Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030581.1

Orthogroup ID

OG0011570

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2997

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 866 bp

atgagtcctcctagaagtcttagaccaccatctgctgcaggtcctgtactgatcagaactgtaagaccgacttcctcactaggatctagaccgtctaggccacagaatttgccaaccaggtttcctgctccaccaagaatgagagctggaatcccttcatattcagccacacccacgcttcaaagaatggaatttggcagaccaagacctagcttcatggcaccagctgttcgaattagagggagaagtcatcctccaccttgcaagacttcggtgaccagtggccggccgcctactccagtgatgggaatccggcgaccggtgaccggaatccagcgaccgatgaccggaatccagggaacggtcaccggaatccggctaccggactgcaaatttccagcacgacgttcattcccttggccgccacaccggtcttccaatcaaactcaatggtcaacgtcgtcgggggcttgtgatcgggctcccagaaatacgccatgtagtctccggcctccaccgcctgaaaagcaaactgacctgattccacaagctcttagtagtgatctagaggagggagcgccgattgggtctagaggagggagggcggagcgccagagagagcagacgctgcggaatcggagaatatcgacgcgggtttcgaggatttttccgatctcaatcaccgaaggttcttacctttctcaccatgcaggcgccgggcaccaagatctcagttcgcgactcgccgcgcagacctctggtgttgtcgccgcactttccaatctaggttcgcgactccccaggcagtcagctggtgccggagaattggcttgcgatagagagatagagacagagagaagccggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

288

Amino Acids

31.27

Weight (kDa)

11.81

Isoelectric Point (pI)

72.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04080 FvH4_6g04080 FvH4_6g04080
malus_domestica	MD04G1216700.v1.1 MD12G1233300.v1.1
prunus_persica	Prupe.6G336400_v2.0.a1
pyrus_communis	pycom04g19270 pycom12g21580
rosa_chinensis	RchiOBHm_Chr3g0452631
rosa_laevigata	RLG00000006117 RLG00000025860
rosa_multiflora	Rmu_sc0030581.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429670
rosa_rugosa	Rorug02G0642000 Rorug02G0642100
rosa_samantha	Rh3AG044400 Rh3BG046700 Rh3CG045200 Rh3DG045600
rosa_wichuraiana	Rw3G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	4 cut(s)	220, 713, 720, 815
AccII	CGCG	4 cut(s)	652, 739, 749, 793
AciI	CCGC	8 cut(s)	290, 422, 518, 605, 631, 652, 747, 771
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	3 cut(s)	283, 287, 419
AcsI	RAATTY	3 cut(s)	106, 191, 392
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	8 cut(s)	285, 305, 319, 326, 347, 361, 375, 382
AgeI	ACCGGT	2 cut(s)	319, 429
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	116, 354, 800
AluBI	AGCT	5 cut(s)	146, 213, 227, 551, 812
AluI	AGCT	5 cut(s)	146, 213, 227, 551, 812
Alw26I	GTCTC	2 cut(s)	509, 842
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	2 cut(s)	44, 628
AoxI	GGCC	5 cut(s)	98, 283, 287, 419, 509
ApeKI	GCWGC	2 cut(s)	35, 628
ApoI	RAATTY	3 cut(s)	106, 191, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AsiGI	ACCGGT	2 cut(s)	319, 429
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	4 cut(s)	580, 612, 716, 751
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	5 cut(s)	286, 334, 358, 673, 695
AsuII	TTCGAA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	4 cut(s)	220, 713, 720, 815
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	22, 615
BccI	CCATC	2 cut(s)	37, 298
BciT130I	CCWGG	3 cut(s)	118, 356, 802
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	509, 842
BfaI	CTAG	8 cut(s)	12, 80, 87, 96, 210, 566, 591, 785
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	3 cut(s)	581, 613, 717
BfuAI	ACCTGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	6 cut(s)	36, 290, 422, 629, 747, 771
BlsI	GCNGC	6 cut(s)	37, 291, 423, 630, 748, 772
Bme1390I	CCNGG	4 cut(s)	118, 356, 718, 802
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	5 cut(s)	222, 483, 715, 722, 817
BmrFI	CCNGG	4 cut(s)	118, 356, 718, 802
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	718
BsaBI	GATNNNNATC	2 cut(s)	308, 677
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	355, 416, 800
BsaWI	WCCGGW	6 cut(s)	319, 326, 347, 368, 382, 429
Bsc4I	CCNNNNNNNGG	8 cut(s)	285, 305, 319, 326, 347, 361, 375, 382
Bse118I	RCCGGY	3 cut(s)	285, 319, 429
Bse1I	ACTGG	2 cut(s)	279, 299
Bse8I	GATNNNNATC	2 cut(s)	308, 677
BseBI	CCWGG	3 cut(s)	118, 356, 802
BseDI	CCNNGG	3 cut(s)	355, 416, 800
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	2 cut(s)	308, 677
BseLI	CCNNNNNNNGG	8 cut(s)	285, 305, 319, 326, 347, 361, 375, 382
BseMII	CTCAG	1 cut(s)	745
BseNI	ACTGG	2 cut(s)	279, 299
BseRI	GAGGAG	2 cut(s)	584, 609
BseSI	GKGCMC	1 cut(s)	723
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	22, 615
Bsh1236I	CGCG	4 cut(s)	652, 739, 749, 793
Bsh1285I	CGRYCG	3 cut(s)	290, 320, 341
BshFI	GGCC	5 cut(s)	100, 285, 289, 421, 511
BshNI	GGYRCC	4 cut(s)	220, 713, 720, 815
BshTI	ACCGGT	2 cut(s)	319, 429
BsiEI	CGRYCG	3 cut(s)	290, 320, 341
BslI	CCNNNNNNNGG	8 cut(s)	285, 305, 319, 326, 347, 361, 375, 382
BsmAI	GTCTC	2 cut(s)	509, 842
BsnI	GGCC	5 cut(s)	100, 285, 289, 421, 511
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	484, 723
Bsp143I	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
Bsp68I	TCGCGA	2 cut(s)	739, 793
BspACI	CCGC	8 cut(s)	290, 422, 518, 605, 631, 652, 747, 771
BspANI	GGCC	5 cut(s)	100, 285, 289, 421, 511
BspCNI	CTCAG	1 cut(s)	744
BspFNI	CGCG	4 cut(s)	652, 739, 749, 793
BspLI	GGNNCC	5 cut(s)	222, 483, 715, 722, 817
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	4 cut(s)	220, 713, 720, 815
BsrFI	RCCGGY	3 cut(s)	285, 319, 429
BsrI	ACTGG	2 cut(s)	279, 299
BssAI	RCCGGY	3 cut(s)	285, 319, 429
BssECI	CCNNGG	3 cut(s)	355, 416, 800
BssMI	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	118, 356, 802
Bst4CI	ACNGT	3 cut(s)	61, 93, 364
BstACI	GRCGYC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	287, 712, 832
BstDEI	CTNAG	3 cut(s)	20, 554, 731
BstEII	GGTNACC	3 cut(s)	274, 322, 364
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	4 cut(s)	652, 739, 749, 793
BstH2I	RGCGCY	3 cut(s)	581, 613, 717
BstHHI	GCGC	4 cut(s)	580, 612, 716, 751
BstKTI	GATC	6 cut(s)	54, 86, 478, 565, 675, 730
BstMAI	GTCTC	2 cut(s)	509, 842
BstMBI	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
BstMCI	CGRYCG	3 cut(s)	290, 320, 341
BstMWI	GCNNNNNNNGC	3 cut(s)	517, 526, 628
BstNI	CCWGG	3 cut(s)	118, 356, 802
BstPI	GGTNACC	3 cut(s)	274, 322, 364
BstSCI	CCNGG	4 cut(s)	116, 354, 716, 800
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	4 cut(s)	652, 739, 749, 793
BstV1I	GCAGC	2 cut(s)	22, 615
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	83, 727
BstYI	RGATCY	2 cut(s)	83, 727
BstZI	CGGCCG	1 cut(s)	287
BsuRI	GGCC	5 cut(s)	100, 285, 289, 421, 511
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	286, 306
BtuMI	TCGCGA	2 cut(s)	739, 793
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	287, 712, 832
CaiI	CAGNNNCTG	2 cut(s)	44, 628
CfoI	GCGC	4 cut(s)	580, 612, 716, 751
Cfr10I	RCCGGY	3 cut(s)	285, 319, 429
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	634, 658
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	2 cut(s)	319, 429
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	3 cut(s)	217, 498, 707
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	20, 554, 731
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	6 cut(s)	53, 85, 477, 564, 674, 729
DpnII	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
EaeI	YGGCCR	3 cut(s)	283, 287, 419
EagI	CGGCCG	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	620
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	287
Eco91I	GGTNACC	3 cut(s)	274, 322, 364
EcoO109I	RGGNCCY	1 cut(s)	41
EcoO65I	GGTNACC	3 cut(s)	274, 322, 364
EcoRII	CCWGG	3 cut(s)	116, 354, 800
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	484
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	220, 501, 710
FaiI	YATR	4 cut(s)	160, 218, 499, 708
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	3 cut(s)	216, 497, 706
FauI	CCCGC	1 cut(s)	645
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	36, 290, 422, 629, 747, 771
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	484
FseI	GGCCGGCC	1 cut(s)	289
Fsp4HI	GCNGC	6 cut(s)	36, 290, 422, 629, 747, 771
FspBI	CTAG	8 cut(s)	12, 80, 87, 96, 210, 566, 591, 785
GlaI	GCGC	4 cut(s)	579, 611, 715, 750
GluI	GCNGC	6 cut(s)	36, 290, 422, 629, 747, 771
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	3 cut(s)	581, 613, 717
HaeIII	GGCC	5 cut(s)	100, 285, 289, 421, 511
HgaI	GACGC	2 cut(s)	634, 658
HhaI	GCGC	4 cut(s)	580, 612, 716, 751
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	3 cut(s)	220, 501, 710
Hin6I	GCGC	4 cut(s)	578, 610, 714, 749
HinP1I	GCGC	4 cut(s)	578, 610, 714, 749
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HphI	GGTGA	5 cut(s)	286, 334, 358, 673, 695
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	56, 639, 672
Hpy188III	TCNNGA	5 cut(s)	87, 566, 591, 738, 792
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	4 cut(s)	408, 463, 466, 652
HpyAV	CCTTC	2 cut(s)	165, 680
HpyCH4III	ACNGT	3 cut(s)	61, 93, 364
HpyCH4IV	ACGT	2 cut(s)	406, 458
HpyCH4V	TGCA	4 cut(s)	38, 264, 390, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	517, 526, 628
HpyF3I	CTNAG	3 cut(s)	20, 554, 731
HpySE526I	ACGT	2 cut(s)	406, 458
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	220, 501, 710
HspAI	GCGC	4 cut(s)	578, 610, 714, 749
KasI	GGCGCC	1 cut(s)	713
KroI	GCCGGC	1 cut(s)	285
KroNI	GCCGGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
LmnI	GCTCC	4 cut(s)	133, 487, 575, 607
Lsp1109I	GCAGC	2 cut(s)	22, 615
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	8 cut(s)	12, 80, 87, 96, 210, 566, 591, 785
MaeII	ACGT	2 cut(s)	406, 458
MaeIII	GTNAC	3 cut(s)	274, 322, 364
MalI	GATC	6 cut(s)	53, 85, 477, 564, 674, 729
MboI	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
MboII	GAAGA	1 cut(s)	426
MflI	RGATCY	2 cut(s)	83, 727
MhlI	GDGCHC	2 cut(s)	484, 723
MluCI	AATT	5 cut(s)	106, 191, 234, 392, 824
Mly113I	GGCGCC	1 cut(s)	714
MlyI	GAGTC	3 cut(s)	13, 735, 789
MroNI	GCCGGC	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	154
MspA1I	CMGCKG	2 cut(s)	227, 812
MspR9I	CCNGG	4 cut(s)	118, 356, 718, 802
MvaI	CCWGG	3 cut(s)	118, 356, 802
MvnI	CGCG	4 cut(s)	652, 739, 749, 793
MwoI	GCNNNNNNNGC	3 cut(s)	517, 526, 628
NaeI	GCCGGC	1 cut(s)	287
NarI	GGCGCC	1 cut(s)	714
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
NgoMIV	GCCGGC	1 cut(s)	285
NlaIII	CATG	3 cut(s)	220, 501, 710
NlaIV	GGNNCC	5 cut(s)	222, 483, 715, 722, 817
NmuCI	GTSAC	3 cut(s)	274, 322, 364
NruI	TCGCGA	2 cut(s)	739, 793
NspV	TTCGAA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	656
PdiI	GCCGGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	7 cut(s)	150, 309, 330, 351, 372, 541, 634
PinAI	ACCGGT	2 cut(s)	319, 429
PkrI	GCNGC	6 cut(s)	37, 291, 423, 630, 748, 772
PleI	GAGTC	3 cut(s)	12, 735, 789
PluTI	GGCGCC	1 cut(s)	717
PpsI	GAGTC	3 cut(s)	12, 735, 789
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	3 cut(s)	116, 354, 800
PspEI	GGTNACC	3 cut(s)	274, 322, 364
PspGI	CCWGG	3 cut(s)	116, 354, 800
PspN4I	GGNNCC	5 cut(s)	222, 483, 715, 722, 817
PspPI	GGNCC	1 cut(s)	41
PspPPI	RGGWCCY	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	44, 628
PsuI	RGATCY	2 cut(s)	83, 727
PvuII	CAGCTG	2 cut(s)	227, 812
RigI	GGCCGGCC	1 cut(s)	289
RruI	TCGCGA	2 cut(s)	739, 793
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SatI	GCNGC	6 cut(s)	36, 290, 422, 629, 747, 771
Sau3AI	GATC	6 cut(s)	51, 83, 475, 562, 672, 727
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	13, 735, 789
ScrFI	CCNGG	4 cut(s)	118, 356, 718, 802
SduI	GDGCHC	2 cut(s)	484, 723
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	715
SfuI	TTCGAA	1 cut(s)	232
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	5 cut(s)	106, 191, 234, 392, 824
SsiI	CCGC	8 cut(s)	290, 422, 518, 605, 631, 652, 747, 771
SspDI	GGCGCC	1 cut(s)	713
SspMI	CTAG	8 cut(s)	12, 80, 87, 96, 210, 566, 591, 785
StyD4I	CCNGG	4 cut(s)	116, 354, 716, 800
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	61, 93, 364
TaiI	ACGT	2 cut(s)	409, 461
TaqI	TCGA	3 cut(s)	232, 647, 659
TaqII	GACCGA	2 cut(s)	82, 355
TasI	AATT	5 cut(s)	106, 191, 234, 392, 824
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	4 cut(s)	292, 424, 749, 773
TfiI	GAWTC	7 cut(s)	150, 309, 330, 351, 372, 541, 634
TscAI	CASTG	2 cut(s)	286, 306
TseFI	GTSAC	3 cut(s)	274, 322, 364
TseI	GCWGC	2 cut(s)	35, 628
Tsp45I	GTSAC	3 cut(s)	274, 322, 364
TspDTI	ATGAA	3 cut(s)	147, 205, 399
TspRI	CASTG	2 cut(s)	286, 306
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	3 cut(s)	106, 191, 392
XbaI	TCTAGA	3 cut(s)	86, 565, 590
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	8 cut(s)	12, 80, 87, 96, 210, 566, 591, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.