pycom12g19250

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013101
Physical Location & Seq
Reverse (-)
21151707 .. 21152345
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGCGGCGTCGATGATCTCAAACCTTGACGGAAGCCTCGACGAGTGGTCGATAGAGTCGAGCAGAAAAAAGCGGAGAAAAACCGGAGTCGTGGAGGAGGATCGGAACCGGAGCTCAAAAGCCGGAGTTCGATGGGGATCAGAGACGGAGCAACGGATCTACTCGACGAAGCTCGCGGAGGCCCTTCGTCAGGTGCGACAGAGATCGTCTACGTCATCGTCGGCTGCTGTGGCTAAGGTATCGGGCGGCGGGAGAGACGTGAAGGAAGCGGCAGACCGAGTTCTGGCTACGGCGGCGAAGGGGACGTCTCGGTGGAGCAGGGCGATCCTAAGAAGTCGAATGAGGCTGAGCAAAACGCTTCACAAGCGGAGAAGGGCGAGGGTAACAGGGGACAACCGGTTGAAGAAAACGGAGTTTAGGAGAGAGAGGAGGAAGTTACCGGCTGTGCAGAAAAAAGTTCGGGTTCTGAGCCAGTTGATTCCCGGCTGCCGGAAGACGTCGTTGCCAAACCTTCTAGAAGAAACTACCGATTATATAGCAGCTTTGAAGATGCAGGTCAAAGCCATGGCGGCTCTCGCCGAGTTACTTTCTGGTTCGCCGGTGAACCGCTCCGGCTCGAGTGTCAACTCTTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.5

Weight (kDa)

11.4

Isoelectric Point (pI)

69.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 49 - 113 5.5e-09 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 308, 500
Acc36I ACCTGC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 209
AccII CGCG 1 cut(s) 176
AclWI GGATC 4 cut(s) 108, 145, 164, 319
AcyI GRCGYC 3 cut(s) 8, 305, 497
AfiI CCNNNNNNNGG 3 cut(s) 190, 283, 489
AgeI ACCGGT 1 cut(s) 396
AgsI TTSAA 2 cut(s) 403, 547
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 1 cut(s) 259
AluBI AGCT 3 cut(s) 114, 172, 542
AluI AGCT 3 cut(s) 114, 172, 542
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 3 cut(s) 137, 249, 312
AlwI GGATC 4 cut(s) 108, 145, 164, 319
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 224, 486, 539
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 616
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 211, 473, 551
BccI CCATC 1 cut(s) 126
BceAI ACGGC 1 cut(s) 306
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 137, 249, 312
BfaI CTAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 8 cut(s) 6, 225, 247, 270, 294, 487, 540, 570
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 8 cut(s) 7, 226, 248, 271, 295, 488, 541, 571
Bme1390I CCNGG 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 616
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 136
BsaHI GRCGYC 3 cut(s) 8, 305, 497
BsaJI CCNNGG 1 cut(s) 564
BsaWI WCCGGW 3 cut(s) 83, 108, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 283, 489
Bse118I RCCGGY 3 cut(s) 396, 439, 598
Bse1I ACTGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 564
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 3 cut(s) 190, 283, 489
BseMII CTCAG 2 cut(s) 338, 458
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 110, 442
BseXI GCAGC 3 cut(s) 211, 473, 551
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 9 cut(s) 84, 109, 123, 397, 440, 483, 490, 599, 612
BslFI GGGAC 2 cut(s) 316, 404
BslI CCNNNNNNNGG 3 cut(s) 190, 283, 489
BsmAI GTCTC 3 cut(s) 137, 249, 312
BsmBI CGTCTC 3 cut(s) 137, 249, 312
BsmFI GGGAC 2 cut(s) 316, 404
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 6 cut(s) 15, 100, 137, 156, 203, 324
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 564
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 339, 459
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 4 cut(s) 108, 145, 164, 319
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 3 cut(s) 396, 439, 598
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 3 cut(s) 396, 439, 598
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
BssNI GRCGYC 3 cut(s) 8, 305, 497
BssT1I CCWWGG 1 cut(s) 564
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 3 cut(s) 8, 305, 497
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 4 cut(s) 234, 329, 347, 467
BstDSI CCRYGG 1 cut(s) 564
BstENI CCTNNNNNAGG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 6 cut(s) 18, 103, 140, 159, 206, 327
BstMAI GTCTC 3 cut(s) 137, 249, 312
BstMBI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
BstMWI GCNNNNNNNGC 5 cut(s) 230, 293, 364, 569, 575
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 211, 473, 551
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 259
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 174
Cfr10I RCCGGY 3 cut(s) 396, 439, 598
Cfr13I GGNCC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 396
CviAII CATG 1 cut(s) 565
DdeI CTNAG 4 cut(s) 234, 329, 347, 467
DpnI GATC 6 cut(s) 17, 102, 139, 158, 205, 326
DpnII GATC 6 cut(s) 15, 100, 137, 156, 203, 324
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 634
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 114
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 3 cut(s) 137, 249, 312
FaeI CATG 1 cut(s) 568
FaiI YATR 3 cut(s) 534, 536, 566
FaqI GGGAC 2 cut(s) 316, 404
FatI CATG 1 cut(s) 564
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 8 cut(s) 6, 225, 247, 270, 294, 487, 540, 570
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 8 cut(s) 6, 225, 247, 270, 294, 487, 540, 570
FspBI CTAG 1 cut(s) 515
GluI GCNGC 8 cut(s) 6, 225, 247, 270, 294, 487, 540, 570
HaeIII GGCC 1 cut(s) 182
HapII CCGG 9 cut(s) 84, 109, 123, 397, 440, 483, 490, 599, 612
Hin1I GRCGYC 3 cut(s) 8, 305, 497
Hin1II CATG 1 cut(s) 568
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 56, 87, 478
HpaII CCGG 9 cut(s) 84, 109, 123, 397, 440, 483, 490, 599, 612
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 3 cut(s) 210, 604, 625
Hpy188I TCNGA 3 cut(s) 105, 142, 468
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 3 cut(s) 210, 604, 625
Hpy99I CGWCG 5 cut(s) 13, 44, 169, 223, 502
HpyAV CCTTC 5 cut(s) 194, 256, 292, 366, 521
HpyCH4IV ACGT 4 cut(s) 212, 258, 305, 497
HpyCH4V TGCA 2 cut(s) 448, 553
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 293, 364, 569, 575
HpyF3I CTNAG 4 cut(s) 234, 329, 347, 467
HpySE526I ACGT 4 cut(s) 212, 258, 305, 497
Hsp92I GRCGYC 3 cut(s) 8, 305, 497
Hsp92II CATG 1 cut(s) 568
Kzo9I GATC 6 cut(s) 15, 100, 137, 156, 203, 324
LmnI GCTCC 4 cut(s) 111, 148, 315, 614
Lsp1109I GCAGC 3 cut(s) 211, 473, 551
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 515
MaeII ACGT 4 cut(s) 212, 258, 305, 497
MaeIII GTNAC 3 cut(s) 382, 435, 582
MalI GATC 6 cut(s) 17, 102, 139, 158, 205, 326
MbiI CCGCTC 1 cut(s) 609
MboI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
MboII GAAGA 5 cut(s) 415, 505, 530, 559, 621
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 116
MlyI GAGTC 2 cut(s) 65, 96
MnlI CCTC 8 cut(s) 47, 88, 91, 172, 336, 372, 420, 423
MspI CCGG 9 cut(s) 84, 109, 123, 397, 440, 483, 490, 599, 612
MspR9I CCNGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 5 cut(s) 230, 293, 364, 569, 575
NciI CCSGG 1 cut(s) 483
NcoI CCATGG 1 cut(s) 564
NdeII GATC 6 cut(s) 15, 100, 137, 156, 203, 324
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 1 cut(s) 107
NmeAIII GCCGAG 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 616
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 56, 193
PfeI GAWTC 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 396
PkrI GCNGC 8 cut(s) 7, 226, 248, 271, 295, 488, 541, 571
PleI GAGTC 2 cut(s) 64, 95
PpsI GAGTC 2 cut(s) 64, 95
Psp124BI GAGCTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 181
PspXI VCTCGAGB 1 cut(s) 616
PsuI RGATCY 1 cut(s) 156
SacI GAGCTC 1 cut(s) 116
SatI GCNGC 8 cut(s) 6, 225, 247, 270, 294, 487, 540, 570
Sau3AI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 65, 96
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 540
Sfr274I CTCGAG 1 cut(s) 616
SgrAI CRCCGGYG 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SspMI CTAG 1 cut(s) 515
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 564
TaiI ACGT 4 cut(s) 215, 261, 308, 500
TaqI TCGA 9 cut(s) 11, 39, 50, 59, 130, 164, 337, 617, 632
TaqII GACCGA 1 cut(s) 291
TauI GCSGC 5 cut(s) 8, 249, 272, 296, 572
TfiI GAWTC 1 cut(s) 478
TseI GCWGC 3 cut(s) 224, 486, 539
TspGWI ACGGA 4 cut(s) 45, 161, 169, 425
XagI CCTNNNNNAGG 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 515
ZraI GACGTC 2 cut(s) 306, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.