pycom12g15980
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013088
Physical Location & Seq
Forward (+)
18435198 .. 18436263
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGGAGCGTTCAGGAGACGAAGGACTTGCTTCTGATCTCGAAAAAAGATCCGAGCTCGATCAGACTTTTATGGAGACGAAGAGAAACAAGCTTCTGTGGGAAGTGATTTCTACGAGGATGAAGGAAAAAGGTCACCATCGCAGCGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAGACAATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAATGAGCTACAAGCGATTTTCGCTGCACGGATCCAGAGAATGCTGTGGGCAGAAGAAAGCGGAGCTGCAAGCGGGTCGAAGAAGAAAACGCTTTCTTCAGACGATGAGGAAGATAACGAGGATAGCGAGGCAGAGAATAAGGGAAGCACGGCGAGGAACAAAAAGAAAAAGGTGAAGATGAGCAATATCGGAAGCAGCGGTACTAGTGGGAGTGCAAGTGGAAATAATGTGAGGGAGATATTGGAGGGGTTCATGAAGCAACAAATGCAAATGGAAATGCAATGGAGGGAAGAGTTTCAAGCAAGGGAGAACGAGAGGCGGTTAAAGGAGATGGAGTGGAGGCAGAGGATGGAAGCGTTGGAGAACGAGAGGATAATGATGGAGACGAGATGGAGGGAGAGGGAGGAGCAAAGGAGATTGAGGGAGGAGGCTAGAGCCGAGAAGAGGGATGCTCTTATAACTGCTTTGCTAAACAAGCTTAGAAGAGAGGATATGTAG

Protein Analysis

247

Amino Acids

29.18

Weight (kDa)

8.34

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 14 - 87 2.3e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38250
fragaria_vesca FvH4_6g11330 FvH4_6g11330
malus_domestica MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica Prupe.6G278600_v2.0.a1
pyrus_communis pycom04g13960 pycom12g15980
rosa_chinensis RchiOBHm_Chr3g0462911
rosa_laevigata RLG00000024825
rosa_multiflora Rmu_sc0000766.1_g000017
rosa_roxburghii Rroxscaffold_6G00417110
rosa_rugosa Rorug03G0059700
rosa_samantha Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana Rw3G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AciI CCGC 4 cut(s) 303, 315, 441, 562
AclWI GGATC 3 cut(s) 42, 268, 281
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 1 cut(s) 687
AgsI TTSAA 1 cut(s) 542
AhlI ACTAGT 1 cut(s) 446
AluBI AGCT 6 cut(s) 55, 91, 218, 250, 308, 721
AluI AGCT 6 cut(s) 55, 91, 218, 250, 308, 721
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 4 cut(s) 9, 68, 194, 620
AlwI GGATC 3 cut(s) 42, 268, 281
ApeKI GCWGC 5 cut(s) 141, 226, 266, 308, 438
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 125, 427
BamHI GGATCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 427, 459
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 5 cut(s) 153, 238, 253, 295, 450
BccI CCATC 5 cut(s) 144, 568, 586, 616, 627
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 300, 334
BcoDI GTCTC 4 cut(s) 9, 68, 194, 620
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 447, 675
BisI GCNGC 5 cut(s) 142, 227, 267, 309, 439
BlsI GCNGC 5 cut(s) 143, 228, 268, 310, 440
BmiI GGNNCC 2 cut(s) 210, 275
BmsI GCATC 1 cut(s) 682
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BsaXI ACNNNNNCTCC 4 cut(s) 445, 475, 563, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 530
BseGI GGATG 3 cut(s) 123, 597, 697
BseLI CCNNNNNNNGG 1 cut(s) 687
BseMI GCAATG 1 cut(s) 530
BseRI GAGGAG 2 cut(s) 662, 683
BseXI GCAGC 5 cut(s) 153, 238, 253, 295, 450
BsgI GTGCAG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 687
BsmAI GTCTC 4 cut(s) 9, 68, 194, 620
BsmBI CGTCTC 3 cut(s) 9, 68, 620
BsmI GAATGC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 34, 47, 58, 273
BspACI CCGC 4 cut(s) 303, 315, 441, 562
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 2 cut(s) 210, 275
BspPI GGATC 3 cut(s) 42, 268, 281
BsrDI GCAATG 1 cut(s) 530
BssMI GATC 4 cut(s) 34, 47, 58, 273
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 4 cut(s) 74, 528, 680, 721
BstAPI GCANNNNNTGC 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 722
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 3 cut(s) 123, 597, 697
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 4 cut(s) 37, 50, 61, 276
BstMAI GTCTC 4 cut(s) 9, 68, 194, 620
BstMBI GATC 4 cut(s) 34, 47, 58, 273
BstMWI GCNNNNNNNGC 3 cut(s) 263, 508, 718
BstPI GGTNACC 1 cut(s) 131
BstV1I GCAGC 5 cut(s) 153, 238, 253, 295, 450
BstX2I RGATCY 2 cut(s) 47, 273
BstYI RGATCY 2 cut(s) 47, 273
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 3 cut(s) 123, 597, 697
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 1 cut(s) 495
CfoI GCGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 444
CviAII CATG 1 cut(s) 496
CviJI RGCY 9 cut(s) 55, 91, 211, 218, 250, 308, 674, 680, 721
CviKI_1 RGCY 9 cut(s) 55, 91, 211, 218, 250, 308, 674, 680, 721
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 1 cut(s) 722
DpnI GATC 4 cut(s) 36, 49, 60, 275
DpnII GATC 4 cut(s) 34, 47, 58, 273
Eam1104I CTCTTC 4 cut(s) 74, 528, 680, 721
EarI CTCTTC 4 cut(s) 74, 528, 680, 721
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 57
Esp3I CGTCTC 3 cut(s) 9, 68, 620
FaeI CATG 1 cut(s) 499
FaiI YATR 5 cut(s) 71, 221, 497, 701, 737
FatI CATG 1 cut(s) 495
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 5 cut(s) 142, 227, 267, 309, 439
FokI GGATG 3 cut(s) 130, 604, 704
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 5 cut(s) 142, 227, 267, 309, 439
FspBI CTAG 2 cut(s) 447, 675
GlaI GCGC 1 cut(s) 145
GluI GCNGC 5 cut(s) 142, 227, 267, 309, 439
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 499
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 2 cut(s) 89, 719
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 125, 427
Hpy188I TCNGA 5 cut(s) 34, 52, 63, 343, 434
Hpy188III TCNNGA 4 cut(s) 12, 38, 277, 496
HpyAV CCTTC 2 cut(s) 14, 115
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 7 cut(s) 156, 162, 269, 311, 458, 511, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 508, 718
HpyF3I CTNAG 1 cut(s) 722
Hsp92II CATG 1 cut(s) 499
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 34, 47, 58, 273
LmnI GCTCC 4 cut(s) 4, 208, 305, 649
LpnPI CCDG 2 cut(s) 225, 290
Lsp1109I GCAGC 5 cut(s) 153, 238, 253, 295, 450
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 447, 675
MaeIII GTNAC 3 cut(s) 131, 178, 185
MalI GATC 4 cut(s) 36, 49, 60, 275
MboI GATC 4 cut(s) 34, 47, 58, 273
MflI RGATCY 2 cut(s) 47, 273
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 263, 508, 718
NdeII GATC 4 cut(s) 34, 47, 58, 273
NlaIII CATG 1 cut(s) 499
NlaIV GGNNCC 2 cut(s) 210, 275
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 1 cut(s) 131
PagI TCATGA 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 5 cut(s) 143, 228, 268, 310, 440
PsiI TTATAA 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 210, 275
PsuI RGATCY 2 cut(s) 47, 273
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 5 cut(s) 142, 227, 267, 309, 439
Sau3AI GATC 4 cut(s) 34, 47, 58, 273
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 57, 93, 133, 177, 220, 252, 310, 417, 723
SfaNI GCATC 1 cut(s) 682
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 1 cut(s) 230
SsiI CCGC 4 cut(s) 303, 315, 441, 562
SspMI CTAG 2 cut(s) 447, 675
SstI GAGCTC 1 cut(s) 57
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 39, 57, 320
TasI AATT 1 cut(s) 230
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 5 cut(s) 141, 226, 266, 308, 438
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 134, 484, 512
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 447, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.