pycom12g09170

Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
11057167 .. 11060995
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09170.6

Sequence Viewer

Length: 1491 bp
ATGTCAATCCTATCAGTTTCATCATCATCCTCATCATCCGTAGCCGTTGGATTCTGTAATTCCCACATACACGCCCTTCCCAATGCCTCATTTCTCACCCAACTCCCACTCCCAGTCGTTGGGGCTCACCCAGCAAATGACCAGAAGAATAAGAAGAAGCAGAAGAGGAGCGCCGCCACCATTGGAGGAGGAGTCATGGCCACCAAGCTCACAGTCCTCAGGACCCCACGCACTCTTTTCTTTGATGAATTGTTGAAACGCAGTAGCTTCCAAGCGAAAACTAGAGATCCTCTGTGTTTCCGGGCACAATATATCTTATCCACTACATTGCATTCAACATCAACAGCAACAACTACAGTGCTTGATTTGGAGAGGCTCAGATTACCGTCTTTAGAAGTTAATTCTGATTCTCTGGCTTCAAGTAGACCGTGGACATACACAGGGGCAATCAGTCCTCTGACTGAGGCGAATTTTGGAGCAACTTTAGCTACAGAAACTCTTCTCACGAGTGAAGAGGCTGTAATAGAAGCTGCTGCCGCCGAAGCTGTCACTCTTGCAAAAGCGGCTCTGAAGGTTGCAAAGGATGTGGCTATGCTGATGGAAACCGAACAGGTTTCTAGAGTAGGAGCTTCCATGGGAGCTGAAACTGCATTTGTGGAAGATCATTTCATTCAATCTGCAATAAAAGAGTTGGAAGAAGTGGAGCAAACAAATGAAGAATTTGAACTTCTGCAGGAGCAACTTTCCAAGGGTATAACTGCAAAATCGAGTCGTCAAACGGAAAGGAAGGCTAGGAGAGCAAAAGCAGCAGAAAAGGCTGCTGCAAGTGTTGTGTCCGTGAAGTCTGGTTCAGCCACTAGAAAAAAGCGTTCTTCGGTACAAGAAATAGACCACTCTGATCCATTGCGTTATTTGAGATCAACTACCCACACTTCTCGCCTGCTTACTGCAAACGAAGAAATTGAGTTTTCTGAAGGAATCCAGGAACTACTGAAACTGGAAAAGCTGCATGAGGAGCTTGCACAAAGATGTGGTGGTCAGCCCACCATTGCACAATGGGCTGCAGCTGCAGGAGTTGATCAGAAGACTTTGAGGAAGTGTGTAAACTATGGTATTCTGTGCAAAGACAAAATGATCAAGAGCAACATAAGGCTTGTAATATCAATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTTCAAGATCTTGTGCAGGAAGGATGTCGAGGCCTTGTAAGAGGTGCAGAGAAATTTGACGCTTCAAAGGGTTTTAAGTTCTCAACCTATGCACACTGGTGGATTAAACAGGCTGTTCGAAAATCTCTTTCTGACCAGTCCAGAACAATTCGCTTACCCTTTCACATGGTGGAGGCGACATATAGAGTTAGAGAGGCTAAAAAGCAACTGTACAGTTTAAATGGAAGACATCCTAATGATGAAGAAGTTGCAGAGACAACAGGGCTGTCGATGAAAAGGCTTTCTGCTGTATAA

Protein Analysis

497

Amino Acids

54.43

Weight (kDa)

9.34

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AccI GTMKAC 1 cut(s) 424
AciI CCGC 3 cut(s) 174, 537, 563
AclWI GGATC 2 cut(s) 281, 893
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 3 cut(s) 469, 719, 1250
AcuI CTGAAG 2 cut(s) 590, 993
AdeI CACNNNGTG 1 cut(s) 1366
AfaI GTAC 2 cut(s) 879, 1409
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 7 cut(s) 256, 336, 420, 674, 725, 1202, 1263
AjnI CCWGG 1 cut(s) 981
AleI CACNNNNGTG 1 cut(s) 1294
Alw26I GTCTC 1 cut(s) 1445
AlwI GGATC 2 cut(s) 281, 893
AoxI GGCC 2 cut(s) 198, 1228
ApeKI GCWGC 9 cut(s) 530, 533, 806, 818, 821, 1006, 1061, 1064, 1067
ApoI RAATTY 3 cut(s) 469, 719, 1250
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 88, 119
AsuII TTCGAA 1 cut(s) 1315
AvaII GGWCC 1 cut(s) 222
AxyI CCTNAGG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 1 cut(s) 127
BauI CACGAG 1 cut(s) 505
BbsI GAAGAC 2 cut(s) 1091, 1429
BbvI GCAGC 9 cut(s) 517, 520, 805, 808, 818, 993, 1048, 1054, 1076
BccI CCATC 1 cut(s) 592
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 983
BclI TGATCA 2 cut(s) 1078, 1134
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 1445
BfaI CTAG 4 cut(s) 282, 618, 792, 858
BfmI CTRYAG 5 cut(s) 354, 489, 731, 1062, 1068
BfoI RGCGCY 1 cut(s) 174
BglII AGATCT 1 cut(s) 1204
Bme1390I CCNGG 2 cut(s) 302, 983
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 302, 983
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 1091, 1429
Bpu14I TTCGAA 1 cut(s) 1315
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 428, 633, 747
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 113, 1002, 1298, 1333
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 3 cut(s) 326, 902, 1047
BseBI CCWGG 1 cut(s) 983
BseDI CCNNGG 3 cut(s) 428, 633, 747
BseGI GGATG 6 cut(s) 26, 35, 589, 1197, 1226, 1426
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 3 cut(s) 326, 902, 1047
BseMII CTCAG 3 cut(s) 232, 391, 453
BseNI ACTGG 4 cut(s) 113, 1002, 1298, 1333
BseRI GAGGAG 4 cut(s) 181, 201, 204, 1028
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 9 cut(s) 517, 520, 805, 808, 818, 993, 1048, 1054, 1076
BseYI CCCAGC 2 cut(s) 130, 1187
BsgI GTGCAG 2 cut(s) 1232, 1263
BshFI GGCC 2 cut(s) 200, 1230
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 1445
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 2 cut(s) 200, 1230
Bsp119I TTCGAA 1 cut(s) 1315
Bsp1286I GDGCHC 2 cut(s) 127, 307
Bsp1407I TGTACA 1 cut(s) 1407
Bsp143I GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 3 cut(s) 174, 537, 563
BspANI GGCC 2 cut(s) 200, 1230
BspCNI CTCAG 3 cut(s) 231, 390, 454
BspLI GGNNCC 1 cut(s) 224
BspMAI CTGCAG 3 cut(s) 735, 1066, 1072
BspPI GGATC 2 cut(s) 281, 893
BspT104I TTCGAA 1 cut(s) 1315
BsrDI GCAATG 3 cut(s) 326, 902, 1047
BsrGI TGTACA 1 cut(s) 1407
BsrI ACTGG 4 cut(s) 113, 1002, 1298, 1333
BssECI CCNNGG 3 cut(s) 428, 633, 747
BssMI GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 633, 747
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 983
Bst4CI ACNGT 6 cut(s) 214, 358, 387, 429, 1407, 1412
Bst6I CTCTTC 3 cut(s) 158, 504, 507
BstAUI TGTACA 1 cut(s) 1407
BstBI TTCGAA 1 cut(s) 1315
BstC8I GCNNGC 2 cut(s) 941, 1020
BstDEI CTNAG 3 cut(s) 218, 377, 462
BstDSI CCRYGG 2 cut(s) 428, 633
BstF5I GGATG 6 cut(s) 26, 35, 589, 1197, 1226, 1426
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 7 cut(s) 289, 664, 901, 920, 1081, 1137, 1207
BstMAI GTCTC 1 cut(s) 1445
BstMBI GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
BstNI CCWGG 1 cut(s) 983
BstSCI CCNGG 2 cut(s) 300, 981
BstSFI CTRYAG 5 cut(s) 354, 489, 731, 1062, 1068
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 9 cut(s) 517, 520, 805, 808, 818, 993, 1048, 1054, 1076
BstV2I GAAGAC 2 cut(s) 1091, 1429
BstX2I RGATCY 2 cut(s) 286, 1204
BstYI RGATCY 2 cut(s) 286, 1204
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 200, 1230
BtgI CCRYGG 2 cut(s) 428, 633
BtsCI GGATG 6 cut(s) 26, 35, 589, 1197, 1226, 1426
BtsIMutI CAGTG 2 cut(s) 363, 1291
Cac8I GCNNGC 2 cut(s) 941, 1020
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 1265
Csp6I GTAC 2 cut(s) 878, 1408
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 4 cut(s) 196, 634, 1010, 1363
CviQI GTAC 2 cut(s) 878, 1408
DdeI CTNAG 3 cut(s) 218, 377, 462
DpnI GATC 7 cut(s) 288, 663, 900, 919, 1080, 1136, 1206
DpnII GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
DraI TTTAAA 1 cut(s) 1416
DraIII CACNNNGTG 1 cut(s) 1366
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 3 cut(s) 158, 504, 507
EarI CTCTTC 3 cut(s) 158, 504, 507
Eco130I CCWWGG 2 cut(s) 633, 747
Eco147I AGGCCT 1 cut(s) 1230
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 590, 993
Eco81I CCTNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 981
EcoT14I CCWWGG 2 cut(s) 633, 747
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 633, 747
FaeI CATG 4 cut(s) 199, 637, 1013, 1366
FatI CATG 4 cut(s) 195, 633, 1009, 1362
FbaI TGATCA 2 cut(s) 1078, 1134
FblI GTMKAC 1 cut(s) 424
FokI GGATG 6 cut(s) 13, 22, 596, 1204, 1233, 1413
FriOI GRGCYC 1 cut(s) 127
FspBI CTAG 4 cut(s) 282, 618, 792, 858
GlaI GCGC 1 cut(s) 172
GsaI CCCAGC 2 cut(s) 134, 1191
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 2 cut(s) 200, 1230
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 1265
HhaI GCGC 1 cut(s) 173
Hin1II CATG 4 cut(s) 199, 637, 1013, 1366
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 6 cut(s) 51, 192, 407, 769, 978, 1195
HpaII CCGG 1 cut(s) 301
HphI GGTGA 2 cut(s) 88, 119
Hpy166II GTNNAC 3 cut(s) 425, 432, 1105
Hpy188I TCNGA 8 cut(s) 380, 406, 459, 570, 898, 973, 1083, 1330
Hpy188III TCNNGA 6 cut(s) 220, 505, 618, 1138, 1202, 1338
Hpy8I GTNNAC 3 cut(s) 425, 432, 1105
HpyAV CCTTC 5 cut(s) 86, 565, 781, 968, 1211
HpyCH4III ACNGT 6 cut(s) 214, 358, 387, 429, 1407, 1412
HpyF3I CTNAG 3 cut(s) 218, 377, 462
Hsp92II CATG 4 cut(s) 199, 637, 1013, 1366
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 2 cut(s) 1078, 1134
Kzo9I GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
LmnI GCTCC 8 cut(s) 168, 476, 626, 638, 703, 736, 1015, 1184
Lsp1109I GCAGC 9 cut(s) 517, 520, 805, 808, 818, 993, 1048, 1054, 1076
MaeI CTAG 4 cut(s) 282, 618, 792, 858
MaeIII GTNAC 1 cut(s) 547
MalI GATC 7 cut(s) 288, 663, 900, 919, 1080, 1136, 1206
MboI GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 2 cut(s) 286, 1204
MhlI GDGCHC 2 cut(s) 127, 307
MlsI TGGCCA 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 201, 778
MmeI TCCRAC 2 cut(s) 28, 672
Mox20I TGGCCA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 399, 1272, 1302, 1415
MslI CAYNNNNRTG 3 cut(s) 1027, 1294, 1431
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 302, 983
MunI CAATTG 1 cut(s) 1164
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 983
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 633
NdeII GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
NlaIII CATG 4 cut(s) 199, 637, 1013, 1366
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 547
NspV TTCGAA 1 cut(s) 1315
OliI CACNNNNGTG 1 cut(s) 1294
PceI AGGCCT 1 cut(s) 1230
PctI GAATGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 51, 407, 978, 1195
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 981
PleI GAGTC 2 cut(s) 200, 777
PpsI GAGTC 2 cut(s) 200, 777
PpuMI RGGWCCY 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 981
PspFI CCCAGC 2 cut(s) 130, 1187
PspGI CCWGG 1 cut(s) 981
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
PstI CTGCAG 3 cut(s) 735, 1066, 1072
PsuI RGATCY 2 cut(s) 286, 1204
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 2 cut(s) 879, 1409
RsaNI GTAC 2 cut(s) 878, 1408
RseI CAYNNNNRTG 3 cut(s) 1027, 1294, 1431
SaqAI TTAA 4 cut(s) 399, 1272, 1302, 1415
Sau3AI GATC 7 cut(s) 286, 661, 898, 917, 1078, 1134, 1204
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 2 cut(s) 201, 778
ScrFI CCNGG 2 cut(s) 302, 983
SduI GDGCHC 2 cut(s) 127, 307
SfcI CTRYAG 5 cut(s) 354, 489, 731, 1062, 1068
SfuI TTCGAA 1 cut(s) 1315
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 1027, 1294, 1431
SseBI AGGCCT 1 cut(s) 1230
SsiI CCGC 3 cut(s) 174, 537, 563
SspMI CTAG 4 cut(s) 282, 618, 792, 858
StuI AGGCCT 1 cut(s) 1230
StyD4I CCNGG 2 cut(s) 300, 981
StyI CCWWGG 2 cut(s) 633, 747
TaaI ACNGT 6 cut(s) 214, 358, 387, 429, 1407, 1412
TaqI TCGA 4 cut(s) 767, 1225, 1315, 1466
TatI WGTACW 1 cut(s) 1407
TauI GCSGC 3 cut(s) 176, 539, 566
TfiI GAWTC 4 cut(s) 51, 407, 978, 1195
Tru1I TTAA 4 cut(s) 399, 1272, 1302, 1415
Tru9I TTAA 4 cut(s) 399, 1272, 1302, 1415
TscAI CASTG 2 cut(s) 363, 1298
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 9 cut(s) 530, 533, 806, 818, 821, 1006, 1061, 1064, 1067
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 7 cut(s) 9, 261, 658, 729, 1208, 1452, 1484
TspGWI ACGGA 3 cut(s) 28, 794, 826
TspRI CASTG 2 cut(s) 363, 1298
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 3 cut(s) 469, 719, 1250
XbaI TCTAGA 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 4 cut(s) 282, 618, 792, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.