pycom12g11090

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017132
Physical Location & Seq
Reverse (-)
13177213 .. 13179451
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGGAAGTCCTCGTTTCACGAAGTCGGTCGCTAAAAGGCACCAAAAAAGATGATACCAATGAGAAATTGTTCAGTGTCGAGAATCTCCCTCTATACCAATTCACTCACAGTCGTGTCTCCTTCCTCGCCATTCCCACTACCCTCCCTACTTCTCTGTTATCTTCTCCCTTGCTTTCTCTCGCTCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTCTACCAATGGCTATGGTTACTGCCTCTTCTCACCTCTCTCTGAATCCGTCTTCTCCTCTTGTGCTTCGTGCCTCTCGATTTCTGACCAATGCTCGACCACCTTCCTCCAAATGCTTCCCTGCGCCGATGCCACCAGTAACTTCCGCGTCAGCAAGTAGCAGAAGTAGAAAAACTCCCCCATCTCCATTTGTGATCGACAACGACAAATTCAGTTTAGACATTGTTGAAGATGATGACGCGGCTGACCAAGAACAACAAGTGGGGAATGCCAATGCGAATGAGACCCTTCTCTACTCCTTCAGTCCTTTGCCTCTGCTGCTCCTGGCTGCTCTTCCTGGAGCTGGTACTGTGGCATCTCTGTTCGAGCCTTTCGTTGAGCTTGTCAAATCGTTTGGTCTTCCTGGCTGGCTTGTACATTGGGGTCACCCGGGCAACATGGCTGTTGTGCTTTTTGCTATGGGCGGCTATGGAACATATCTTGGTTACCGGATACGCTTTTCAGATGATGTGGAGGAGAAGGCCAATGCCAAAGACTTGCATCCTAAGCTTCTTGCAGGGATGTTTTTCTTCTTTGCACTTGGAGCAACTGGAGGAGTAACATCGCTTCTCACTTCGGACAAACCTATTTTTGAAAGCCCTCATGCTGTTACAGGGCTCATTGGTCTTAGCCTCTTGACCATACAAACAATTTTACCTGCTTTGTTTGAGGGTAAACCTGAATTAAGAACAGTTCATGGGGTGTTGGGCACTGGGATCATGACATTGTTTGTTGTCCATGCTGCCCTTGGACTTCAACTTGGCCTAAGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

343

Amino Acids

36.58

Weight (kDa)

6.44

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 210 - 342 4.6e-27 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36885 AT2G36885
malus_domestica MD12G1110000.v1.1
prunus_persica Prupe.7G128600_v2.0.a1
pyrus_communis pycom12g11090
rosa_chinensis RchiOBHm_Chr3g0470401
rosa_laevigata RLG00000024270
rosa_multiflora Rmu_sc0002383.1_g000015
rosa_roxburghii Rroxscaffold_6G00410850
rosa_rugosa Rorug03G0108400
rosa_samantha Rh3AG158800 Rh3DG191500
rosa_wichuraiana Rw3G015060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 919
AccB1I GGYRCC 1 cut(s) 38
AccII CGCG 2 cut(s) 362, 455
AciI CCGC 3 cut(s) 360, 455, 678
AclWI GGATC 1 cut(s) 977
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 499
AfaI GTAC 2 cut(s) 562, 630
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 3 cut(s) 443, 848, 1010
AjnI CCWGG 3 cut(s) 537, 550, 616
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 4 cut(s) 557, 595, 763, 1023
AluI AGCT 4 cut(s) 557, 595, 763, 1023
Alw26I GTCTC 2 cut(s) 121, 491
AlwI GGATC 1 cut(s) 977
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 2 cut(s) 735, 1015
ApeKI GCWGC 3 cut(s) 532, 542, 995
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 340
AsuC2I CCSGG 2 cut(s) 644, 645
AsuHPI GGTGA 2 cut(s) 239, 632
AvaI CYCGRG 1 cut(s) 643
BaeGI GKGCMC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 873
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
BbsI GAAGAC 2 cut(s) 258, 605
BbvI GCAGC 3 cut(s) 519, 529, 982
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 3 cut(s) 539, 552, 618
BciVI GTATCC 1 cut(s) 699
BcnI CCSGG 2 cut(s) 644, 645
BcoDI GTCTC 2 cut(s) 121, 491
BfuAI ACCTGC 1 cut(s) 919
BfuI GTATCC 1 cut(s) 699
BisI GCNGC 5 cut(s) 456, 533, 543, 679, 996
BlsI GCNGC 5 cut(s) 457, 534, 544, 680, 997
Bme1390I CCNGG 5 cut(s) 539, 552, 618, 644, 645
BmeT110I CYCGRG 1 cut(s) 643
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 5 cut(s) 539, 552, 618, 644, 645
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 3 cut(s) 333, 578, 763
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 2 cut(s) 258, 605
BpmI CTGGAG 2 cut(s) 573, 825
Bpu10I CCTNAGC 2 cut(s) 759, 1019
BpuMI CCSGG 2 cut(s) 644, 645
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 643, 1000
BsaWI WCCGGW 1 cut(s) 702
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse1I ACTGG 3 cut(s) 350, 808, 970
BseBI CCWGG 3 cut(s) 539, 552, 618
BseDI CCNNGG 2 cut(s) 643, 1000
BseGI GGATG 2 cut(s) 754, 780
BseLI CCNNNNNNNGG 1 cut(s) 557
BseNI ACTGG 3 cut(s) 350, 808, 970
BseRI GAGGAG 3 cut(s) 261, 743, 822
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 3 cut(s) 519, 529, 982
Bsh1236I CGCG 2 cut(s) 362, 455
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 737, 1017
BshNI GGYRCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 2 cut(s) 644, 703
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 121, 491
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 737, 1017
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 873, 965
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 2 cut(s) 408, 969
BspACI CCGC 3 cut(s) 360, 455, 678
BspANI GGCC 2 cut(s) 737, 1017
BspFNI CGCG 2 cut(s) 362, 455
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 919
BspPI GGATC 1 cut(s) 977
BspQI GCTCTTC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 3 cut(s) 350, 808, 970
BssECI CCNNGG 2 cut(s) 643, 1000
BssMI GATC 2 cut(s) 408, 969
BssT1I CCWWGG 1 cut(s) 1000
Bst2UI CCWGG 3 cut(s) 539, 552, 618
Bst4CI ACNGT 3 cut(s) 110, 565, 946
Bst6I CTCTTC 2 cut(s) 247, 552
BstAUI TGTACA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 759, 881, 1019
BstEII GGTNACC 2 cut(s) 638, 698
BstF5I GGATG 2 cut(s) 754, 780
BstFNI CGCG 2 cut(s) 362, 455
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 411, 972
BstMAI GTCTC 2 cut(s) 121, 491
BstMBI GATC 2 cut(s) 408, 969
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 3 cut(s) 532, 760, 797
BstNI CCWGG 3 cut(s) 539, 552, 618
BstPI GGTNACC 2 cut(s) 638, 698
BstSCI CCNGG 5 cut(s) 537, 550, 616, 642, 643
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 2 cut(s) 362, 455
BstV1I GCAGC 3 cut(s) 519, 529, 982
BstV2I GAAGAC 2 cut(s) 258, 605
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 737, 1017
BtgZI GCGATG 1 cut(s) 801
BtsCI GGATG 2 cut(s) 754, 780
BtsIMutI CAGTG 2 cut(s) 79, 963
BveI ACCTGC 1 cut(s) 919
Cac8I GCNNGC 1 cut(s) 623
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 340
Cfr9I CCCGGG 1 cut(s) 643
CseI GACGC 2 cut(s) 351, 461
Csp6I GTAC 2 cut(s) 561, 629
CviAII CATG 5 cut(s) 652, 857, 950, 973, 992
CviQI GTAC 2 cut(s) 561, 629
DdeI CTNAG 3 cut(s) 759, 881, 1019
DpnI GATC 2 cut(s) 410, 971
DpnII GATC 2 cut(s) 408, 969
Eam1104I CTCTTC 2 cut(s) 247, 552
EarI CTCTTC 2 cut(s) 247, 552
Eco130I CCWWGG 1 cut(s) 1000
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 643
Eco91I GGTNACC 2 cut(s) 638, 698
EcoO65I GGTNACC 2 cut(s) 638, 698
EcoRII CCWGG 3 cut(s) 537, 550, 616
EcoT14I CCWWGG 1 cut(s) 1000
EcoT38I GRGCYC 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 1000
FaeI CATG 5 cut(s) 655, 860, 953, 976, 995
FatI CATG 5 cut(s) 651, 856, 949, 972, 991
Fnu4HI GCNGC 5 cut(s) 456, 533, 543, 679, 996
FokI GGATG 2 cut(s) 741, 787
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 5 cut(s) 456, 533, 543, 679, 996
GlaI GCGC 1 cut(s) 339
GluI GCNGC 5 cut(s) 456, 533, 543, 679, 996
GsuI CTGGAG 2 cut(s) 573, 825
HaeIII GGCC 2 cut(s) 737, 1017
HapII CCGG 2 cut(s) 644, 703
HgaI GACGC 2 cut(s) 351, 461
HhaI GCGC 1 cut(s) 340
Hin1II CATG 5 cut(s) 655, 860, 953, 976, 995
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 2 cut(s) 82, 259
HpaII CCGG 2 cut(s) 644, 703
HphI GGTGA 2 cut(s) 239, 632
Hpy166II GTNNAC 1 cut(s) 929
Hpy188I TCNGA 4 cut(s) 258, 300, 718, 832
Hpy188III TCNNGA 5 cut(s) 18, 79, 291, 889, 973
Hpy8I GTNNAC 1 cut(s) 929
HpyAV CCTTC 5 cut(s) 130, 327, 512, 523, 727
HpyCH4III ACNGT 3 cut(s) 110, 565, 946
HpyCH4V TGCA 3 cut(s) 754, 770, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 532, 760, 797
HpyF3I CTNAG 3 cut(s) 759, 881, 1019
Hsp92II CATG 5 cut(s) 655, 860, 953, 976, 995
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 408, 969
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 3 cut(s) 540, 554, 797
Lsp1109I GCAGC 3 cut(s) 519, 529, 982
LweI GCATC 3 cut(s) 333, 578, 763
MaeIII GTNAC 6 cut(s) 232, 352, 638, 698, 811, 862
MalI GATC 2 cut(s) 410, 971
MboI GATC 2 cut(s) 408, 969
MboII GAAGA 7 cut(s) 153, 234, 258, 455, 539, 605, 775
MhlI GDGCHC 2 cut(s) 873, 965
MluCI AATT 5 cut(s) 65, 98, 422, 903, 935
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 938
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 644, 703
MspR9I CCNGG 5 cut(s) 539, 552, 618, 644, 645
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 3 cut(s) 539, 552, 618
MvnI CGCG 2 cut(s) 362, 455
MwoI GCNNNNNNNGC 3 cut(s) 532, 760, 797
NciI CCSGG 2 cut(s) 644, 645
NdeII GATC 2 cut(s) 408, 969
NlaIII CATG 5 cut(s) 655, 860, 953, 976, 995
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 111
PagI TCATGA 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 289, 585
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 82, 259
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 5 cut(s) 457, 534, 544, 680, 997
Psp6I CCWGG 3 cut(s) 537, 550, 616
PspEI GGTNACC 2 cut(s) 638, 698
PspGI CCWGG 3 cut(s) 537, 550, 616
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 2 cut(s) 562, 630
RsaNI GTAC 2 cut(s) 561, 629
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 938
SatI GCNGC 5 cut(s) 456, 533, 543, 679, 996
Sau3AI GATC 2 cut(s) 408, 969
ScrFI CCNGG 5 cut(s) 539, 552, 618, 644, 645
SduI GDGCHC 2 cut(s) 873, 965
SetI ASST 9 cut(s) 252, 319, 559, 597, 765, 841, 913, 934, 1025
SfaNI GCATC 3 cut(s) 333, 578, 763
SmaI CCCGGG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 5 cut(s) 65, 98, 422, 903, 935
SsiI CCGC 3 cut(s) 360, 455, 678
StyD4I CCNGG 5 cut(s) 537, 550, 616, 642, 643
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 3 cut(s) 110, 565, 946
TaqI TCGA 5 cut(s) 78, 292, 310, 411, 579
TaqII GACCGA 1 cut(s) 15
TasI AATT 5 cut(s) 65, 98, 422, 903, 935
TatI WGTACW 1 cut(s) 628
TauI GCSGC 2 cut(s) 458, 681
TfiI GAWTC 2 cut(s) 82, 259
Tru1I TTAA 1 cut(s) 938
Tru9I TTAA 1 cut(s) 938
TscAI CASTG 2 cut(s) 79, 970
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 3 cut(s) 532, 542, 995
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 1 cut(s) 938
TspGWI ACGGA 1 cut(s) 252
TspMI CCCGGG 1 cut(s) 643
TspRI CASTG 2 cut(s) 79, 970
XapI RAATTY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmaI CCCGGG 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.