 197, 558
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	3 cut(s)	540, 543, 546
Sau3AI	GATC	2 cut(s)	570, 610
Sau96I	GGNCC	3 cut(s)	188, 197, 558
ScrFI	CCNGG	4 cut(s)	74, 131, 165, 467
SduI	GDGCHC	2 cut(s)	293, 579
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	3 cut(s)	25, 161, 201
SfcI	CTRYAG	2 cut(s)	540, 669
SinI	GGWCC	2 cut(s)	197, 558
SmlI	CTYRAG	3 cut(s)	431, 614, 662
SmoI	CTYRAG	3 cut(s)	431, 614, 662
Sse9I	AATT	3 cut(s)	100, 625, 706
SsiI	CCGC	2 cut(s)	262, 546
SspMI	CTAG	2 cut(s)	206, 736
StyD4I	CCNGG	4 cut(s)	72, 129, 163, 465
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	11, 270
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	233
TaqII	GACCGA	2 cut(s)	519, 668
TasI	AATT	3 cut(s)	100, 625, 706
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	3 cut(s)	91, 134, 277
TseI	GCWGC	2 cut(s)	539, 542
Tsp45I	GTSAC	3 cut(s)	91, 134, 277
TspGWI	ACGGA	2 cut(s)	448, 545
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	2 cut(s)	289, 575
VpaK11BI	GGWCC	2 cut(s)	197, 558
XagI	CCTNNNNNAGG	2 cut(s)	204, 553
XapI	RAATTY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	2 cut(s)	206, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.