pycom12g20410

Protein AUXIN RESPONSE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
21942185 .. 21944316
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1464 bp
ATGGTGACCATCACAGAGGAAGACGAAGACCAACACCGCCGCGACCCGAAACCGAAACCGAAACCGAAACGGTCGTCACCACAAGAGATCAAGCCAACTCCACCACCAAAACGCACTTCGCCGCCGCCAAAACCACCGCAAAACTCTCAAAATCCATTCGCTTTCTGGTTCTACTTCACTCTCACTGTCTCTCTCGTCACCGTCGTCTTCATTTCTCTCTCCTCTCTTTCCCCGCAAGACCCGAAGTCTTGGTTTTTGAGCCTGCCAGCCGCTCTCCGCCAGCACTACTCCAAGGGTCGCACCATAAAGGTACAAACTCACCCGAATCAGAACCCGGTTGAAGTTTTTTGTACTGAGAAAGGTTCTGTGGGATCGGAAAATGCTGTTATTGTTCATGGGCTGGGACTCAGCTCCTACTCTTTTCGAAAAGTTGTTAAATTTTTAGGGTCCAAAGGGGTTCGTGCGGTTGCGTTTGATTTGCCCGGAAACGGGTTTTCGGACAAATCGGTGGTGGAGGTTGGAGAGGGGGAAACTGGGATTTTAGGGAGGTTTTGGAATATATATGGTGAAATGCAGGAAAAGGGTTTGTTTTGGGCATTTGATCGGATAATCGAAACAGGGCAGATGCCGTATGAGGAAATCGAAGCTCGGGTTTCGAAACAGAAGGTTGTGAAGCCGATTGAAATGGGTCCTGAGGAGATTGGTAAGGTGCTGGGGCAAGTAATTGAGACGACAGGTTTAGCTCCTGTGCATTTGGTGTTGCATGATTCAGCTTTGGGGATGGTTGCCAATTGGGTTTTGGAAAATGTGGGATCGGTGAGGAGTGTAACGCTCGTTGATACCTCACCCAGATCGACGGGTGCTTTGCCTTTGTGGGTTTTGGGAGTGCCAATGATTAGGGAGTTTGTGCTGAGGTTTTCACATGCTTATGCTTGGTTGGTTAAAATGAGTTGCTCAAGGGGGATTGATGTTTCGGATATCGATGCACATAGACTTCTGTTGAAGGGTAGGGATGGGACTAGGGCCATTGTTGGGATGGGAAAGAAGTTGAATCATAGCTTTGATATAGCAGAATGGGGGGGTTCGGATGGATTGAAAGGTGTGCCAATGCAGGTGCTTTGGTCTAGCAGTTGGTCCAAGGAATGGAGTGAAGAGGGAAACCGTGTTGCAAGTGCACTTCCACAGGCAACTTTTGTCACCCATTCCGGCGGGCGGTGGCCTCAGGAGGACGCAGCTGATGAGGTAGCTGAAAATATTTCTTATTTTGTGTCCTCATTGCCTGCAACTGTCAGAAAGGTTGAAGAAGAGCCGATCCCCGAGCATATTCAGAAAATGCTCGATGAAGCAAAAATCAGCGACCATCATCACCATGACCATGGTGACGGGCATGACCACCATCATAGTCATGGAGCTAGTTATCCTGATGCGTACGGTCTTGGCCATGGTCATGGATTGGCAAGTTGA

Protein Analysis

488

Amino Acids

53.79

Weight (kDa)

6.45

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 129 - 284 7.1e-10 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 129 - 417 5.1e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011194)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 1 cut(s) 1102
AccB7I CCANNNNNTGG 1 cut(s) 1143
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 42
AclWI GGATC 3 cut(s) 379, 820, 1306
AcoI YGGCCR 1 cut(s) 1438
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 3 cut(s) 312, 352, 1430
AfiI CCNNNNNNNGG 5 cut(s) 488, 489, 1032, 1143, 1212
AgsI TTSAA 6 cut(s) 341, 683, 1003, 1051, 1096, 1301
AhdI GACNNNNNGTC 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 8 cut(s) 411, 647, 743, 773, 1059, 1235, 1247, 1412
AluI AGCT 8 cut(s) 411, 647, 743, 773, 1059, 1235, 1247, 1412
Alw21I GWGCWC 1 cut(s) 1177
Alw26I GTCTC 2 cut(s) 193, 722
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 3 cut(s) 379, 820, 1306
Ama87I CYCGRG 2 cut(s) 648, 1316
AoxI GGCC 3 cut(s) 1023, 1217, 1438
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 1 cut(s) 1232
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 4 cut(s) 59, 91, 847, 879
AspS9I GGNCC 4 cut(s) 447, 689, 1023, 1134
AsuC2I CCSGG 2 cut(s) 335, 483
AsuII TTCGAA 2 cut(s) 424, 656
AvaI CYCGRG 2 cut(s) 648, 1316
AvaII GGWCC 3 cut(s) 447, 689, 1134
AxyI CCTNAGG 2 cut(s) 693, 1221
BaeGI GKGCMC 1 cut(s) 1177
BalI TGGCCA 1 cut(s) 1440
BbsI GAAGAC 3 cut(s) 27, 33, 199
Bbv12I GWGCWC 1 cut(s) 1177
BbvCI CCTCAGC 1 cut(s) 911
BbvI GCAGC 1 cut(s) 1244
BccI CCATC 7 cut(s) 17, 775, 1007, 1030, 1082, 1368, 1404
BceAI ACGGC 1 cut(s) 613
BcnI CCSGG 2 cut(s) 335, 483
BcoDI GTCTC 2 cut(s) 193, 722
BfaI CTAG 3 cut(s) 1020, 1125, 1413
BfuAI ACCTGC 1 cut(s) 1102
BisI GCNGC 5 cut(s) 40, 122, 125, 270, 1233
BlsI GCNGC 5 cut(s) 41, 123, 126, 271, 1234
Bme1390I CCNGG 2 cut(s) 335, 483
Bme18I GGWCC 3 cut(s) 447, 689, 1134
BmeRI GACNNNNNGTC 1 cut(s) 244
BmeT110I CYCGRG 2 cut(s) 648, 1316
BmgT120I GGNCC 4 cut(s) 447, 689, 1023, 1134
BmiI GGNNCC 2 cut(s) 448, 690
BmrFI CCNGG 2 cut(s) 335, 483
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 3 cut(s) 615, 973, 1414
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 3 cut(s) 27, 33, 199
Bpu10I CCTNAGC 1 cut(s) 911
Bpu14I TTCGAA 2 cut(s) 424, 656
BpuEI CTTGAG 1 cut(s) 940
BpuMI CCSGG 2 cut(s) 335, 483
Bsa29I ATCGAT 1 cut(s) 981
BsaJI CCNNGG 4 cut(s) 291, 1137, 1375, 1441
Bsc4I CCNNNNNNNGG 5 cut(s) 488, 489, 1032, 1143, 1212
Bse1I ACTGG 1 cut(s) 538
Bse21I CCTNAGG 2 cut(s) 693, 1221
Bse3DI GCAATG 1 cut(s) 1274
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 4 cut(s) 291, 1137, 1375, 1441
BseGI GGATG 4 cut(s) 786, 1018, 1041, 1093
BseLI CCNNNNNNNGG 5 cut(s) 488, 489, 1032, 1143, 1212
BseMI GCAATG 1 cut(s) 1274
BseMII CTCAG 5 cut(s) 345, 421, 684, 902, 1235
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 3 cut(s) 211, 710, 835
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 1 cut(s) 1244
BseYI CCCAGC 2 cut(s) 400, 712
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 1025, 1219, 1440
BshVI ATCGAT 1 cut(s) 981
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 1177
BsiHKCI CYCGRG 2 cut(s) 648, 1316
BsiSI CCGG 3 cut(s) 335, 483, 1206
BsiWI CGTACG 1 cut(s) 1428
BslFI GGGAC 2 cut(s) 417, 1030
BslI CCNNNNNNNGG 5 cut(s) 488, 489, 1032, 1143, 1212
BsmAI GTCTC 2 cut(s) 193, 722
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 417, 1030
BsnI GGCC 3 cut(s) 1025, 1219, 1440
BsoBI CYCGRG 2 cut(s) 648, 1316
Bsp119I TTCGAA 2 cut(s) 424, 656
Bsp1286I GDGCHC 1 cut(s) 1177
Bsp143I GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
Bsp19I CCATGG 2 cut(s) 1375, 1441
BspANI GGCC 3 cut(s) 1025, 1219, 1440
BspCNI CTCAG 5 cut(s) 346, 420, 685, 903, 1234
BspDI ATCGAT 1 cut(s) 981
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 448, 690
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 3 cut(s) 379, 820, 1306
BspQI GCTCTTC 1 cut(s) 1299
BspT104I TTCGAA 2 cut(s) 424, 656
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 1274
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 4 cut(s) 291, 1137, 1375, 1441
BssMI GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
BssT1I CCWWGG 4 cut(s) 291, 1137, 1375, 1441
Bst4CI ACNGT 6 cut(s) 72, 187, 202, 1163, 1288, 1433
Bst6I CTCTTC 2 cut(s) 1146, 1299
BstBI TTCGAA 2 cut(s) 424, 656
BstC8I GCNNGC 5 cut(s) 263, 267, 281, 1211, 1281
BstDEI CTNAG 5 cut(s) 354, 407, 693, 911, 1221
BstDSI CCRYGG 2 cut(s) 1375, 1441
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 4 cut(s) 786, 1018, 1041, 1093
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 6 cut(s) 90, 374, 604, 815, 854, 1314
BstMAI GTCTC 2 cut(s) 193, 722
BstMBI GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
BstMCI CGRYCG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 926
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 333, 481
BstSLI GKGCMC 1 cut(s) 1177
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 1244
BstV2I GAAGAC 3 cut(s) 27, 33, 199
BstXI CCANNNNNNTGG 2 cut(s) 1376, 1448
Bsu15I ATCGAT 1 cut(s) 981
Bsu36I CCTNAGG 2 cut(s) 693, 1221
BsuRI GGCC 3 cut(s) 1025, 1219, 1440
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 2 cut(s) 1375, 1441
BtsCI GGATG 4 cut(s) 786, 1018, 1041, 1093
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 5 cut(s) 263, 267, 281, 1211, 1281
Cfr13I GGNCC 4 cut(s) 447, 689, 1023, 1134
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 1 cut(s) 1238
Csp6I GTAC 3 cut(s) 311, 351, 1429
CviAII CATG 9 cut(s) 395, 764, 923, 1370, 1376, 1388, 1406, 1442, 1448
CviQI GTAC 3 cut(s) 311, 351, 1429
DdeI CTNAG 5 cut(s) 354, 407, 693, 911, 1221
DpnI GATC 6 cut(s) 89, 373, 603, 814, 853, 1313
DpnII GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 1438
Eam1104I CTCTTC 2 cut(s) 1146, 1299
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 2 cut(s) 1146, 1299
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 4 cut(s) 291, 1137, 1375, 1441
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 3 cut(s) 447, 689, 1134
Eco81I CCTNAGG 2 cut(s) 693, 1221
Eco88I CYCGRG 2 cut(s) 648, 1316
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 689
EcoO65I GGTNACC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 4 cut(s) 291, 1137, 1375, 1441
ErhI CCWWGG 4 cut(s) 291, 1137, 1375, 1441
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 9 cut(s) 398, 767, 926, 1373, 1379, 1391, 1409, 1445, 1451
FaqI GGGAC 2 cut(s) 417, 1030
FatI CATG 9 cut(s) 394, 763, 922, 1369, 1375, 1387, 1405, 1441, 1447
FauI CCCGC 2 cut(s) 240, 1202
Fnu4HI GCNGC 5 cut(s) 40, 122, 125, 270, 1233
FokI GGATG 4 cut(s) 793, 1025, 1048, 1100
Fsp4HI GCNGC 5 cut(s) 40, 122, 125, 270, 1233
FspBI CTAG 3 cut(s) 1020, 1125, 1413
GluI GCNGC 5 cut(s) 40, 122, 125, 270, 1233
GsaI CCCAGC 2 cut(s) 404, 716
HaeIII GGCC 3 cut(s) 1025, 1219, 1440
HapII CCGG 3 cut(s) 335, 483, 1206
HgaI GACGC 1 cut(s) 1238
Hin1II CATG 9 cut(s) 398, 767, 926, 1373, 1379, 1391, 1409, 1445, 1451
HinfI GANTC 4 cut(s) 325, 405, 767, 1051
HpaII CCGG 3 cut(s) 335, 483, 1206
Hpy166II GTNNAC 1 cut(s) 1175
Hpy188I TCNGA 8 cut(s) 330, 376, 499, 606, 976, 1087, 1292, 1329
Hpy188III TCNNGA 3 cut(s) 692, 1223, 1421
Hpy8I GTNNAC 1 cut(s) 1175
Hpy99I CGWCG 2 cut(s) 206, 859
HpyAV CCTTC 2 cut(s) 658, 997
HpyCH4III ACNGT 6 cut(s) 72, 187, 202, 1163, 1288, 1433
HpyCH4V TGCA 8 cut(s) 574, 751, 763, 986, 1111, 1169, 1175, 1283
HpyF3I CTNAG 5 cut(s) 354, 407, 693, 911, 1221
Hsp92II CATG 9 cut(s) 398, 767, 926, 1373, 1379, 1391, 1409, 1445, 1451
Kzo9I GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
LguI GCTCTTC 1 cut(s) 1299
LmnI GCTCC 3 cut(s) 416, 748, 1409
Lsp1109I GCAGC 1 cut(s) 1244
LweI GCATC 3 cut(s) 615, 973, 1414
MaeI CTAG 3 cut(s) 1020, 1125, 1413
MaeIII GTNAC 6 cut(s) 4, 75, 196, 826, 1195, 1379
MalI GATC 6 cut(s) 89, 373, 603, 814, 853, 1313
MbiI CCGCTC 1 cut(s) 272
MboI GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
MboII GAAGA 6 cut(s) 32, 38, 199, 1163, 1313, 1316
MfeI CAATTG 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 1177
MlsI TGGCCA 1 cut(s) 1440
MluCI AATT 3 cut(s) 437, 723, 790
MluNI TGGCCA 1 cut(s) 1440
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 499
Mox20I TGGCCA 1 cut(s) 1440
MscI TGGCCA 1 cut(s) 1440
MseI TTAA 2 cut(s) 435, 942
MslI CAYNNNNRTG 5 cut(s) 927, 1368, 1374, 1404, 1446
Msp20I TGGCCA 1 cut(s) 1440
MspA1I CMGCKG 1 cut(s) 1235
MspI CCGG 3 cut(s) 335, 483, 1206
MspR9I CCNGG 2 cut(s) 335, 483
MunI CAATTG 1 cut(s) 790
MvnI CGCG 1 cut(s) 42
NciI CCSGG 2 cut(s) 335, 483
NcoI CCATGG 2 cut(s) 1375, 1441
NdeII GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
NlaIII CATG 9 cut(s) 398, 767, 926, 1373, 1379, 1391, 1409, 1445, 1451
NlaIV GGNNCC 2 cut(s) 448, 690
NmuCI GTSAC 5 cut(s) 4, 75, 196, 1195, 1379
NspI RCATGY 1 cut(s) 926
NspV TTCGAA 2 cut(s) 424, 656
PaqCI CACCTGC 1 cut(s) 1102
PciSI GCTCTTC 1 cut(s) 1299
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 3 cut(s) 325, 767, 1051
Pfl23II CGTACG 1 cut(s) 1428
PflMI CCANNNNNTGG 1 cut(s) 1143
PkrI GCNGC 5 cut(s) 41, 123, 126, 271, 1234
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 689
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 2 cut(s) 400, 712
PspLI CGTACG 1 cut(s) 1428
PspN4I GGNNCC 2 cut(s) 448, 690
PspPI GGNCC 4 cut(s) 447, 689, 1023, 1134
PspPPI RGGWCCY 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 1235
RsaI GTAC 3 cut(s) 312, 352, 1430
RsaNI GTAC 3 cut(s) 311, 351, 1429
RseI CAYNNNNRTG 5 cut(s) 927, 1368, 1374, 1404, 1446
SapI GCTCTTC 1 cut(s) 1299
SaqAI TTAA 2 cut(s) 435, 942
SatI GCNGC 5 cut(s) 40, 122, 125, 270, 1233
Sau3AI GATC 6 cut(s) 87, 371, 601, 812, 851, 1311
Sau96I GGNCC 4 cut(s) 447, 689, 1023, 1134
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 2 cut(s) 335, 483
SduI GDGCHC 1 cut(s) 1177
SfaNI GCATC 3 cut(s) 615, 973, 1414
SfuI TTCGAA 2 cut(s) 424, 656
SinI GGWCC 3 cut(s) 447, 689, 1134
SmiMI CAYNNNNRTG 5 cut(s) 927, 1368, 1374, 1404, 1446
SmlI CTYRAG 1 cut(s) 955
SmoI CTYRAG 1 cut(s) 955
Sse9I AATT 3 cut(s) 437, 723, 790
SspI AATATT 1 cut(s) 1255
SspMI CTAG 3 cut(s) 1020, 1125, 1413
StyD4I CCNGG 2 cut(s) 333, 481
StyI CCWWGG 4 cut(s) 291, 1137, 1375, 1441
TaaI ACNGT 6 cut(s) 72, 187, 202, 1163, 1288, 1433
TaqI TCGA 7 cut(s) 424, 612, 642, 656, 854, 981, 1338
TasI AATT 3 cut(s) 437, 723, 790
TatI WGTACW 1 cut(s) 350
TauI GCSGC 4 cut(s) 42, 124, 127, 272
TfiI GAWTC 3 cut(s) 325, 767, 1051
Tru1I TTAA 2 cut(s) 435, 942
Tru9I TTAA 2 cut(s) 435, 942
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 5 cut(s) 4, 75, 196, 1195, 1379
TseI GCWGC 1 cut(s) 1232
Tsp45I GTSAC 5 cut(s) 4, 75, 196, 1195, 1379
TspDTI ATGAA 3 cut(s) 199, 383, 1356
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 1143
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 3 cut(s) 447, 689, 1134
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 4 cut(s) 162, 796, 1033, 1403
XspI CTAG 3 cut(s) 1020, 1125, 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.