Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007941

Physical Location & Seq

Genomic Coordinates Forward (+)

11478489 .. 11480653

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGGCCAGAGCTCCGTCGTCAATCCTAATCTTCCTCCGCCACAACCACCGTGCCTGGCAAAACCCAAATACCCAAATCAGATACCTCACAACCGAAACCAAAGATTCTGACTTTACAGAAATTTCTCAACAGATTTGTAAGATTATTAGAACAAAACCCAGATGGGAGCAGACTCTGCCATCCCATTACCCTTCTTTTAATTTCACTGACCCCCAATTTTTCACCGAGCTTTTGAAGCACCAAACGAATGTGTTTTTCTCGCTTCGGTTTTTCTTCTGGTTGAGCTCTCAGAATGGGTTTTCGCCCAACCCCGTTTCATGTAATGCGCTTTTCACTGCGCTCGTGGAGGCTAAGGCCTGCAATGCTGCAAAATTGCTTCTTGGACATACCGGTTTTAGCCCTGAACCTGCTTCATTAGAAAGTTATATTGGGTGTCTTTGCGAGGGTGGATATGTTCAGGAGGCGGTTGATGTGTTTTATAGGTTGAAAGGGGCTGGAGTGTGCCTGTCTATAATGACTTGGAATGCGGCTTTGTCAGGTTGCCTTAAAGTGGGGAGGACTGATATTATTTGGATATTGTATCAAGAAATGATAGAATGTGGTGTTGTAGCTGATGTTGAGACTGTTGGGTATCTCATTCAAGCATTTTGTGTTGATAACAATGTTTCGAAAGGATATGAGCTTCTTCGGCAGGTTTTGGTAGATGGACTAGTCCCTGGAAATGCTGCTTTCAATAAATTGATTTCTGGGTTTTGTAAGGAGAAGAATTATACTCGAGTGTCTGAACTCCTCCACATCATGATTTCAAAGAACTGTGACCCAGACAATCATACGTATCAGGAGGTAATCAATTGGCTGTGTAAGAAAGGAAAGGGGCGTGAGGGTTTACGGGTTTTCAATGATCTTAAGGATAGAGGCTATGCCCCAGATACTGTCATGTATACTACCATGATTCATGGTCTTTGCAAAATGGATTATGTTGGGGAAGCTAGGAAGCTGTGGTTTGAGATGATTGAGAAGGGATATCGTCCAAATGAAGGCGAAGATCGATCTATTGTGGCAAATTTATACAAGGAGATGTGTGATAGAGGTTATAAAGAAACCACTGTCAGTTACAACGCAATGATGAGAGGACTATGTTTACATGGAAGGACCGATGAGGCATATGGATTATTCACTGAAATGCCCCATAAGGGTATTGTTCGTGATTTGATTACATACAACACTCTAATCCAAGGTTTCTGTAAGGAAGGCAAGATAGTAGAAAGTACGAACTTATTCCGAGAGCTCCTGACTCAAGGCTTACAACCATCAACTTACTCCTACACCCCACTTATTGAAAAGCTTTGTCAGGTTGGAGCTGTACAAGAAGCAAAAAGTTTGTGGAATGATATGAAGAATAGAGGTTTGGAACCAACTTTCGGCACTCAAAATTATATCATCATTGGATTGTGTGATCAAGGAGATGCTGCAGAGGGAATGGAATGGTTCTTAGACATGTTAAAGAGTAAGCTTAAACCAAAGCGGAAAACTTTTGGGAAACTAGTTGAATGTCTTTCACAAAGAGACAGGTTGGATGATTCTTTACTTGTTTTAGACTTTATGTTTAGGGCAGGTTATACACTGGAAGAACACATATGTTATTCTCTGGTCAATAAGCTTGGCGGGGAGAACAACCATTTCGTTGAAACATGTCTAGGGGAGATCTTAGAAGAAAATTGTGGGATACTGGGGATTCCCAAACAGCAGATTAGGGATGAATTGGGGAAAGGGTACGACATTGTTTTGAAAGTTGACATCCAGGGTGCTCAGACTCTGAGGAAGATTCTTGGGAATTCGGCCGTTTTCATAAATTTGATGACGGAGAGTGAGGCCAAGCTTGTGGAGAGGCTGATTGAGCGGAAAACTAGGAGGAAATTATTGATTGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

645

Amino Acids

73.2

Weight (kDa)

6.86

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 217	1e-07	PPR repeat family
PPR_2	PF13041	240 - 288	1.2e-10	PPR repeat family
PPR_2	PF13041	282 - 323	1.2e-11	PPR repeat family
PPR_1	PF12854	305 - 337	1.7e-08	PPR repeat
PPR_2	PF13041	309 - 346	6.9e-09	PPR repeat family
PPR	PF01535	312 - 341	1.5e-07	PPR repeat
PPR_1	PF12854	364 - 395	7.3e-08	PPR repeat
PPR_2	PF13041	368 - 407	2.7e-09	PPR repeat family
PPR	PF01535	370 - 400	4.2e-08	PPR repeat
PPR_1	PF12854	398 - 429	3.6e-10	PPR repeat
PPR_2	PF13041	403 - 451	3.5e-12	PPR repeat family
PPR	PF01535	405 - 434	3.2e-06	PPR repeat
PPR_3	PF13812	426 - 481	3.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	437 - 486	2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18950
fragaria_vesca	FvH4_4g14110 FvH4_4g14110
malus_domestica	MD02G1277500.v1.1
prunus_persica	Prupe.1G570100_v2.0.a1 Prupe.3G113000_v2.0.a1 Prupe.3G113000_v2.0.a1
pyrus_communis	pycom12g09540
rosa_chinensis	RchiOBHm_Chr4g0419111 RchiOBHm_Chr4g0419121
rosa_laevigata	RLG00000007826
rosa_multiflora	Rmu_sc0000913.1_g000015 Rmu_sc0011831.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362180
rosa_rugosa	Rorug04G0157100
rosa_samantha	Rh4AG218700 Rh4AG218800 Rh4BG220200 Rh4BG220300 Rh4CG230900 Rh4CG231000 Rh4DG217700 Rh4DG217800
rosa_wichuraiana	Rw4G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1095
Acc36I	ACCTGC	3 cut(s)	415, 682, 1604
AccBSI	CCGCTC	1 cut(s)	1900
AccI	GTMKAC	1 cut(s)	941
AciI	CCGC	6 cut(s)	37, 464, 527, 1525, 1665, 1900
AcoI	YGGCCR	2 cut(s)	3, 1839
AcsI	RAATTY	4 cut(s)	120, 1063, 1834, 1852
AfaI	GTAC	3 cut(s)	1270, 1365, 1775
AfiI	CCNNNNNNNGG	4 cut(s)	550, 1037, 1193, 1421
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	2 cut(s)	1497, 1691
AgeI	ACCGGT	1 cut(s)	389
AhlI	ACTAGT	2 cut(s)	709, 1543
AjnI	CCWGG	3 cut(s)	53, 715, 1800
AjuI	GAANNNNNNNTTGG	4 cut(s)	411, 443, 1391, 1423
Alw21I	GWGCWC	4 cut(s)	13, 287, 1290, 1810
Alw26I	GTCTC	2 cut(s)	614, 1560
AlwNI	CAGNNNCTG	3 cut(s)	175, 932, 1816
Ama87I	CYCGRG	1 cut(s)	774
AoxI	GGCC	4 cut(s)	3, 354, 1839, 1872
ApeKI	GCWGC	3 cut(s)	365, 725, 1469
ApoI	RAATTY	4 cut(s)	120, 1063, 1834, 1852
AsiGI	ACCGGT	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	1277
AspLEI	GCGC	2 cut(s)	328, 340
AspS9I	GGNCC	1 cut(s)	1152
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	774
AvaII	GGWCC	1 cut(s)	1152
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	13, 287, 1290
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	4 cut(s)	13, 287, 1290, 1810
BbvI	GCAGC	3 cut(s)	352, 712, 1456
BccI	CCATC	4 cut(s)	156, 187, 698, 1318
BceAI	ACGGC	1 cut(s)	1826
BciT130I	CCWGG	3 cut(s)	55, 717, 1802
BciVI	GTATCC	1 cut(s)	1719
BclI	TGATCA	1 cut(s)	1456
BcoDI	GTCTC	2 cut(s)	614, 1560
BcuI	ACTAGT	2 cut(s)	709, 1543
BfaI	CTAG	5 cut(s)	710, 990, 1544, 1697, 1908
BfmI	CTRYAG	1 cut(s)	1470
BfrI	CTTAAG	1 cut(s)	905
BfuAI	ACCTGC	3 cut(s)	415, 682, 1604
BfuI	GTATCC	1 cut(s)	1719
BglII	AGATCT	1 cut(s)	1704
BisI	GCNGC	4 cut(s)	366, 528, 726, 1470
BlsI	GCNGC	4 cut(s)	367, 529, 727, 1471
Bme1390I	CCNGG	3 cut(s)	55, 717, 1802
Bme18I	GGWCC	1 cut(s)	1152
BmeT110I	CYCGRG	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	1152
BmiI	GGNNCC	1 cut(s)	1413
BmrFI	CCNGG	3 cut(s)	55, 717, 1802
BmrI	ACTGGG	1 cut(s)	1739
BmsI	GCATC	1 cut(s)	1456
BmuI	ACTGGG	1 cut(s)	1739
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	1281
Bsa29I	ATCGAT	1 cut(s)	1048
BsaAI	YACGTR	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	715, 1234, 1801
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	4 cut(s)	550, 1037, 1193, 1421
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	1629, 1734
Bse3DI	GCAATG	2 cut(s)	367, 1128
BseBI	CCWGG	3 cut(s)	55, 717, 1802
BseCI	ATCGAT	1 cut(s)	1048
BseDI	CCNNGG	3 cut(s)	715, 1234, 1801
BseGI	GGATG	4 cut(s)	179, 1582, 1762, 1797
BseLI	CCNNNNNNNGG	4 cut(s)	550, 1037, 1193, 1421
BseMI	GCAATG	2 cut(s)	367, 1128
BseMII	CTCAG	3 cut(s)	302, 1808, 1823
BseNI	ACTGG	2 cut(s)	1629, 1734
BseRI	GAGGAG	1 cut(s)	779
BseX3I	CGGCCG	1 cut(s)	1839
BseXI	GCAGC	3 cut(s)	352, 712, 1456
Bsh1285I	CGRYCG	1 cut(s)	1842
BshFI	GGCC	4 cut(s)	5, 356, 1841, 1874
BshTI	ACCGGT	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	1048
BsiEI	CGRYCG	1 cut(s)	1842
BsiHKAI	GWGCWC	4 cut(s)	13, 287, 1290, 1810
BsiHKCI	CYCGRG	1 cut(s)	774
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	4 cut(s)	550, 1037, 1193, 1421
BsmAI	GTCTC	2 cut(s)	614, 1560
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	5, 356, 1841, 1874
BsoBI	CYCGRG	1 cut(s)	774
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	4 cut(s)	13, 287, 1290, 1810
Bsp1407I	TGTACA	1 cut(s)	1363
Bsp143I	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
BspACI	CCGC	6 cut(s)	37, 464, 527, 1525, 1665, 1900
BspANI	GGCC	4 cut(s)	5, 356, 1841, 1874
BspCNI	CTCAG	3 cut(s)	301, 1809, 1822
BspDI	ATCGAT	1 cut(s)	1048
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	1 cut(s)	1413
BspMAI	CTGCAG	1 cut(s)	1474
BspMI	ACCTGC	3 cut(s)	415, 682, 1604
BspT104I	TTCGAA	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	1900
BsrDI	GCAATG	2 cut(s)	367, 1128
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	1363
BsrI	ACTGG	2 cut(s)	1629, 1734
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	715, 1234, 1801
BssMI	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
BssNAI	GTATAC	1 cut(s)	942
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	1234
Bst1107I	GTATAC	1 cut(s)	942
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	3 cut(s)	55, 717, 1802
Bst4CI	ACNGT	5 cut(s)	50, 625, 815, 934, 1108
BstAFI	CTTAAG	1 cut(s)	905
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	1363
BstBAI	YACGTR	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	6 cut(s)	288, 351, 1492, 1708, 1809, 1817
BstF5I	GGATG	4 cut(s)	179, 1582, 1762, 1797
BstHHI	GCGC	2 cut(s)	328, 340
BstKTI	GATC	5 cut(s)	904, 1048, 1052, 1459, 1707
BstMAI	GTCTC	2 cut(s)	614, 1560
BstMBI	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
BstMCI	CGRYCG	1 cut(s)	1842
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 235, 362, 688, 1897
BstNI	CCWGG	3 cut(s)	55, 717, 1802
BstNSI	RCATGY	2 cut(s)	1501, 1695
BstSCI	CCNGG	3 cut(s)	53, 715, 1800
BstSFI	CTRYAG	1 cut(s)	1470
BstSNI	TACGTA	1 cut(s)	834
BstV1I	GCAGC	3 cut(s)	352, 712, 1456
BstX2I	RGATCY	1 cut(s)	1704
BstXI	CCANNNNNNTGG	1 cut(s)	1882
BstYI	RGATCY	1 cut(s)	1704
BstZ17I	GTATAC	1 cut(s)	942
BstZI	CGGCCG	1 cut(s)	1839
Bsu15I	ATCGAT	1 cut(s)	1048
BsuI	GTATCC	1 cut(s)	1719
BsuRI	GGCC	4 cut(s)	5, 356, 1841, 1874
BsuTUI	ATCGAT	1 cut(s)	1048
BtsCI	GGATG	4 cut(s)	179, 1582, 1762, 1797
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	5 cut(s)	204, 333, 1104, 1176, 1622
BveI	ACCTGC	3 cut(s)	415, 682, 1604
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	3 cut(s)	175, 932, 1816
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	2 cut(s)	328, 340
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	1152
ClaI	ATCGAT	1 cut(s)	1048
Csp6I	GTAC	3 cut(s)	1269, 1364, 1774
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	8 cut(s)	318, 799, 937, 949, 956, 1145, 1498, 1692
CviQI	GTAC	3 cut(s)	1269, 1364, 1774
DdeI	CTNAG	6 cut(s)	288, 351, 1492, 1708, 1809, 1817
DpnI	GATC	5 cut(s)	903, 1047, 1051, 1458, 1706
DpnII	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
EaeI	YGGCCR	2 cut(s)	3, 1839
EagI	CGGCCG	1 cut(s)	1839
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	3 cut(s)	11, 285, 1288
EclXI	CGGCCG	1 cut(s)	1839
Eco105I	TACGTA	1 cut(s)	834
Eco130I	CCWWGG	1 cut(s)	1234
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	3 cut(s)	13, 287, 1290
Eco32I	GATATC	1 cut(s)	1025
Eco47I	GGWCC	1 cut(s)	1152
Eco52I	CGGCCG	1 cut(s)	1839
Eco53kI	GAGCTC	3 cut(s)	11, 285, 1288
Eco88I	CYCGRG	1 cut(s)	774
EcoICRI	GAGCTC	3 cut(s)	11, 285, 1288
EcoRI	GAATTC	1 cut(s)	1834
EcoRII	CCWGG	3 cut(s)	53, 715, 1800
EcoRV	GATATC	1 cut(s)	1025
EcoT14I	CCWWGG	1 cut(s)	1234
EcoT38I	GRGCYC	3 cut(s)	13, 287, 1290
ErhI	CCWWGG	1 cut(s)	1234
FaeI	CATG	8 cut(s)	321, 802, 940, 952, 959, 1148, 1501, 1695
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	8 cut(s)	317, 798, 936, 948, 955, 1144, 1497, 1691
FauI	CCCGC	1 cut(s)	1658
FauNDI	CATATG	2 cut(s)	1165, 1637
FbaI	TGATCA	1 cut(s)	1456
FblI	GTMKAC	1 cut(s)	941
Fnu4HI	GCNGC	4 cut(s)	366, 528, 726, 1470
FokI	GGATG	4 cut(s)	166, 1589, 1769, 1784
FriOI	GRGCYC	3 cut(s)	13, 287, 1290
Fsp4HI	GCNGC	4 cut(s)	366, 528, 726, 1470
FspBI	CTAG	5 cut(s)	710, 990, 1544, 1697, 1908
GlaI	GCGC	2 cut(s)	327, 339
GluI	GCNGC	4 cut(s)	366, 528, 726, 1470
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	4 cut(s)	5, 356, 1841, 1874
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	2 cut(s)	328, 340
Hin1II	CATG	8 cut(s)	321, 802, 940, 952, 959, 1148, 1501, 1695
Hin6I	GCGC	2 cut(s)	326, 338
HinP1I	GCGC	2 cut(s)	326, 338
HincII	GTYRAC	1 cut(s)	1795
HindII	GTYRAC	1 cut(s)	1795
HindIII	AAGCTT	4 cut(s)	1343, 1511, 1658, 1877
HinfI	GANTC	8 cut(s)	104, 172, 952, 1294, 1580, 1735, 1813, 1825
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	4 cut(s)	887, 942, 1142, 1795
Hpy188I	TCNGA	7 cut(s)	80, 109, 291, 784, 1283, 1812, 1818
Hpy188III	TCNNGA	6 cut(s)	458, 584, 799, 839, 1205, 1291
Hpy8I	GTNNAC	4 cut(s)	887, 942, 1142, 1795
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	5 cut(s)	201, 1012, 1031, 1143, 1244
HpyCH4III	ACNGT	5 cut(s)	50, 625, 815, 934, 1108
HpyCH4IV	ACGT	1 cut(s)	833
HpyCH4V	TGCA	4 cut(s)	360, 368, 966, 1472
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 235, 362, 688, 1897
HpyF3I	CTNAG	6 cut(s)	288, 351, 1492, 1708, 1809, 1817
HpySE526I	ACGT	1 cut(s)	833
Hsp92II	CATG	8 cut(s)	321, 802, 940, 952, 959, 1148, 1501, 1695
HspAI	GCGC	2 cut(s)	326, 338
Ksp22I	TGATCA	1 cut(s)	1456
Kzo9I	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
LmnI	GCTCC	5 cut(s)	16, 166, 1293, 1358, 1929
Lsp1109I	GCAGC	3 cut(s)	352, 712, 1456
LweI	GCATC	1 cut(s)	1456
MaeI	CTAG	5 cut(s)	710, 990, 1544, 1697, 1908
MaeII	ACGT	1 cut(s)	833
MaeIII	GTNAC	2 cut(s)	815, 1112
MalI	GATC	5 cut(s)	903, 1047, 1051, 1458, 1706
MbiI	CCGCTC	1 cut(s)	1900
MboI	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
MboII	GAAGA	9 cut(s)	22, 265, 677, 775, 1055, 1408, 1640, 1724, 1834
MfeI	CAATTG	1 cut(s)	850
MflI	RGATCY	1 cut(s)	1704
MhlI	GDGCHC	4 cut(s)	13, 287, 1290, 1810
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	166, 1288, 1807
MmeI	TCCRAC	2 cut(s)	1336, 1554
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	1277
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	198, 546, 906, 1502, 1515
MslI	CAYNNNNRTG	1 cut(s)	1181
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	3 cut(s)	55, 717, 1802
MunI	CAATTG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	3 cut(s)	55, 717, 1802
MwoI	GCNNNNNNNGC	5 cut(s)	175, 235, 362, 688, 1897
NdeI	CATATG	2 cut(s)	1165, 1637
NdeII	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
NlaIII	CATG	8 cut(s)	321, 802, 940, 952, 959, 1148, 1501, 1695
NlaIV	GGNNCC	1 cut(s)	1413
NmuCI	GTSAC	1 cut(s)	815
NspI	RCATGY	2 cut(s)	1501, 1695
NspV	TTCGAA	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	774
PagI	TCATGA	1 cut(s)	798
PceI	AGGCCT	1 cut(s)	356
PciI	ACATGT	2 cut(s)	1497, 1691
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	1277
PfeI	GAWTC	5 cut(s)	104, 952, 1580, 1735, 1825
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	367, 529, 727, 1471
PleI	GAGTC	3 cut(s)	166, 1288, 1807
PpsI	GAGTC	3 cut(s)	166, 1288, 1807
Ppu21I	YACGTR	1 cut(s)	834
PscI	ACATGT	2 cut(s)	1497, 1691
PsiI	TTATAA	1 cut(s)	1095
Psp124BI	GAGCTC	3 cut(s)	13, 287, 1290
Psp6I	CCWGG	3 cut(s)	53, 715, 1800
PspGI	CCWGG	3 cut(s)	53, 715, 1800
PspN4I	GGNNCC	1 cut(s)	1413
PspPI	GGNCC	1 cut(s)	1152
PspXI	VCTCGAGB	1 cut(s)	774
PstI	CTGCAG	1 cut(s)	1474
PstNI	CAGNNNCTG	3 cut(s)	175, 932, 1816
PsuI	RGATCY	1 cut(s)	1704
RsaI	GTAC	3 cut(s)	1270, 1365, 1775
RsaNI	GTAC	3 cut(s)	1269, 1364, 1774
RseI	CAYNNNNRTG	1 cut(s)	1181
SacI	GAGCTC	3 cut(s)	13, 287, 1290
SaqAI	TTAA	5 cut(s)	198, 546, 906, 1502, 1515
SatI	GCNGC	4 cut(s)	366, 528, 726, 1470
Sau3AI	GATC	5 cut(s)	901, 1045, 1049, 1456, 1704
Sau96I	GGNCC	1 cut(s)	1152
SchI	GAGTC	3 cut(s)	166, 1288, 1807
ScrFI	CCNGG	3 cut(s)	55, 717, 1802
SduI	GDGCHC	4 cut(s)	13, 287, 1290, 1810
SfaNI	GCATC	1 cut(s)	1456
SfcI	CTRYAG	1 cut(s)	1470
Sfr274I	CTCGAG	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	1 cut(s)	1152
SlaI	CTCGAG	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	1181
SmlI	CTYRAG	3 cut(s)	774, 905, 1296
SmoI	CTYRAG	3 cut(s)	774, 905, 1296
SnaBI	TACGTA	1 cut(s)	834
SpeI	ACTAGT	2 cut(s)	709, 1543
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	6 cut(s)	37, 464, 527, 1525, 1665, 1900
SspMI	CTAG	5 cut(s)	710, 990, 1544, 1697, 1908
SstI	GAGCTC	3 cut(s)	13, 287, 1290
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	53, 715, 1800
StyI	CCWWGG	1 cut(s)	1234
TaaI	ACNGT	5 cut(s)	50, 625, 815, 934, 1108
TaiI	ACGT	1 cut(s)	836
TaqI	TCGA	3 cut(s)	668, 775, 1048
TaqII	GACCGA	1 cut(s)	1169
TatI	WGTACW	1 cut(s)	1363
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	5 cut(s)	104, 952, 1580, 1735, 1825
Tru1I	TTAA	5 cut(s)	198, 546, 906, 1502, 1515
Tru9I	TTAA	5 cut(s)	198, 546, 906, 1502, 1515
TscAI	CASTG	5 cut(s)	211, 340, 1111, 1183, 1629
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	3 cut(s)	365, 725, 1469
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	7 cut(s)	306, 402, 944, 1050, 1409, 1773, 1837
TspGWI	ACGGA	1 cut(s)	1877
TspRI	CASTG	5 cut(s)	211, 340, 1111, 1183, 1629
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	1 cut(s)	1152
XapI	RAATTY	4 cut(s)	120, 1063, 1834, 1852
XceI	RCATGY	2 cut(s)	1501, 1695
XhoI	CTCGAG	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	1277
XspI	CTAG	5 cut(s)	710, 990, 1544, 1697, 1908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.