pycom12g18060

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013238
Physical Location & Seq
Reverse (-)
20339033 .. 20339653
621 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGTCGAGCACCATGACAGAAAATAGCCACCACAACAAACCCAACAAGCGAAAACGCTTATGTCTCATTACCATTGGTGTTATCCTGTTCTTGAACTTCCTACTCTTCCTCATCGCCCTGATTCTTGCCCTAACAGTTTTCAAGTCCAAACAGCCGAAAACTGAAATCCTCTCCGCCTCCGTGGATGGCGTAGCTCCTCGCGTCACCTTCCCCGCTGTCCGGATCGAACTCAACATCACCGTCAACCTCACGATCAACGTCCAGAACCGAAACTACGCAAGCTTCAAGCATGGCGCGGGAAAGACTTTGCTTCTTTACCAAGGTACACAGGTCGGGGATGCGGATTTGTACCCGGGTAACGTTCCGGCGAGGGGCAACGCCACGCTGCCCTGCCTGCTTACTTTGCAGGTGGACCGGGTGGCGAACGACCTGAGCAAATTGATCAGTGATGTGCTGGGGGGTGAGATTATGCTCCAAACGAAAACCCGGATTCCGGGTAGGGTTACGTTCTTGGGGTTCATCAAGAAGCATGCTGTCGCTCTATCGGCGTGCCAGTTGACGATTGGGTTTCCGAACATGAAGGTGAAAAGACAGGATTGCAAGATCAAGGCCAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

207

Amino Acids

22.62

Weight (kDa)

10.1

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 84 - 181 7.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 397
AccII CGCG 2 cut(s) 201, 296
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 4 cut(s) 174, 213, 296, 341
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 230
AfaI GTAC 2 cut(s) 325, 350
AfiI CCNNNNNNNGG 3 cut(s) 219, 371, 493
AgsI TTSAA 3 cut(s) 94, 142, 286
AluBI AGCT 2 cut(s) 194, 282
AluI AGCT 2 cut(s) 194, 282
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 385
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 5 cut(s) 353, 354, 416, 487, 495
AsuHPI GGTGA 4 cut(s) 196, 229, 473, 595
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 372
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 5 cut(s) 353, 354, 416, 487, 495
BcoDI GTCTC 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 5 cut(s) 353, 354, 416, 487, 495
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 412
BmrFI CCNGG 5 cut(s) 353, 354, 416, 487, 495
BmsI GCATC 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 431
BpuMI CCSGG 5 cut(s) 353, 354, 416, 487, 495
BsaJI CCNNGG 3 cut(s) 180, 319, 352
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 371, 493
Bse1I ACTGG 1 cut(s) 553
BseAI TCCGGA 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 180, 319, 352
BseGI GGATG 2 cut(s) 190, 343
BseLI CCNNNNNNNGG 3 cut(s) 219, 371, 493
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 372
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 201, 296
BshFI GGCC 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 6 cut(s) 220, 353, 365, 415, 487, 494
BslI CCNNNNNNNGG 3 cut(s) 219, 371, 493
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 222, 252, 441, 603
BspACI CCGC 4 cut(s) 174, 213, 296, 341
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 219
BspFNI CGCG 2 cut(s) 201, 296
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 3 cut(s) 180, 319, 352
BssMI GATC 4 cut(s) 222, 252, 441, 603
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 136, 241
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 4 cut(s) 280, 395, 531, 550
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 190, 343
BstFNI CGCG 2 cut(s) 201, 296
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 4 cut(s) 225, 255, 444, 606
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 222, 252, 441, 603
BstMWI GCNNNNNNNGC 3 cut(s) 394, 403, 545
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 5 cut(s) 351, 352, 414, 485, 493
BstUI CGCG 2 cut(s) 201, 296
BstV1I GCAGC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 190, 343
BtsIMutI CAGTG 1 cut(s) 451
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 4 cut(s) 280, 395, 531, 550
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 412
Cfr9I CCCGGG 1 cut(s) 352
CseI GACGC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 324, 349
CviAII CATG 4 cut(s) 13, 290, 530, 577
CviJI RGCY 5 cut(s) 27, 154, 194, 282, 611
CviKI_1 RGCY 5 cut(s) 27, 154, 194, 282, 611
CviQI GTAC 2 cut(s) 324, 349
DdeI CTNAG 1 cut(s) 431
DpnI GATC 4 cut(s) 224, 254, 443, 605
DpnII GATC 4 cut(s) 222, 252, 441, 603
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 16, 293, 533, 580
FaiI YATR 6 cut(s) 14, 61, 291, 470, 531, 578
FatI CATG 4 cut(s) 12, 289, 529, 576
FauI CCCGC 2 cut(s) 220, 289
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 2 cut(s) 197, 350
Fsp4HI GCNGC 1 cut(s) 386
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 386
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 611
HapII CCGG 6 cut(s) 220, 353, 365, 415, 487, 494
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 16, 293, 533, 580
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 2 cut(s) 244, 558
HindII GTYRAC 2 cut(s) 244, 558
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 2 cut(s) 121, 490
HpaII CCGG 6 cut(s) 220, 353, 365, 415, 487, 494
HphI GGTGA 4 cut(s) 196, 229, 473, 595
Hpy166II GTNNAC 4 cut(s) 244, 326, 412, 558
Hpy188I TCNGA 1 cut(s) 573
Hpy188III TCNNGA 5 cut(s) 91, 220, 250, 262, 523
Hpy8I GTNNAC 4 cut(s) 244, 326, 412, 558
HpyAV CCTTC 2 cut(s) 217, 574
HpyCH4III ACNGT 2 cut(s) 136, 241
HpyCH4IV ACGT 3 cut(s) 258, 360, 506
HpyCH4V TGCA 2 cut(s) 406, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 403, 545
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 3 cut(s) 258, 360, 506
Hsp92II CATG 4 cut(s) 16, 293, 533, 580
HspAI GCGC 1 cut(s) 294
Kpn2I TCCGGA 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 4 cut(s) 222, 252, 441, 603
LmnI GCTCC 2 cut(s) 199, 477
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 1 cut(s) 328
MaeII ACGT 3 cut(s) 258, 360, 506
MaeIII GTNAC 3 cut(s) 202, 356, 502
MalI GATC 4 cut(s) 224, 254, 443, 605
MboI GATC 4 cut(s) 222, 252, 441, 603
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 437
MnlI CCTC 6 cut(s) 119, 179, 187, 207, 257, 363
MroI TCCGGA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 6 cut(s) 220, 353, 365, 415, 487, 494
MspR9I CCNGG 5 cut(s) 353, 354, 416, 487, 495
MvnI CGCG 2 cut(s) 201, 296
MwoI GCNNNNNNNGC 3 cut(s) 394, 403, 545
NciI CCSGG 5 cut(s) 353, 354, 416, 487, 495
NdeII GATC 4 cut(s) 222, 252, 441, 603
NlaIII CATG 4 cut(s) 16, 293, 533, 580
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 533
PaeI GCATGC 1 cut(s) 533
PaqCI CACCTGC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 121, 490
PkrI GCNGC 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 412
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
RsaI GTAC 2 cut(s) 325, 350
RsaNI GTAC 2 cut(s) 324, 349
RseI CAYNNNNRTG 1 cut(s) 581
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 4 cut(s) 222, 252, 441, 603
Sau96I GGNCC 1 cut(s) 412
ScrFI CCNGG 5 cut(s) 353, 354, 416, 487, 495
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 1 cut(s) 412
SmaI CCCGGG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 581
SphI GCATGC 1 cut(s) 533
Sse9I AATT 1 cut(s) 437
SsiI CCGC 4 cut(s) 174, 213, 296, 341
StyD4I CCNGG 5 cut(s) 351, 352, 414, 485, 493
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 136, 241
TaiI ACGT 3 cut(s) 261, 363, 509
TaqI TCGA 2 cut(s) 5, 225
TasI AATT 1 cut(s) 437
TfiI GAWTC 2 cut(s) 121, 490
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 508, 593
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 412
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmaI CCCGGG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.