Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010678

Physical Location & Seq

Genomic Coordinates Reverse (-)

13173330 .. 13174127

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTGGTTACGCCACAGATGAAACACCCGAGTTCATGCCACTCACTCATGTCCTTGCTACAAAGATTGGCGCCAAGCTTACGGAGGTCAGAAAGAATAAAATAGTCCCATGGTTGAGGCCCGATGGTAAGACCCAAGTGACTGTTGAGTACAAGAATGAGAATGGGGCCATGGTCCCGATTCGGGTGCACACCATCCTTATCTCAACCCAACATGATGAGAATGTCACAAACGAGCAGATTGCTGCTGATTTGAAGGAACATGTGATCGATCCTGTCGTCCCCGCCCAATTCATTGATGACAAAATTATCTACCACTTGAACCCTTCAGGTCGATTCGTCATTGGAGGACCCCATGGAGATGCGGGTCTCACTGGCCGGAAGATAATCATAGACACCTATGGTGGTTGGGGTGCTCATGGTGGCGGTGCTTTCTCTGGAAAGGATCCAACCAAGGTTGACCGGAGTGGTGCATACATTGTAAGGCAGGCAGCAAAAAGTGTTGTGGCATCCGGGCTTGCTCGCCGCTGTATTGTTCAGGTTTCTTATGCTATTGGCGTCCCAGAACCCCTATCGGTTTTCGTGGATACCTACAAAACTGGAAAAATCCCAGACAAGGACATATTGGTTCTCATCAAGGAGAACTTTGACTTTAGGCCGGGAATGATTGCCATCGACCTTGATTTGAAAAGAGGGGGCAACCTCAGGTACCAAAAGACCGCTGCTTATGGTCATTTTGGCCGCGATGATCCAGATTTCACATGGGAGACCGTCAAGATCCTCAAGCCAAAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016765 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046872 GO:0046914 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

266

Amino Acids

29.16

Weight (kDa)

8.77

Isoelectric Point (pI)

15.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_M	PF02772	1 - 113	1.5e-41	S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C	PF02773	115 - 256	2.2e-61	S-adenosylmethionine synthetase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36880 AT2G36880
fragaria_vesca	FvH4_6g16510
malus_domestica	MD04G1091900.v1.1 MD12G1109900.v1.1
prunus_persica	Prupe.7G128500_v2.0.a1
pyrus_communis	pycom04g08660 pycom12g11080
rosa_chinensis	RchiOBHm_Chr3g0470421
rosa_laevigata	RLG00000024269
rosa_multiflora	Rmu_sc0002383.1_g000009 Rmu_sc0020134.1_g000003
rosa_roxburghii	Rroxscaffold_6G00410830
rosa_rugosa	Rorug03G0108600 Rorug03G0108700
rosa_samantha	Rh3AG159100 Rh3BG183600 Rh3CG174100 Rh3DG191200
rosa_wichuraiana	Rw3G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	708
AccB1I	GGYRCC	2 cut(s)	71, 708
AccII	CGCG	1 cut(s)	744
AciI	CCGC	6 cut(s)	285, 365, 426, 526, 720, 742
AclWI	GGATC	5 cut(s)	266, 440, 453, 743, 772
AcoI	YGGCCR	2 cut(s)	376, 739
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	2 cut(s)	72, 558
AfaI	GTAC	2 cut(s)	152, 710
AfiI	CCNNNNNNNGG	2 cut(s)	184, 616
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	256, 322, 688
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw21I	GWGCWC	2 cut(s)	192, 418
Alw26I	GTCTC	2 cut(s)	374, 761
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	5 cut(s)	266, 440, 453, 743, 772
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	5 cut(s)	119, 168, 376, 656, 739
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	245, 491, 722
Asp718I	GGTACC	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	120, 168, 175, 350
AsuC2I	CCSGG	2 cut(s)	514, 660
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	175, 350
AxyI	CCTNAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	71, 708
Bbv12I	GWGCWC	2 cut(s)	192, 418
BbvI	GCAGC	3 cut(s)	232, 503, 709
BccI	CCATC	3 cut(s)	119, 203, 680
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 224, 258
BciVI	GTATCC	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	514, 660
BcoDI	GTCTC	2 cut(s)	374, 761
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	5 cut(s)	246, 492, 526, 723, 742
BlsI	GCNGC	5 cut(s)	247, 493, 527, 724, 743
Bme1390I	CCNGG	2 cut(s)	514, 660
Bme18I	GGWCC	2 cut(s)	175, 350
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	4 cut(s)	120, 168, 175, 350
BmiI	GGNNCC	6 cut(s)	73, 169, 177, 352, 447, 710
BmrFI	CCNGG	2 cut(s)	514, 660
BmsI	GCATC	2 cut(s)	352, 518
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	2 cut(s)	514, 660
Bsa29I	ATCGAT	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	72, 558
BsaI	GGTCTC	2 cut(s)	374, 761
BsaJI	CCNNGG	4 cut(s)	110, 171, 355, 453
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 616
Bse1I	ACTGG	2 cut(s)	379, 604
Bse21I	CCTNAGG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	110, 171, 355, 453
BseGI	GGATG	2 cut(s)	195, 509
BseJI	GATNNNNATC	1 cut(s)	671
BseLI	CCNNNNNNNGG	2 cut(s)	184, 616
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	379, 604
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	232, 503, 709
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	5 cut(s)	121, 170, 378, 658, 741
BshNI	GGYRCC	2 cut(s)	71, 708
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	192, 418
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	379, 463, 513, 659
BslFI	GGGAC	4 cut(s)	92, 161, 266, 545
BslI	CCNNNNNNNGG	2 cut(s)	184, 616
BsmAI	GTCTC	2 cut(s)	374, 761
BsmFI	GGGAC	4 cut(s)	92, 161, 266, 545
BsnI	GGCC	5 cut(s)	121, 170, 378, 658, 741
Bso31I	GGTCTC	2 cut(s)	374, 761
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	192, 418
Bsp143I	GATC	5 cut(s)	267, 271, 445, 748, 777
Bsp19I	CCATGG	3 cut(s)	110, 171, 355
BspACI	CCGC	6 cut(s)	285, 365, 426, 526, 720, 742
BspANI	GGCC	5 cut(s)	121, 170, 378, 658, 741
BspCNI	CTCAG	1 cut(s)	717
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	744
BspLI	GGNNCC	6 cut(s)	73, 169, 177, 352, 447, 710
BspPI	GGATC	5 cut(s)	266, 440, 453, 743, 772
BspT107I	GGYRCC	2 cut(s)	71, 708
BspTNI	GGTCTC	2 cut(s)	374, 761
BsrI	ACTGG	2 cut(s)	379, 604
BssECI	CCNNGG	4 cut(s)	110, 171, 355, 453
BssMI	GATC	5 cut(s)	267, 271, 445, 748, 777
BssNI	GRCGYC	2 cut(s)	72, 558
BssT1I	CCWWGG	4 cut(s)	110, 171, 355, 453
Bst4CI	ACNGT	2 cut(s)	145, 772
BstACI	GRCGYC	2 cut(s)	72, 558
BstC8I	GCNNGC	3 cut(s)	489, 519, 523
BstDEI	CTNAG	1 cut(s)	704
BstDSI	CCRYGG	3 cut(s)	110, 171, 355
BstF5I	GGATG	2 cut(s)	195, 509
BstFNI	CGCG	1 cut(s)	744
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	5 cut(s)	270, 274, 448, 751, 780
BstMAI	GTCTC	2 cut(s)	374, 761
BstMBI	GATC	5 cut(s)	267, 271, 445, 748, 777
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	512, 658
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	232, 503, 709
BstX2I	RGATCY	2 cut(s)	445, 777
BstYI	RGATCY	2 cut(s)	445, 777
Bsu15I	ATCGAT	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	5 cut(s)	121, 170, 378, 658, 741
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	3 cut(s)	110, 171, 355
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	2 cut(s)	195, 509
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	489, 519, 523
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	120, 168, 175, 350
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	151, 709
CviAII	CATG	9 cut(s)	37, 50, 111, 172, 215, 263, 356, 419, 762
CviJI	RGCY	8 cut(s)	79, 121, 170, 378, 517, 658, 741, 787
CviKI_1	RGCY	8 cut(s)	79, 121, 170, 378, 517, 658, 741, 787
CviQI	GTAC	2 cut(s)	151, 709
DdeI	CTNAG	1 cut(s)	704
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	5 cut(s)	269, 273, 447, 750, 779
DpnII	GATC	5 cut(s)	267, 271, 445, 748, 777
EaeI	YGGCCR	2 cut(s)	376, 739
Eco130I	CCWWGG	4 cut(s)	110, 171, 355, 453
Eco31I	GGTCTC	2 cut(s)	374, 761
Eco47I	GGWCC	2 cut(s)	175, 350
Eco57I	CTGAAG	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	350
EcoT14I	CCWWGG	4 cut(s)	110, 171, 355, 453
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	4 cut(s)	110, 171, 355, 453
FaeI	CATG	9 cut(s)	40, 53, 114, 175, 218, 266, 359, 422, 765
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	4 cut(s)	92, 161, 266, 545
FatI	CATG	9 cut(s)	36, 49, 110, 171, 214, 262, 355, 418, 761
FauI	CCCGC	2 cut(s)	292, 358
Fnu4HI	GCNGC	5 cut(s)	246, 492, 526, 723, 742
FokI	GGATG	2 cut(s)	182, 496
Fsp4HI	GCNGC	5 cut(s)	246, 492, 526, 723, 742
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	5 cut(s)	246, 492, 526, 723, 742
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	121, 170, 378, 658, 741
HapII	CCGG	4 cut(s)	379, 463, 513, 659
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	2 cut(s)	72, 558
Hin1II	CATG	9 cut(s)	40, 53, 114, 175, 218, 266, 359, 422, 765
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	181, 336
HpaII	CCGG	4 cut(s)	379, 463, 513, 659
Hpy166II	GTNNAC	2 cut(s)	190, 460
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	4 cut(s)	178, 438, 752, 775
Hpy8I	GTNNAC	2 cut(s)	190, 460
HpyAV	CCTTC	2 cut(s)	250, 336
HpyCH4III	ACNGT	2 cut(s)	145, 772
HpyCH4V	TGCA	2 cut(s)	190, 473
HpyF3I	CTNAG	1 cut(s)	704
Hsp92I	GRCGYC	2 cut(s)	72, 558
Hsp92II	CATG	9 cut(s)	40, 53, 114, 175, 218, 266, 359, 422, 765
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
KpnI	GGTACC	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	267, 271, 445, 748, 777
Lsp1109I	GCAGC	3 cut(s)	232, 503, 709
LweI	GCATC	2 cut(s)	352, 518
MaeIII	GTNAC	3 cut(s)	8, 139, 226
MalI	GATC	5 cut(s)	269, 273, 447, 750, 779
MboI	GATC	5 cut(s)	267, 271, 445, 748, 777
MboII	GAAGA	1 cut(s)	394
MflI	RGATCY	2 cut(s)	445, 777
MhlI	GDGCHC	2 cut(s)	192, 418
MluCI	AATT	2 cut(s)	290, 306
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	6 cut(s)	79, 111, 341, 686, 713, 791
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	528, 722
MspI	CCGG	4 cut(s)	379, 463, 513, 659
MspR9I	CCNGG	2 cut(s)	514, 660
MvnI	CGCG	1 cut(s)	744
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	514, 660
NcoI	CCATGG	3 cut(s)	110, 171, 355
NdeII	GATC	5 cut(s)	267, 271, 445, 748, 777
NlaIII	CATG	9 cut(s)	40, 53, 114, 175, 218, 266, 359, 422, 765
NlaIV	GGNNCC	6 cut(s)	73, 169, 177, 352, 447, 710
NmuCI	GTSAC	2 cut(s)	139, 226
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	181, 336
PkrI	GCNGC	5 cut(s)	247, 493, 527, 724, 743
PluTI	GGCGCC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	350
PscI	ACATGT	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	350
PspN4I	GGNNCC	6 cut(s)	73, 169, 177, 352, 447, 710
PspPI	GGNCC	4 cut(s)	120, 168, 175, 350
PspPPI	RGGWCCY	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	445, 777
RsaI	GTAC	2 cut(s)	152, 710
RsaNI	GTAC	2 cut(s)	151, 709
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	5 cut(s)	246, 492, 526, 723, 742
Sau3AI	GATC	5 cut(s)	267, 271, 445, 748, 777
Sau96I	GGNCC	4 cut(s)	120, 168, 175, 350
ScrFI	CCNGG	2 cut(s)	514, 660
SduI	GDGCHC	2 cut(s)	192, 418
SfaNI	GCATC	2 cut(s)	352, 518
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	2 cut(s)	175, 350
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	2 cut(s)	290, 306
SsiI	CCGC	6 cut(s)	285, 365, 426, 526, 720, 742
SspDI	GGCGCC	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	512, 658
StyI	CCWWGG	4 cut(s)	110, 171, 355, 453
TaaI	ACNGT	2 cut(s)	145, 772
TaqI	TCGA	3 cut(s)	270, 334, 675
TasI	AATT	2 cut(s)	290, 306
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	528, 744
TfiI	GAWTC	2 cut(s)	181, 336
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	139, 226
TseI	GCWGC	3 cut(s)	245, 491, 722
Tsp45I	GTSAC	2 cut(s)	139, 226
TspDTI	ATGAA	3 cut(s)	25, 36, 283
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	175, 350
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.