Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008472

Physical Location & Seq

Genomic Coordinates Forward (+)

13914536 .. 13916918

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACTGCCTCCACTGCTTCCCTCGCTCTTCCTTCTCTCTCCCCCAAAACCCTAGCCCTCTACACTCCCAAACCCGCCTCAATCTATCTCTACTCGGCCGCCTCCTCCGCCCTAGCGCTCGGCTGCAAACCCATTTCAATTTCGGCTTCATTTCTCAACTCCGGGAAGGGGTTTCAGAGCGTGTCGTCTCGGTTCGTACGAAACGTTGCCGTCTCGTCCGAGTTCGAGCAGGACGAGGAGGTTCTCAGCGACGACGGAGAGGCCTCCCCTGACCTCAAACTCTTCGTGGGTAACCTTCCCTTCAGCGTCGATAGCGCTCAGCTCGCTGGTATCTTCGAGAGCGCTGGAAATGTCCAGATGGTCGAGGTGATATATGATAAGACGACCGGAAGAAGCCGGGGATTTGGGTTTGTGACTATGTCAAGTGTTCAAGAAGCTGAATCTGCTGCTCGCCAGCTAAATGGCTATGAACTTGATGGCAGGGCATTGAGGGTAAACTATGGACCTCCTCCTCCTCGGACTGAGGATTCCTCTTTCAGAGGTGCCAGAGGTCCCAGAGGTGGTGGTGGAGGTTATGACTCTAACAACCGCCTTTACGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCTCTTGAGAACTTGTTTAGTGAGCAAGGAAAGGTTTTGGAAGCCAAGGTAGTTTATGACAGGGACAGTGGCAGATCGAGGGGTTTCGGTTTTGTAACTTATGATACTGCTGATGAAATGAACAGTGCCATTGAATCATTGGATGGAGTTGACTTGAATGGAAGATCTATCCGAGTGACTGCGGCAGAACCTAGGCCGAGGCGTCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

281

Amino Acids

29.96

Weight (kDa)

5.04

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	94 - 164	2.7e-19	RNA recognition motif
RRM_1	PF00076	198 - 268	1.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37220 AT3G53460 AT3G53460 AT3G53460 AT3G53460
fragaria_vesca	FvH4_6g16030
malus_domestica	MD04G1096600.v1.1 MD12G1117600.v1.1
prunus_persica	Prupe.6G235900_v2.0.a1
pyrus_communis	pycom12g11630
rosa_chinensis	RchiOBHm_Chr3g0469771
rosa_laevigata	RLG00000004588 RLG00000024322
rosa_multiflora	Rmu_sc0004112.1_g000018 Rmu_sc0010644.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378910 Rroxscaffold_6G00411500
rosa_rugosa	Rorug03G0104300
rosa_samantha	Rh3AG153400 Rh3BG177500 Rh3CG168300 Rh3DG198100
rosa_wichuraiana	Rw3G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AciI	CCGC	5 cut(s)	75, 99, 108, 589, 812
AclI	AACGTT	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	832
AfaI	GTAC	1 cut(s)	198
AfeI	AGCGCT	3 cut(s)	117, 316, 343
AfiI	CCNNNNNNNGG	4 cut(s)	168, 560, 598, 613
AgsI	TTSAA	4 cut(s)	138, 431, 764, 787
AluBI	AGCT	3 cut(s)	322, 437, 457
AluI	AGCT	3 cut(s)	322, 437, 457
Alw26I	GTCTC	2 cut(s)	192, 217
Aor51HI	AGCGCT	3 cut(s)	117, 316, 343
AoxI	GGCC	3 cut(s)	96, 261, 824
ApeKI	GCWGC	2 cut(s)	123, 446
AspA2I	CCTAGG	1 cut(s)	821
AspLEI	GCGC	3 cut(s)	118, 317, 344
AspS9I	GGNCC	2 cut(s)	503, 551
AsuC2I	CCSGG	2 cut(s)	163, 398
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	503, 551
AvrII	CCTAGG	1 cut(s)	821
BanI	GGYRCC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	110, 433
BccI	CCATC	3 cut(s)	352, 470, 767
BceAI	ACGGC	1 cut(s)	194
BcnI	CCSGG	2 cut(s)	163, 398
BcoDI	GTCTC	2 cut(s)	192, 217
BfaI	CTAG	3 cut(s)	53, 113, 822
BfoI	RGCGCY	3 cut(s)	119, 318, 345
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	4 cut(s)	99, 124, 447, 813
BlnI	CCTAGG	1 cut(s)	821
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	4 cut(s)	100, 125, 448, 814
Bme1390I	CCNGG	2 cut(s)	163, 398
Bme18I	GGWCC	2 cut(s)	503, 551
BmgT120I	GGNCC	2 cut(s)	503, 551
BmiI	GGNNCC	2 cut(s)	544, 553
BmrFI	CCNGG	2 cut(s)	163, 398
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	2 cut(s)	163, 398
BsaAI	YACGTR	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	832
BsaJI	CCNNGG	5 cut(s)	397, 515, 675, 821, 827
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 560, 598, 613
BseDI	CCNNGG	5 cut(s)	397, 515, 675, 821, 827
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	4 cut(s)	168, 560, 598, 613
BseMII	CTCAG	3 cut(s)	259, 332, 513
BseRI	GAGGAG	5 cut(s)	94, 251, 498, 501, 504
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	110, 433
Bsh1285I	CGRYCG	2 cut(s)	99, 387
BshFI	GGCC	3 cut(s)	98, 263, 826
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	2 cut(s)	99, 387
BsiSI	CCGG	3 cut(s)	162, 387, 397
BsiWI	CGTACG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	537, 707
BslI	CCNNNNNNNGG	4 cut(s)	168, 560, 598, 613
BsmAI	GTCTC	2 cut(s)	192, 217
BsmBI	CGTCTC	2 cut(s)	192, 217
BsmFI	GGGAC	2 cut(s)	537, 707
BsnI	GGCC	3 cut(s)	98, 263, 826
Bsp143I	GATC	2 cut(s)	704, 794
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	5 cut(s)	75, 99, 108, 589, 812
BspANI	GGCC	3 cut(s)	98, 263, 826
BspCNI	CTCAG	3 cut(s)	258, 331, 514
BspLI	GGNNCC	2 cut(s)	544, 553
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	542
BssECI	CCNNGG	5 cut(s)	397, 515, 675, 821, 827
BssMI	GATC	2 cut(s)	704, 794
BssNI	GRCGYC	1 cut(s)	832
BssT1I	CCWWGG	2 cut(s)	675, 821
Bst4CI	ACNGT	2 cut(s)	698, 755
Bst6I	CTCTTC	2 cut(s)	33, 287
BstACI	GRCGYC	1 cut(s)	832
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	324, 451, 455
BstDEI	CTNAG	3 cut(s)	245, 318, 522
BstEII	GGTNACC	2 cut(s)	290, 602
BstF5I	GGATG	1 cut(s)	778
BstH2I	RGCGCY	3 cut(s)	119, 318, 345
BstHHI	GCGC	3 cut(s)	118, 317, 344
BstKTI	GATC	2 cut(s)	707, 797
BstMAI	GTCTC	2 cut(s)	192, 217
BstMBI	GATC	2 cut(s)	704, 794
BstMCI	CGRYCG	2 cut(s)	99, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 107, 312, 323, 443
BstPI	GGTNACC	2 cut(s)	290, 602
BstSCI	CCNGG	2 cut(s)	161, 396
BstV1I	GCAGC	2 cut(s)	110, 433
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	794
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	98, 263, 826
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 703, 760
Cac8I	GCNNGC	3 cut(s)	324, 451, 455
CfoI	GCGC	3 cut(s)	118, 317, 344
Cfr13I	GGNCC	2 cut(s)	503, 551
CseI	GACGC	2 cut(s)	295, 821
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	612
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	245, 318, 522
DpnI	GATC	2 cut(s)	706, 796
DpnII	GATC	2 cut(s)	704, 794
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	33, 287
EarI	CTCTTC	2 cut(s)	33, 287
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	675, 821
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	503, 551
Eco47III	AGCGCT	3 cut(s)	117, 316, 343
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	286
Eco91I	GGTNACC	2 cut(s)	290, 602
EcoO109I	RGGNCCY	1 cut(s)	551
EcoO65I	GGTNACC	2 cut(s)	290, 602
EcoT14I	CCWWGG	2 cut(s)	675, 821
ErhI	CCWWGG	2 cut(s)	675, 821
Esp3I	CGTCTC	2 cut(s)	192, 217
FaeI	CATG	1 cut(s)	615
FaiI	YATR	9 cut(s)	373, 375, 419, 468, 501, 576, 613, 687, 732
FaqI	GGGAC	2 cut(s)	537, 707
FatI	CATG	1 cut(s)	611
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	99, 124, 447, 813
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	4 cut(s)	99, 124, 447, 813
FspBI	CTAG	3 cut(s)	53, 113, 822
GlaI	GCGC	3 cut(s)	117, 316, 343
GluI	GCNGC	4 cut(s)	99, 124, 447, 813
HaeII	RGCGCY	3 cut(s)	119, 318, 345
HaeIII	GGCC	3 cut(s)	98, 263, 826
HapII	CCGG	3 cut(s)	162, 387, 397
HgaI	GACGC	2 cut(s)	295, 821
HhaI	GCGC	3 cut(s)	118, 317, 344
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	1 cut(s)	615
Hin6I	GCGC	3 cut(s)	116, 315, 342
HinP1I	GCGC	3 cut(s)	116, 315, 342
HincII	GTYRAC	2 cut(s)	622, 781
HindII	GTYRAC	2 cut(s)	622, 781
HinfI	GANTC	4 cut(s)	440, 527, 578, 764
HpaII	CCGG	3 cut(s)	162, 387, 397
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	496, 622, 781
Hpy188I	TCNGA	5 cut(s)	177, 220, 519, 539, 803
Hpy188III	TCNNGA	4 cut(s)	337, 355, 431, 635
Hpy8I	GTNNAC	3 cut(s)	496, 622, 781
Hpy99I	CGWCG	3 cut(s)	254, 257, 311
HpyAV	CCTTC	4 cut(s)	42, 160, 305, 310
HpyCH4III	ACNGT	2 cut(s)	698, 755
HpyCH4IV	ACGT	2 cut(s)	204, 597
HpyCH4V	TGCA	2 cut(s)	126, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 107, 312, 323, 443
HpyF3I	CTNAG	3 cut(s)	245, 318, 522
HpySE526I	ACGT	2 cut(s)	204, 597
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	1 cut(s)	615
HspAI	GCGC	3 cut(s)	116, 315, 342
Kzo9I	GATC	2 cut(s)	704, 794
LguI	GCTCTTC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	110, 433
MaeI	CTAG	3 cut(s)	53, 113, 822
MaeII	ACGT	2 cut(s)	204, 597
MaeIII	GTNAC	5 cut(s)	290, 412, 602, 724, 805
MalI	GATC	2 cut(s)	706, 796
MboI	GATC	2 cut(s)	704, 794
MboII	GAAGA	5 cut(s)	20, 274, 325, 402, 804
MflI	RGATCY	1 cut(s)	794
MluCI	AATT	3 cut(s)	138, 625, 836
MlyI	GAGTC	1 cut(s)	572
MseI	TTAA	1 cut(s)	841
MspI	CCGG	3 cut(s)	162, 387, 397
MspR9I	CCNGG	2 cut(s)	163, 398
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 107, 312, 323, 443
NciI	CCSGG	2 cut(s)	163, 398
NdeII	GATC	2 cut(s)	704, 794
NlaIII	CATG	1 cut(s)	615
NlaIV	GGNNCC	2 cut(s)	544, 553
NmeAIII	GCCGAG	2 cut(s)	74, 99
NmuCI	GTSAC	2 cut(s)	412, 805
PceI	AGGCCT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	196, 201, 231
PfeI	GAWTC	3 cut(s)	440, 527, 764
Pfl23II	CGTACG	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	100, 125, 448, 814
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	1 cut(s)	598
PpuMI	RGGWCCY	1 cut(s)	551
Psp1406I	AACGTT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	551
PspEI	GGTNACC	2 cut(s)	290, 602
PspLI	CGTACG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	544, 553
PspPI	GGNCC	2 cut(s)	503, 551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	841
SatI	GCNGC	4 cut(s)	99, 124, 447, 813
Sau3AI	GATC	2 cut(s)	704, 794
Sau96I	GGNCC	2 cut(s)	503, 551
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	163, 398
SinI	GGWCC	2 cut(s)	503, 551
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	138, 625, 836
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	5 cut(s)	75, 99, 108, 589, 812
SspMI	CTAG	3 cut(s)	53, 113, 822
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	161, 396
StyI	CCWWGG	2 cut(s)	675, 821
TaaI	ACNGT	2 cut(s)	698, 755
TaiI	ACGT	2 cut(s)	207, 600
TaqI	TCGA	5 cut(s)	225, 309, 336, 363, 707
TasI	AATT	3 cut(s)	138, 625, 836
TauI	GCSGC	2 cut(s)	101, 815
TfiI	GAWTC	3 cut(s)	440, 527, 764
Tru1I	TTAA	1 cut(s)	841
Tru9I	TTAA	1 cut(s)	841
TscAI	CASTG	3 cut(s)	19, 703, 760
TseFI	GTSAC	2 cut(s)	412, 805
TseI	GCWGC	2 cut(s)	123, 446
Tsp45I	GTSAC	2 cut(s)	412, 805
TspDTI	ATGAA	4 cut(s)	138, 483, 759, 764
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	3 cut(s)	19, 703, 760
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	503, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmaJI	CCTAGG	1 cut(s)	821
XspI	CTAG	3 cut(s)	53, 113, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.