Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08540 |
| fragaria_vesca | FvH4_1g29160 FvH4_1g29160 |
| malus_domestica | MD12G1111900.v1.1 MD14G1100900.v1.1 |
| prunus_persica | Prupe.7G021900_v2.0.a1 Prupe.7G021900_v2.0.a1 Prupe.7G021900_v2.0.a1 Prupe.7G021900_v2.0.a1 |
| pyrus_communis | pycom12g09170 pycom14g08810 |
| rosa_chinensis | RchiOBHm_Chr3g0494351 RchiOBHm_Chr3g0494481 |
| rosa_laevigata | RLG00000022672 |
| rosa_multiflora | Rmu_sc0000152.1_g000008 |
| rosa_roxburghii | Rroxscaffold_6G00391100 |
| rosa_rugosa | Rorug03G0265600 |
| rosa_samantha | Rh3BG350900 Rh3CG347600 Rh3DG350200 |
| rosa_wichuraiana | Rw3G027560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1669 |
| Acc36I | ACCTGC | 1 cut(s) | 1669 |
| AccB1I | GGYRCC | 1 cut(s) | 783 |
| AccI | GTMKAC | 1 cut(s) | 900 |
| AccII | CGCG | 1 cut(s) | 237 |
| AccIII | TCCGGA | 1 cut(s) | 158 |
| AciI | CCGC | 5 cut(s) | 125, 235, 462, 488, 1111 |
| AclWI | GGATC | 4 cut(s) | 681, 905, 1035, 1577 |
| AcsI | RAATTY | 2 cut(s) | 731, 1262 |
| AcuI | CTGAAG | 6 cut(s) | 486, 515, 726, 987, 1623, 1823 |
| AcyI | GRCGYC | 1 cut(s) | 784 |
| AdeI | CACNNNGTG | 1 cut(s) | 1378 |
| AfaI | GTAC | 2 cut(s) | 41, 1650 |
| AgsI | TTSAA | 6 cut(s) | 261, 686, 737, 864, 977, 1214 |
| AjnI | CCWGG | 1 cut(s) | 1020 |
| Alw21I | GWGCWC | 1 cut(s) | 303 |
| Alw26I | GTCTC | 4 cut(s) | 73, 1338, 1624, 1664 |
| AlwI | GGATC | 4 cut(s) | 681, 905, 1035, 1577 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 458, 610, 1586 |
| Aor13HI | TCCGGA | 1 cut(s) | 158 |
| AoxI | GGCC | 4 cut(s) | 153, 367, 376, 1240 |
| ApaI | GGGCCC | 1 cut(s) | 371 |
| ApoI | RAATTY | 2 cut(s) | 731, 1262 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 423, 1622 |
| AspLEI | GCGC | 2 cut(s) | 239, 786 |
| AspS9I | GGNCC | 4 cut(s) | 367, 368, 377, 576 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 1693 |
| AsuII | TTCGAA | 1 cut(s) | 1327 |
| AvaII | GGWCC | 1 cut(s) | 576 |
| BaeGI | GKGCMC | 1 cut(s) | 371 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1108, 1141 |
| BanI | GGYRCC | 1 cut(s) | 783 |
| BanII | GRGCYC | 3 cut(s) | 303, 371, 604 |
| BauI | CACGAG | 1 cut(s) | 1220 |
| BbsI | GAAGAC | 4 cut(s) | 1103, 1441, 1611, 1727 |
| Bbv12I | GWGCWC | 1 cut(s) | 303 |
| BccI | CCATC | 4 cut(s) | 661, 1683, 1703, 1741 |
| BceAI | ACGGC | 1 cut(s) | 1178 |
| BciT130I | CCWGG | 1 cut(s) | 1022 |
| BciVI | GTATCC | 1 cut(s) | 231 |
| BclI | TGATCA | 3 cut(s) | 1090, 1342, 1683 |
| BcoDI | GTCTC | 4 cut(s) | 73, 1338, 1624, 1664 |
| BfaI | CTAG | 3 cut(s) | 216, 948, 1521 |
| BfmI | CTRYAG | 2 cut(s) | 743, 1074 |
| BfoI | RGCGCY | 1 cut(s) | 787 |
| BfuAI | ACCTGC | 1 cut(s) | 1669 |
| BfuI | GTATCC | 1 cut(s) | 231 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 375 |
| BglII | AGATCT | 1 cut(s) | 1216 |
| BlpI | GCTNAGC | 1 cut(s) | 603 |
| Bme1390I | CCNGG | 1 cut(s) | 1022 |
| Bme18I | GGWCC | 1 cut(s) | 576 |
| BmgT120I | GGNCC | 4 cut(s) | 367, 368, 377, 576 |
| BmiI | GGNNCC | 4 cut(s) | 369, 577, 717, 785 |
| BmrFI | CCNGG | 1 cut(s) | 1022 |
| BmrI | ACTGGG | 1 cut(s) | 607 |
| BmsI | GCATC | 4 cut(s) | 37, 616, 659, 1258 |
| BmuI | ACTGGG | 1 cut(s) | 607 |
| BpiI | GAAGAC | 4 cut(s) | 1103, 1441, 1611, 1727 |
| BpmI | CTGGAG | 3 cut(s) | 546, 1004, 1550 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 603 |
| Bpu14I | TTCGAA | 1 cut(s) | 1327 |
| BpuEI | CTTGAG | 1 cut(s) | 946 |
| Bsa29I | ATCGAT | 1 cut(s) | 1478 |
| BsaHI | GRCGYC | 1 cut(s) | 784 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 353, 645, 1275 |
| BsaWI | WCCGGW | 1 cut(s) | 158 |
| Bse1I | ACTGG | 6 cut(s) | 563, 602, 837, 1014, 1310, 1656 |
| Bse3DI | GCAATG | 3 cut(s) | 183, 914, 1724 |
| BseAI | TCCGGA | 1 cut(s) | 158 |
| BseBI | CCWGG | 1 cut(s) | 1022 |
| BseCI | ATCGAT | 1 cut(s) | 1478 |
| BseDI | CCNNGG | 4 cut(s) | 189, 353, 645, 1275 |
| BseGI | GGATG | 8 cut(s) | 14, 514, 1209, 1238, 1438, 1576, 1714, 1722 |
| BseMI | GCAATG | 3 cut(s) | 183, 914, 1724 |
| BseMII | CTCAG | 4 cut(s) | 316, 378, 617, 1064 |
| BseNI | ACTGG | 6 cut(s) | 563, 602, 837, 1014, 1310, 1656 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BseSI | GKGCMC | 1 cut(s) | 371 |
| BseYI | CCCAGC | 1 cut(s) | 1199 |
| BsgI | GTGCAG | 3 cut(s) | 645, 1244, 1275 |
| Bsh1236I | CGCG | 1 cut(s) | 237 |
| BshFI | GGCC | 4 cut(s) | 155, 369, 378, 1242 |
| BshNI | GGYRCC | 1 cut(s) | 783 |
| BshVI | ATCGAT | 1 cut(s) | 1478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 303 |
| BsiSI | CCGG | 1 cut(s) | 159 |
| BslFI | GGGAC | 1 cut(s) | 589 |
| BsmAI | GTCTC | 4 cut(s) | 73, 1338, 1624, 1664 |
| BsmFI | GGGAC | 1 cut(s) | 589 |
| BsnI | GGCC | 4 cut(s) | 155, 369, 378, 1242 |
| Bsp119I | TTCGAA | 1 cut(s) | 1327 |
| Bsp120I | GGGCCC | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 3 cut(s) | 303, 371, 604 |
| Bsp13I | TCCGGA | 1 cut(s) | 158 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 603 |
| Bsp19I | CCATGG | 3 cut(s) | 189, 353, 645 |
| BspACI | CCGC | 5 cut(s) | 125, 235, 462, 488, 1111 |
| BspANI | GGCC | 4 cut(s) | 155, 369, 378, 1242 |
| BspCNI | CTCAG | 4 cut(s) | 315, 379, 616, 1063 |
| BspDI | ATCGAT | 1 cut(s) | 1478 |
| BspEI | TCCGGA | 1 cut(s) | 158 |
| BspFNI | CGCG | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 1626 |
| BspLI | GGNNCC | 4 cut(s) | 369, 577, 717, 785 |
| BspMAI | CTGCAG | 2 cut(s) | 747, 1078 |
| BspMI | ACCTGC | 1 cut(s) | 1669 |
| BspPI | GGATC | 4 cut(s) | 681, 905, 1035, 1577 |
| BspQI | GCTCTTC | 1 cut(s) | 802 |
| BspT104I | TTCGAA | 1 cut(s) | 1327 |
| BspT107I | GGYRCC | 1 cut(s) | 783 |
| BsrDI | GCAATG | 3 cut(s) | 183, 914, 1724 |
| BsrI | ACTGG | 6 cut(s) | 563, 602, 837, 1014, 1310, 1656 |
| BssECI | CCNNGG | 4 cut(s) | 189, 353, 645, 1275 |
| BssNI | GRCGYC | 1 cut(s) | 784 |
| BssSI | CACGAG | 1 cut(s) | 1220 |
| BssT1I | CCWWGG | 4 cut(s) | 189, 353, 645, 1275 |
| Bst2BI | CACGAG | 1 cut(s) | 1220 |
| Bst2UI | CCWGG | 1 cut(s) | 1022 |
| Bst4CI | ACNGT | 1 cut(s) | 764 |
| Bst6I | CTCTTC | 6 cut(s) | 76, 82, 126, 432, 802, 1478 |
| BstACI | GRCGYC | 1 cut(s) | 784 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 458, 1840 |
| BstBI | TTCGAA | 1 cut(s) | 1327 |
| BstC8I | GCNNGC | 3 cut(s) | 720, 882, 1491 |
| BstDEI | CTNAG | 5 cut(s) | 302, 387, 603, 629, 1050 |
| BstDSI | CCRYGG | 3 cut(s) | 189, 353, 645 |
| BstF5I | GGATG | 8 cut(s) | 14, 514, 1209, 1238, 1438, 1576, 1714, 1722 |
| BstFNI | CGCG | 1 cut(s) | 237 |
| BstH2I | RGCGCY | 1 cut(s) | 787 |
| BstHHI | GCGC | 2 cut(s) | 239, 786 |
| BstMAI | GTCTC | 4 cut(s) | 73, 1338, 1624, 1664 |
| BstNI | CCWGG | 1 cut(s) | 1022 |
| BstSCI | CCNGG | 1 cut(s) | 1020 |
| BstSFI | CTRYAG | 2 cut(s) | 743, 1074 |
| BstSLI | GKGCMC | 1 cut(s) | 371 |
| BstUI | CGCG | 1 cut(s) | 237 |
| BstV2I | GAAGAC | 4 cut(s) | 1103, 1441, 1611, 1727 |
| BstX2I | RGATCY | 3 cut(s) | 1027, 1216, 1582 |
| BstYI | RGATCY | 3 cut(s) | 1027, 1216, 1582 |
| Bsu15I | ATCGAT | 1 cut(s) | 1478 |
| BsuI | GTATCC | 1 cut(s) | 231 |
| BsuRI | GGCC | 4 cut(s) | 155, 369, 378, 1242 |
| BsuTUI | ATCGAT | 1 cut(s) | 1478 |
| BtgI | CCRYGG | 3 cut(s) | 189, 353, 645 |
| BtgZI | GCGATG | 1 cut(s) | 60 |
| BtsCI | GGATG | 8 cut(s) | 14, 514, 1209, 1238, 1438, 1576, 1714, 1722 |
| BtsIMutI | CAGTG | 4 cut(s) | 384, 662, 844, 1303 |
| BveI | ACCTGC | 1 cut(s) | 1669 |
| Cac8I | GCNNGC | 3 cut(s) | 720, 882, 1491 |
| CaiI | CAGNNNCTG | 3 cut(s) | 458, 610, 1586 |
| CciI | TCATGA | 1 cut(s) | 1626 |
| CfoI | GCGC | 2 cut(s) | 239, 786 |
| Cfr13I | GGNCC | 4 cut(s) | 367, 368, 377, 576 |
| ClaI | ATCGAT | 1 cut(s) | 1478 |
| CseI | GACGC | 1 cut(s) | 1598 |
| Csp6I | GTAC | 2 cut(s) | 40, 1649 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 492, 527 |
| CviAII | CATG | 7 cut(s) | 190, 354, 646, 1129, 1375, 1627, 1785 |
| CviQI | GTAC | 2 cut(s) | 40, 1649 |
| DdeI | CTNAG | 5 cut(s) | 302, 387, 603, 629, 1050 |
| DinI | GGCGCC | 1 cut(s) | 785 |
| DraIII | CACNNNGTG | 1 cut(s) | 1378 |
| Eam1104I | CTCTTC | 6 cut(s) | 76, 82, 126, 432, 802, 1478 |
| EarI | CTCTTC | 6 cut(s) | 76, 82, 126, 432, 802, 1478 |
| Ecl136II | GAGCTC | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 4 cut(s) | 189, 353, 645, 1275 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 3 cut(s) | 303, 371, 604 |
| Eco47I | GGWCC | 1 cut(s) | 576 |
| Eco53kI | GAGCTC | 1 cut(s) | 301 |
| Eco57I | CTGAAG | 6 cut(s) | 486, 515, 726, 987, 1623, 1823 |
| EcoICRI | GAGCTC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 1 cut(s) | 1020 |
| EcoT14I | CCWWGG | 4 cut(s) | 189, 353, 645, 1275 |
| EcoT38I | GRGCYC | 3 cut(s) | 303, 371, 604 |
| EgeI | GGCGCC | 1 cut(s) | 785 |
| EheI | GGCGCC | 1 cut(s) | 785 |
| ErhI | CCWWGG | 4 cut(s) | 189, 353, 645, 1275 |
| FaeI | CATG | 7 cut(s) | 193, 357, 649, 1132, 1378, 1630, 1788 |
| FaqI | GGGAC | 1 cut(s) | 589 |
| FatI | CATG | 7 cut(s) | 189, 353, 645, 1128, 1374, 1626, 1784 |
| FauI | CCCGC | 1 cut(s) | 1104 |
| FbaI | TGATCA | 3 cut(s) | 1090, 1342, 1683 |
| FblI | GTMKAC | 1 cut(s) | 900 |
| FokI | GGATG | 7 cut(s) | 521, 1216, 1245, 1425, 1583, 1721, 1729 |
| FriOI | GRGCYC | 3 cut(s) | 303, 371, 604 |
| FspBI | CTAG | 3 cut(s) | 216, 948, 1521 |
| GlaI | GCGC | 2 cut(s) | 238, 785 |
| GsaI | CCCAGC | 1 cut(s) | 1203 |
| GsuI | CTGGAG | 3 cut(s) | 546, 1004, 1550 |
| HaeII | RGCGCY | 1 cut(s) | 787 |
| HaeIII | GGCC | 4 cut(s) | 155, 369, 378, 1242 |
| HapII | CCGG | 1 cut(s) | 159 |
| HgaI | GACGC | 1 cut(s) | 1598 |
| HhaI | GCGC | 2 cut(s) | 239, 786 |
| Hin1I | GRCGYC | 1 cut(s) | 784 |
| Hin1II | CATG | 7 cut(s) | 193, 357, 649, 1132, 1378, 1630, 1788 |
| Hin6I | GCGC | 2 cut(s) | 237, 784 |
| HinP1I | GCGC | 2 cut(s) | 237, 784 |
| HinfI | GANTC | 8 cut(s) | 332, 641, 701, 1207, 1507, 1545, 1555, 1781 |
| HpaII | CCGG | 1 cut(s) | 159 |
| HphI | GGTGA | 2 cut(s) | 100, 1693 |
| Hpy166II | GTNNAC | 4 cut(s) | 901, 1117, 1364, 1429 |
| Hpy188III | TCNNGA | 6 cut(s) | 159, 611, 948, 1214, 1586, 1627 |
| Hpy8I | GTNNAC | 4 cut(s) | 901, 1117, 1364, 1429 |
| HpyAV | CCTTC | 8 cut(s) | 145, 321, 490, 793, 980, 1223, 1575, 1639 |
| HpyCH4III | ACNGT | 1 cut(s) | 764 |
| HpyCH4IV | ACGT | 1 cut(s) | 897 |
| HpyF3I | CTNAG | 5 cut(s) | 302, 387, 603, 629, 1050 |
| HpySE526I | ACGT | 1 cut(s) | 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 784 |
| Hsp92II | CATG | 7 cut(s) | 193, 357, 649, 1132, 1378, 1630, 1788 |
| HspAI | GCGC | 2 cut(s) | 237, 784 |
| KasI | GGCGCC | 1 cut(s) | 783 |
| Kpn2I | TCCGGA | 1 cut(s) | 158 |
| Ksp22I | TGATCA | 3 cut(s) | 1090, 1342, 1683 |
| LguI | GCTCTTC | 1 cut(s) | 802 |
| LmnI | GCTCC | 9 cut(s) | 161, 298, 715, 748, 1023, 1196, 1522, 1531, 1741 |
| LweI | GCATC | 4 cut(s) | 37, 616, 659, 1258 |
| MaeI | CTAG | 3 cut(s) | 216, 948, 1521 |
| MaeII | ACGT | 1 cut(s) | 897 |
| MaeIII | GTNAC | 2 cut(s) | 472, 920 |
| MfeI | CAATTG | 1 cut(s) | 1176 |
| MflI | RGATCY | 3 cut(s) | 1027, 1216, 1582 |
| MhlI | GDGCHC | 3 cut(s) | 303, 371, 604 |
| Mly113I | GGCGCC | 1 cut(s) | 784 |
| MlyI | GAGTC | 3 cut(s) | 710, 1501, 1790 |
| MmeI | TCCRAC | 1 cut(s) | 783 |
| MroI | TCCGGA | 1 cut(s) | 158 |
| MroXI | GAANNNNTTC | 2 cut(s) | 423, 1622 |
| MseI | TTAA | 7 cut(s) | 89, 324, 1103, 1149, 1284, 1314, 1560 |
| MslI | CAYNNNNRTG | 4 cut(s) | 63, 188, 1039, 1443 |
| MspA1I | CMGCKG | 3 cut(s) | 455, 464, 1601 |
| MspI | CCGG | 1 cut(s) | 159 |
| MspR9I | CCNGG | 1 cut(s) | 1022 |
| MunI | CAATTG | 1 cut(s) | 1176 |
| MvaI | CCWGG | 1 cut(s) | 1022 |
| MvnI | CGCG | 1 cut(s) | 237 |
| NarI | GGCGCC | 1 cut(s) | 784 |
| NcoI | CCATGG | 3 cut(s) | 189, 353, 645 |
| NlaIII | CATG | 7 cut(s) | 193, 357, 649, 1132, 1378, 1630, 1788 |
| NlaIV | GGNNCC | 4 cut(s) | 369, 577, 717, 785 |
| NspV | TTCGAA | 1 cut(s) | 1327 |
| PagI | TCATGA | 1 cut(s) | 1626 |
| PaqCI | CACCTGC | 1 cut(s) | 1669 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PciSI | GCTCTTC | 1 cut(s) | 802 |
| PdmI | GAANNNNTTC | 2 cut(s) | 423, 1622 |
| PfeI | GAWTC | 5 cut(s) | 332, 641, 1207, 1545, 1555 |
| PfoI | TCCNGGA | 1 cut(s) | 1020 |
| PleI | GAGTC | 3 cut(s) | 709, 1501, 1789 |
| PluTI | GGCGCC | 1 cut(s) | 787 |
| PpsI | GAGTC | 3 cut(s) | 709, 1501, 1789 |
| Psp124BI | GAGCTC | 1 cut(s) | 303 |
| Psp6I | CCWGG | 1 cut(s) | 1020 |
| PspFI | CCCAGC | 1 cut(s) | 1199 |
| PspGI | CCWGG | 1 cut(s) | 1020 |
| PspN4I | GGNNCC | 4 cut(s) | 369, 577, 717, 785 |
| PspOMI | GGGCCC | 1 cut(s) | 367 |
| PspPI | GGNCC | 4 cut(s) | 367, 368, 377, 576 |
| PstI | CTGCAG | 2 cut(s) | 747, 1078 |
| PstNI | CAGNNNCTG | 3 cut(s) | 458, 610, 1586 |
| PsuI | RGATCY | 3 cut(s) | 1027, 1216, 1582 |
| PvuII | CAGCTG | 2 cut(s) | 455, 1601 |
| RsaI | GTAC | 2 cut(s) | 41, 1650 |
| RsaNI | GTAC | 2 cut(s) | 40, 1649 |
| RseI | CAYNNNNRTG | 4 cut(s) | 63, 188, 1039, 1443 |
| SacI | GAGCTC | 1 cut(s) | 303 |
| SapI | GCTCTTC | 1 cut(s) | 802 |
| SaqAI | TTAA | 7 cut(s) | 89, 324, 1103, 1149, 1284, 1314, 1560 |
| Sau96I | GGNCC | 4 cut(s) | 367, 368, 377, 576 |
| SchI | GAGTC | 3 cut(s) | 710, 1501, 1790 |
| ScrFI | CCNGG | 1 cut(s) | 1022 |
| SduI | GDGCHC | 3 cut(s) | 303, 371, 604 |
| SfaNI | GCATC | 4 cut(s) | 37, 616, 659, 1258 |
| SfcI | CTRYAG | 2 cut(s) | 743, 1074 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 375 |
| SfoI | GGCGCC | 1 cut(s) | 785 |
| SfuI | TTCGAA | 1 cut(s) | 1327 |
| SinI | GGWCC | 1 cut(s) | 576 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 63, 188, 1039, 1443 |
| SmlI | CTYRAG | 1 cut(s) | 925 |
| SmoI | CTYRAG | 1 cut(s) | 925 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SsiI | CCGC | 5 cut(s) | 125, 235, 462, 488, 1111 |
| SspDI | GGCGCC | 1 cut(s) | 783 |
| SspMI | CTAG | 3 cut(s) | 216, 948, 1521 |
| SstI | GAGCTC | 1 cut(s) | 303 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| StyD4I | CCNGG | 1 cut(s) | 1020 |
| StyI | CCWWGG | 4 cut(s) | 189, 353, 645, 1275 |
| TaaI | ACNGT | 1 cut(s) | 764 |
| TaiI | ACGT | 1 cut(s) | 900 |
| TaqI | TCGA | 3 cut(s) | 349, 1327, 1478 |
| TauI | GCSGC | 2 cut(s) | 464, 491 |
| TfiI | GAWTC | 5 cut(s) | 332, 641, 1207, 1545, 1555 |
| Tru1I | TTAA | 7 cut(s) | 89, 324, 1103, 1149, 1284, 1314, 1560 |
| Tru9I | TTAA | 7 cut(s) | 89, 324, 1103, 1149, 1284, 1314, 1560 |
| TscAI | CASTG | 4 cut(s) | 391, 669, 844, 1310 |
| TspGWI | ACGGA | 2 cut(s) | 838, 1446 |
| TspRI | CASTG | 4 cut(s) | 391, 669, 844, 1310 |
| VpaK11BI | GGWCC | 1 cut(s) | 576 |
| XapI | RAATTY | 2 cut(s) | 731, 1262 |
| XbaI | TCTAGA | 1 cut(s) | 947 |
| XmiI | GTMKAC | 1 cut(s) | 900 |
| XmnI | GAANNNNTTC | 2 cut(s) | 423, 1622 |
| XspI | CTAG | 3 cut(s) | 216, 948, 1521 |