Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011570

Physical Location & Seq

Genomic Coordinates Reverse (-)

22721641 .. 22722584

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGCTTTACGGGGCAACCGGCTAGGACAAAGAAACAAGCTCAGAAAAATGCTGCAATGGCTGCTTGGGCAGCCCTGAAAAGATTGGCTCAACGTGACTCATCTTCTTCCTCGGTGGAGCCTAGAGGCAATGAAGAACAGGAACAAGTCATTATTGGTCGTATTCTTGGAAGTTTGCGGCCATCTGAGTCTATTAATACTCAAAATGATCGCCGACATGGACAGCAAACATACATTCCCATCTTCCAGAAATCCCCTCTGCCACCACCAAGCTTATATCCTTTGCAATTCCATAACTGGGGTTATTCTAATTATTCCCCTGAAATAGCAATGTACGAATTATGGCAGCAAGAGCAATTATTACAGCAACAAAATCACCTGCTGGCACTTCCTGTTACTCCATCAATTCCTCAGATATATCCATTTATGCAATCTGTGCTTCGCCCAAATCACTGTCTATACTTTCCAGCAAGAGAGCAAGAGCCGACCTCAGCAGGACCCAGAATTACAATTGCTACCTCAGGCCCATCATTTTGCTTCTCGAACCATTTGGTTCCTAACCCGCCAATCAGGGGCAAGTCCACGGTGACTATTCGAGAGATACAGGAAGAAAAGCCAGAAGAATCACCCGGGTACTCTCCTTCCGTAGTTTCAGATCCCTTTAGTCCTGGAAACAGCAGCGCTGAAGTAAGAGTCCAGGAACAAGTTCAGCTTGAGAAACAGAACCTAGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

246

Amino Acids

27.51

Weight (kDa)

6.98

Isoelectric Point (pI)

72.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04080 FvH4_6g04080 FvH4_6g04080
malus_domestica	MD04G1216700.v1.1 MD12G1233300.v1.1
prunus_persica	Prupe.6G336400_v2.0.a1
pyrus_communis	pycom04g19270 pycom12g21580
rosa_chinensis	RchiOBHm_Chr3g0452631
rosa_laevigata	RLG00000006117 RLG00000025860
rosa_multiflora	Rmu_sc0030581.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429670
rosa_rugosa	Rorug02G0642000 Rorug02G0642100
rosa_samantha	Rh3AG044400 Rh3BG046700 Rh3CG045200 Rh3DG045600
rosa_wichuraiana	Rw3G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	387
AciI	CCGC	2 cut(s)	178, 563
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	2 cut(s)	335, 635
AfeI	AGCGCT	1 cut(s)	682
AfiI	CCNNNNNNNGG	2 cut(s)	298, 572
AjnI	CCWGG	2 cut(s)	667, 696
AluBI	AGCT	4 cut(s)	6, 41, 273, 712
AluI	AGCT	4 cut(s)	6, 41, 273, 712
AlwI	GGATC	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	682
AoxI	GGCC	2 cut(s)	179, 523
ApeKI	GCWGC	5 cut(s)	53, 62, 71, 346, 678
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	705
AspA2I	CCTAGG	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	497, 524
AsuC2I	CCSGG	2 cut(s)	630, 631
AsuHPI	GGTGA	3 cut(s)	368, 598, 618
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	497
AvrII	CCTAGG	1 cut(s)	727
AxyI	CCTNAGG	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	490
BbvI	GCAGC	5 cut(s)	40, 49, 83, 358, 690
BccI	CCATC	4 cut(s)	190, 248, 409, 535
BciT130I	CCWGG	2 cut(s)	669, 698
BcnI	CCSGG	2 cut(s)	630, 631
BfaI	CTAG	3 cut(s)	24, 123, 728
BfoI	RGCGCY	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	387
BisI	GCNGC	6 cut(s)	54, 63, 72, 179, 347, 679
BlnI	CCTAGG	1 cut(s)	727
BlsI	GCNGC	6 cut(s)	55, 64, 73, 180, 348, 680
Bme1390I	CCNGG	4 cut(s)	630, 631, 669, 698
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	497, 524
BmiI	GGNNCC	3 cut(s)	120, 499, 555
BmrFI	CCNGG	4 cut(s)	630, 631, 669, 698
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	2 cut(s)	630, 631
BsaJI	CCNNGG	4 cut(s)	111, 582, 629, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 572
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	1 cut(s)	520
Bse3DI	GCAATG	3 cut(s)	63, 136, 336
BseBI	CCWGG	2 cut(s)	669, 698
BseDI	CCNNGG	4 cut(s)	111, 582, 629, 727
BseLI	CCNNNNNNNGG	2 cut(s)	298, 572
BseMI	GCAATG	3 cut(s)	63, 136, 336
BseMII	CTCAG	5 cut(s)	56, 177, 425, 504, 534
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	5 cut(s)	40, 49, 83, 358, 690
BshFI	GGCC	2 cut(s)	181, 525
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	20, 630
BslI	CCNNNNNNNGG	2 cut(s)	298, 572
BsnI	GGCC	2 cut(s)	181, 525
BsoBI	CYCGRG	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	208, 655
BspACI	CCGC	2 cut(s)	178, 563
BspANI	GGCC	2 cut(s)	181, 525
BspCNI	CTCAG	5 cut(s)	55, 178, 424, 503, 533
BspLI	GGNNCC	3 cut(s)	120, 499, 555
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	650
BsrDI	GCAATG	3 cut(s)	63, 136, 336
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	4 cut(s)	111, 582, 629, 727
BssMI	GATC	2 cut(s)	208, 655
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	669, 698
Bst4CI	ACNGT	2 cut(s)	455, 586
BstAPI	GCANNNNNTGC	2 cut(s)	62, 436
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	42, 186, 411, 490, 520
BstDSI	CCRYGG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	2 cut(s)	211, 658
BstMBI	GATC	2 cut(s)	208, 655
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 62, 68, 71, 352, 436
BstNI	CCWGG	2 cut(s)	669, 698
BstSCI	CCNGG	4 cut(s)	628, 629, 667, 696
BstV1I	GCAGC	5 cut(s)	40, 49, 83, 358, 690
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
Bsu36I	CCTNAGG	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	181, 525
BtgI	CCRYGG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	497, 524
Cfr9I	CCCGGG	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	334, 634
CviAII	CATG	1 cut(s)	218
CviQI	GTAC	2 cut(s)	334, 634
DdeI	CTNAG	5 cut(s)	42, 186, 411, 490, 520
DpnI	GATC	2 cut(s)	210, 657
DpnII	GATC	2 cut(s)	208, 655
EaeI	YGGCCR	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	497
Eco47III	AGCGCT	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	667, 696
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	1 cut(s)	221
FaiI	YATR	8 cut(s)	219, 232, 277, 294, 343, 418, 428, 460
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	570
Fnu4HI	GCNGC	6 cut(s)	54, 63, 72, 179, 347, 679
Fsp4HI	GCNGC	6 cut(s)	54, 63, 72, 179, 347, 679
FspBI	CTAG	3 cut(s)	24, 123, 728
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	6 cut(s)	54, 63, 72, 179, 347, 679
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	181, 525
HapII	CCGG	2 cut(s)	20, 630
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	4 cut(s)	98, 188, 623, 693
HpaII	CCGG	2 cut(s)	20, 630
HphI	GGTGA	3 cut(s)	368, 598, 618
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	4 cut(s)	45, 187, 414, 655
Hpy188III	TCNNGA	3 cut(s)	247, 541, 596
Hpy8I	GTNNAC	1 cut(s)	582
HpyAV	CCTTC	1 cut(s)	651
HpyCH4III	ACNGT	2 cut(s)	455, 586
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	56, 286, 430
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 62, 68, 71, 352, 436
HpyF3I	CTNAG	5 cut(s)	42, 186, 411, 490, 520
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	208, 655
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	5 cut(s)	40, 49, 83, 358, 690
MaeI	CTAG	3 cut(s)	24, 123, 728
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	95, 394, 586
MalI	GATC	2 cut(s)	210, 657
MboI	GATC	2 cut(s)	208, 655
MboII	GAAGA	6 cut(s)	96, 99, 146, 235, 620, 632
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	655
MluCI	AATT	7 cut(s)	287, 310, 338, 356, 405, 504, 510
MlyI	GAGTC	3 cut(s)	92, 197, 702
MnlI	CCTC	6 cut(s)	119, 121, 267, 420, 499, 529
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	1 cut(s)	195
MspI	CCGG	2 cut(s)	20, 630
MspR9I	CCNGG	4 cut(s)	630, 631, 669, 698
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	669, 698
MwoI	GCNNNNNNNGC	6 cut(s)	59, 62, 68, 71, 352, 436
NciI	CCSGG	2 cut(s)	630, 631
NdeII	GATC	2 cut(s)	208, 655
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	3 cut(s)	120, 499, 555
NmuCI	GTSAC	2 cut(s)	95, 586
PaqCI	CACCTGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	623
PfoI	TCCNGGA	2 cut(s)	667, 696
PkrI	GCNGC	6 cut(s)	55, 64, 73, 180, 348, 680
PleI	GAGTC	3 cut(s)	92, 196, 701
PpsI	GAGTC	3 cut(s)	92, 196, 701
PpuMI	RGGWCCY	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	667, 696
PspGI	CCWGG	2 cut(s)	667, 696
PspN4I	GGNNCC	3 cut(s)	120, 499, 555
PspPI	GGNCC	2 cut(s)	497, 524
PspPPI	RGGWCCY	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	2 cut(s)	335, 635
RsaNI	GTAC	2 cut(s)	334, 634
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	6 cut(s)	54, 63, 72, 179, 347, 679
Sau3AI	GATC	2 cut(s)	208, 655
Sau96I	GGNCC	2 cut(s)	497, 524
SchI	GAGTC	3 cut(s)	92, 197, 702
ScrFI	CCNGG	4 cut(s)	630, 631, 669, 698
SetI	ASST	9 cut(s)	8, 43, 97, 275, 381, 491, 521, 714, 729
SinI	GGWCC	1 cut(s)	497
SmaI	CCCGGG	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	7 cut(s)	287, 310, 338, 356, 405, 504, 510
SsiI	CCGC	2 cut(s)	178, 563
SspMI	CTAG	3 cut(s)	24, 123, 728
StyD4I	CCNGG	4 cut(s)	628, 629, 667, 696
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	455, 586
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	542, 595
TasI	AATT	7 cut(s)	287, 310, 338, 356, 405, 504, 510
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	95, 586
TseI	GCWGC	5 cut(s)	53, 62, 71, 346, 678
Tsp45I	GTSAC	2 cut(s)	95, 586
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	634
TspMI	CCCGGG	1 cut(s)	629
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	629
XmaJI	CCTAGG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	24, 123, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.