Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

15384032 .. 15385457

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAAGATGAAAGGCATAGACATATTCTGTGCATCCCAAGCTTCAACAGCCATATGCATGAACATGGATCATCAAGCATCCTCCTCCTCCGTCGTACAACTCGGCGGCCGAGCCCTCGACCGCCACAACCCCATCATCCAAGATGCAAGAAGAAGCACAAGCTCCAGAACCCTTCCCATTGCTCCATGCTCTTCCCAATCCCCCATCAACCCCAAGGCCTACCACCAACTCCCAAAGAGCAAGAAAAAAGCAACCTCCTCATCACTTAGACCAAGTACCAAGAGCTCCTCAAAAGAAAATGATCAGATGAGGAAGAGTACTAGTAATATTTTTCATGGAAAGTTGGATGAAAATGTTAAGAAGTTTTCTTCTGTTCTAAGTGAGAGTGTTGTTAGGAAGAGCTCTGCCAACCCTATCGATCTTATTACTCCTCCTGGCTCCTCCAGATACCTTTTGAGTGATACTGTGATCTTTGATGGGTTATCGGATCACGATCCGGTTTTGGCATTGGTTCCGGTTGGGCAGAAAAAGAATGCAGTGAAAATAATCACAGAAAATAAATCTACTACTTCTTCAATTGGCTCTTCTTCCTCATCTCTGACAAAAGACTCAAAACCACCAACGCCACCACCACTGCCACCGCCTTCCAACCAGGTTGTTGTATTGATGGTGTCCCTTCACTGCAAAGGGTGTGTAGGAAAACTGAGAAAACATCTATCCAGAATGGAAGGGGTGACATCATTCAACATAGACTTTGCAGCAAAGAAGGTGACAGTCACTGGAGATGTAACCCCATCGAGTGTCCTTGCCAGTGTCTCAAAGGTGAAGAACGCTCAGTTTTGGCCTACTGTGTCATCAGCATCACCTGCCTCTCCACCTTGTCCTACCAAACTAGAGGCCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

303

Amino Acids

32.21

Weight (kDa)

9.92

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	222 - 274	2.7e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	874
Acc36I	ACCTGC	1 cut(s)	874
AciI	CCGC	3 cut(s)	105, 121, 641
AclWI	GGATC	3 cut(s)	75, 488, 495
AcoI	YGGCCR	1 cut(s)	106
AfaI	GTAC	3 cut(s)	96, 277, 319
AgsI	TTSAA	3 cut(s)	45, 576, 745
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	433, 651
AluBI	AGCT	4 cut(s)	41, 162, 285, 402
AluI	AGCT	4 cut(s)	41, 162, 285, 402
Alw21I	GWGCWC	2 cut(s)	287, 404
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	3 cut(s)	75, 488, 495
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	4 cut(s)	106, 216, 842, 897
ApeKI	GCWGC	1 cut(s)	758
AsuHPI	GGTGA	4 cut(s)	745, 781, 835, 855
BanII	GRGCYC	3 cut(s)	115, 287, 404
Bbv12I	GWGCWC	2 cut(s)	287, 404
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	5 cut(s)	140, 212, 470, 661, 802
BciT130I	CCWGG	2 cut(s)	435, 653
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	820
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	321, 893
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	2 cut(s)	106, 759
BlsI	GCNGC	2 cut(s)	107, 760
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	435, 653
BmiI	GGNNCC	2 cut(s)	439, 513
BmrFI	CCNGG	2 cut(s)	435, 653
BmsI	GCATC	4 cut(s)	41, 86, 133, 869
BpmI	CTGGAG	3 cut(s)	148, 427, 801
Bsa29I	ATCGAT	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	2 cut(s)	496, 514
Bse1I	ACTGG	2 cut(s)	784, 810
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	435, 653
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	32, 77, 135, 352
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	695, 848
BseNI	ACTGG	2 cut(s)	784, 810
BseRI	GAGGAG	6 cut(s)	73, 76, 247, 277, 420, 430
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	770
Bsh1285I	CGRYCG	2 cut(s)	109, 121
BshFI	GGCC	4 cut(s)	108, 218, 844, 899
BshVI	ATCGAT	1 cut(s)	417
BsiEI	CGRYCG	2 cut(s)	109, 121
BsiHKAI	GWGCWC	2 cut(s)	287, 404
BsiSI	CCGG	2 cut(s)	497, 515
BslFI	GGGAC	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	108, 218, 844, 899
Bsp1286I	GDGCHC	3 cut(s)	115, 287, 404
Bsp143I	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
BspACI	CCGC	3 cut(s)	105, 121, 641
BspANI	GGCC	4 cut(s)	108, 218, 844, 899
BspCNI	CTCAG	2 cut(s)	696, 847
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	439, 513
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	3 cut(s)	75, 488, 495
BspQI	GCTCTTC	3 cut(s)	196, 392, 589
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	784, 810
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	435, 653
Bst4CI	ACNGT	3 cut(s)	466, 775, 850
Bst6I	CTCTTC	4 cut(s)	196, 308, 392, 589
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstDEI	CTNAG	4 cut(s)	266, 377, 704, 834
BstF5I	GGATG	4 cut(s)	32, 77, 135, 352
BstKTI	GATC	6 cut(s)	70, 304, 421, 471, 490, 496
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
BstMCI	CGRYCG	2 cut(s)	109, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 866
BstNI	CCWGG	2 cut(s)	435, 653
BstSCI	CCNGG	2 cut(s)	433, 651
BstV1I	GCAGC	1 cut(s)	770
BstZI	CGGCCG	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	108, 218, 844, 899
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	32, 77, 135, 352
BtsI	GCAGTG	3 cut(s)	543, 632, 679
BtsIMutI	CAGTG	5 cut(s)	543, 632, 679, 777, 817
BveI	ACCTGC	1 cut(s)	874
CaiI	CAGNNNCTG	1 cut(s)	779
ClaI	ATCGAT	1 cut(s)	417
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	3 cut(s)	95, 276, 318
CviAII	CATG	4 cut(s)	58, 64, 186, 335
CviQI	GTAC	3 cut(s)	95, 276, 318
DdeI	CTNAG	4 cut(s)	266, 377, 704, 834
DpnI	GATC	6 cut(s)	69, 303, 420, 470, 489, 495
DpnII	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	4 cut(s)	196, 308, 392, 589
EarI	CTCTTC	4 cut(s)	196, 308, 392, 589
Ecl136II	GAGCTC	2 cut(s)	285, 402
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	3 cut(s)	115, 287, 404
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	285, 402
EcoICRI	GAGCTC	2 cut(s)	285, 402
EcoRII	CCWGG	2 cut(s)	433, 651
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	59
EcoT38I	GRGCYC	3 cut(s)	115, 287, 404
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	61, 67, 189, 338
FaiI	YATR	9 cut(s)	17, 23, 53, 55, 59, 65, 187, 336, 749
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	4 cut(s)	57, 63, 185, 334
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	106, 759
FokI	GGATG	4 cut(s)	19, 64, 122, 359
FriOI	GRGCYC	3 cut(s)	115, 287, 404
Fsp4HI	GCNGC	2 cut(s)	106, 759
FspBI	CTAG	2 cut(s)	321, 893
GluI	GCNGC	2 cut(s)	106, 759
GsuI	CTGGAG	3 cut(s)	148, 427, 801
HaeIII	GGCC	4 cut(s)	108, 218, 844, 899
HapII	CCGG	2 cut(s)	497, 515
Hin1II	CATG	4 cut(s)	61, 67, 189, 338
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	608
HpaII	CCGG	2 cut(s)	497, 515
HphI	GGTGA	4 cut(s)	745, 781, 835, 855
Hpy188I	TCNGA	3 cut(s)	306, 487, 600
Hpy188III	TCNNGA	4 cut(s)	165, 444, 491, 720
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	182, 654, 686, 722, 760
HpyCH4III	ACNGT	3 cut(s)	466, 775, 850
HpyCH4V	TGCA	6 cut(s)	32, 57, 146, 536, 684, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 866
HpyF3I	CTNAG	4 cut(s)	266, 377, 704, 834
Hsp92II	CATG	4 cut(s)	61, 67, 189, 338
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
LguI	GCTCTTC	3 cut(s)	196, 392, 589
LmnI	GCTCC	4 cut(s)	167, 187, 290, 443
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	4 cut(s)	41, 86, 133, 869
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	2 cut(s)	321, 893
MaeIII	GTNAC	4 cut(s)	733, 769, 775, 787
MalI	GATC	6 cut(s)	69, 303, 420, 470, 489, 495
MboI	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	3 cut(s)	115, 287, 404
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	324, 672
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	56, 62
MspI	CCGG	2 cut(s)	497, 515
MspR9I	CCNGG	2 cut(s)	435, 653
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	435, 653
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 866
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
NlaIII	CATG	4 cut(s)	61, 67, 189, 338
NlaIV	GGNNCC	2 cut(s)	439, 513
NmeAIII	GCCGAG	2 cut(s)	81, 134
NmuCI	GTSAC	3 cut(s)	733, 769, 775
NsiI	ATGCAT	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	874
PceI	AGGCCT	1 cut(s)	218
PciSI	GCTCTTC	3 cut(s)	196, 392, 589
PctI	GAATGC	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	107, 760
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Psp124BI	GAGCTC	2 cut(s)	287, 404
Psp6I	CCWGG	2 cut(s)	433, 651
PspGI	CCWGG	2 cut(s)	433, 651
PspN4I	GGNNCC	2 cut(s)	439, 513
PstNI	CAGNNNCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	96, 277, 319
RsaNI	GTAC	3 cut(s)	95, 276, 318
RseI	CAYNNNNRTG	2 cut(s)	56, 62
SacI	GAGCTC	2 cut(s)	287, 404
SapI	GCTCTTC	3 cut(s)	196, 392, 589
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	106, 759
Sau3AI	GATC	6 cut(s)	67, 301, 418, 468, 487, 493
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	2 cut(s)	435, 653
SduI	GDGCHC	3 cut(s)	115, 287, 404
SexAI	ACCWGGT	1 cut(s)	651
SfaNI	GCATC	4 cut(s)	41, 86, 133, 869
SmiMI	CAYNNNNRTG	2 cut(s)	56, 62
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	1 cut(s)	576
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	3 cut(s)	105, 121, 641
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	321, 893
SstI	GAGCTC	2 cut(s)	287, 404
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	433, 651
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	466, 775, 850
TaqI	TCGA	3 cut(s)	117, 417, 797
TasI	AATT	1 cut(s)	576
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	5 cut(s)	543, 639, 686, 784, 817
TseFI	GTSAC	3 cut(s)	733, 769, 775
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	3 cut(s)	733, 769, 775
TspDTI	ATGAA	5 cut(s)	17, 23, 74, 323, 363
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	5 cut(s)	543, 639, 686, 784, 817
XspI	CTAG	2 cut(s)	321, 893
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.