RLG00000006117

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011570
Physical Location & Seq
Reverse (-)
4501958 .. 4504900
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006117

Sequence Viewer

Length: 747 bp
ATGGTAGTGCAGGAAGATGGTGGTGCTAGGTTTGGGTCTGCGGATCGAGCGATGGGGTTCAGTTTCAGATCCGGTGACGGTAGGGAGAAAGGGGGCTGTTTTGGAGGCGGAGAGGCCGTGGATCTGCTGTGGTTCATTGACGGCGATGTCGGCTCTTTGTTCGGGGATCGGAAGGCTAGCGGCAAAGAGCCGAGCAAATTTCCAGCACGGCGTTCATTCCCTTGGCCGCCACACCGGTCTTCCAACCAAACTCAATGGTCAACGTCGTCGGGGGCTTGTGATCGGGCACCCAGAGACACGCCATGTAGTCTCCGGCCTCCACCACCTAAAAAGCAAACTGACCCGATTCCACAAGCTCCGAGTAGTGATCTGAACCTTCGCCGGTGGTCAGCGACTGCAAGCGGTAGACGGTGGTCTGAGAGACGGCGGCAGGGGGCTCGTCGCCGGCGTGAGGGAATCCGGGGGGGAGAGGAGGAGCGCCGATTGGGTCTAGAGGAGGGAGGGCGGAGCGCCATAGAGAGCAGACGCTGCAGAATCAGAGAATGTCGACGCAGGTTTCGAGGAATTTTCCAATCTCAATCACCGAAGGTTCTTACCTTTCTCACCATGCAGGCGCCGGGCACCAAGATCTCAGTTCTCGACTCGCCGCGCAGACCTCTAGTGTTGTCGCCGCACTTTCCAATCTCGGTTCGCGACTCCCCGGGCAGTCAGCCGGTGCCGGAGAATTGGCTTGCGATAGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.68

Weight (kDa)

11.14

Isoelectric Point (pI)

97.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 543
AccB1I GGYRCC 4 cut(s) 286, 613, 620, 715
AccI GTMKAC 2 cut(s) 406, 547
AccII CGCG 2 cut(s) 649, 693
AciI CCGC 9 cut(s) 41, 108, 180, 227, 402, 427, 505, 647, 671
AclWI GGATC 4 cut(s) 51, 63, 129, 174
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 197, 564
AcyI GRCGYC 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 451
AgeI ACCGGT 1 cut(s) 234
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 3 cut(s) 288, 314, 415
AlwI GGATC 4 cut(s) 51, 63, 129, 174
AlwNI CAGNNNCTG 2 cut(s) 395, 528
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 3 cut(s) 114, 224, 314
ApeKI GCWGC 1 cut(s) 528
ApoI RAATTY 2 cut(s) 197, 564
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
AsiGI ACCGGT 1 cut(s) 234
AspLEI GCGC 4 cut(s) 480, 512, 616, 651
AsuC2I CCSGG 4 cut(s) 461, 618, 701, 702
AsuHPI GGTGA 3 cut(s) 86, 573, 595
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 700
BaeGI GKGCMC 2 cut(s) 289, 623
BanI GGYRCC 4 cut(s) 286, 613, 620, 715
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 515
BccI CCATC 2 cut(s) 11, 46
BceAI ACGGC 4 cut(s) 101, 157, 224, 440
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BcnI CCSGG 4 cut(s) 461, 618, 701, 702
BcoDI GTCTC 3 cut(s) 288, 314, 415
BfaI CTAG 4 cut(s) 27, 177, 491, 659
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 3 cut(s) 481, 513, 617
BfuAI ACCTGC 1 cut(s) 543
BglII AGATCT 1 cut(s) 627
BisI GCNGC 6 cut(s) 181, 227, 428, 529, 647, 671
BlsI GCNGC 6 cut(s) 182, 228, 429, 530, 648, 672
Bme1390I CCNGG 4 cut(s) 461, 618, 701, 702
BmeT110I CYCGRG 1 cut(s) 700
BmiI GGNNCC 4 cut(s) 288, 615, 622, 717
BmrFI CCNGG 4 cut(s) 461, 618, 701, 702
BmtI GCTAGC 1 cut(s) 180
BoxI GACNNNNGTC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 231
BpuMI CCSGG 4 cut(s) 461, 618, 701, 702
BsaHI GRCGYC 1 cut(s) 614
BsaJI CCNNGG 5 cut(s) 117, 221, 460, 699, 700
BsaWI WCCGGW 2 cut(s) 71, 234
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 4 cut(s) 234, 381, 444, 712
BseDI CCNNGG 5 cut(s) 117, 221, 460, 699, 700
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 408, 645
BseRI GAGGAG 3 cut(s) 485, 488, 509
BseSI GKGCMC 2 cut(s) 289, 623
BseXI GCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 2 cut(s) 649, 693
BshFI GGCC 3 cut(s) 116, 226, 316
BshNI GGYRCC 4 cut(s) 286, 613, 620, 715
BshTI ACCGGT 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 700
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 3 cut(s) 288, 314, 415
BsmBI CGTCTC 1 cut(s) 415
BsnI GGCC 3 cut(s) 116, 226, 316
BsoBI CYCGRG 1 cut(s) 700
Bsp1286I GDGCHC 3 cut(s) 289, 439, 623
Bsp143I GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
Bsp68I TCGCGA 1 cut(s) 693
BspACI CCGC 9 cut(s) 41, 108, 180, 227, 402, 427, 505, 647, 671
BspANI GGCC 3 cut(s) 116, 226, 316
BspCNI CTCAG 2 cut(s) 409, 644
BspFNI CGCG 2 cut(s) 649, 693
BspLI GGNNCC 4 cut(s) 288, 615, 622, 717
BspMAI CTGCAG 1 cut(s) 533
BspMI ACCTGC 1 cut(s) 543
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 4 cut(s) 51, 63, 129, 174
BspT107I GGYRCC 4 cut(s) 286, 613, 620, 715
BsrFI RCCGGY 4 cut(s) 234, 381, 444, 712
BssAI RCCGGY 4 cut(s) 234, 381, 444, 712
BssECI CCNNGG 5 cut(s) 117, 221, 460, 699, 700
BssMI GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
BssNI GRCGYC 1 cut(s) 614
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 80, 411
BstACI GRCGYC 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 528
BstC8I GCNNGC 5 cut(s) 178, 400, 446, 612, 732
BstDEI CTNAG 2 cut(s) 417, 631
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 2 cut(s) 649, 693
BstH2I RGCGCY 3 cut(s) 481, 513, 617
BstHHI GCGC 4 cut(s) 480, 512, 616, 651
BstKTI GATC 7 cut(s) 46, 71, 124, 169, 283, 370, 630
BstMAI GTCTC 3 cut(s) 288, 314, 415
BstMBI GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
BstMWI GCNNNNNNNGC 3 cut(s) 47, 150, 528
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 459, 616, 699, 700
BstSFI CTRYAG 1 cut(s) 529
BstSLI GKGCMC 2 cut(s) 289, 623
BstUI CGCG 2 cut(s) 649, 693
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 3 cut(s) 68, 121, 627
BstYI RGATCY 3 cut(s) 68, 121, 627
BsuRI GGCC 3 cut(s) 116, 226, 316
BtgI CCRYGG 1 cut(s) 117
BtgZI GCGATG 2 cut(s) 65, 159
BtuMI TCGCGA 1 cut(s) 693
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 5 cut(s) 178, 400, 446, 612, 732
CaiI CAGNNNCTG 2 cut(s) 395, 528
CfoI GCGC 4 cut(s) 480, 512, 616, 651
Cfr10I RCCGGY 4 cut(s) 234, 381, 444, 712
Cfr9I CCCGGG 1 cut(s) 700
CseI GACGC 2 cut(s) 534, 558
CspAI ACCGGT 1 cut(s) 234
CviAII CATG 2 cut(s) 303, 607
DdeI CTNAG 2 cut(s) 417, 631
DinI GGCGCC 1 cut(s) 615
DpnI GATC 7 cut(s) 45, 70, 123, 168, 282, 369, 629
DpnII GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 224
EciI GGCGGA 2 cut(s) 123, 520
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 439
EgeI GGCGCC 1 cut(s) 615
EheI GGCGCC 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 2 cut(s) 306, 610
FaiI YATR 3 cut(s) 304, 515, 608
FatI CATG 2 cut(s) 302, 606
FblI GTMKAC 2 cut(s) 406, 547
Fnu4HI GCNGC 6 cut(s) 181, 227, 428, 529, 647, 671
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 6 cut(s) 181, 227, 428, 529, 647, 671
FspBI CTAG 4 cut(s) 27, 177, 491, 659
GlaI GCGC 4 cut(s) 479, 511, 615, 650
GluI GCNGC 6 cut(s) 181, 227, 428, 529, 647, 671
HaeII RGCGCY 3 cut(s) 481, 513, 617
HaeIII GGCC 3 cut(s) 116, 226, 316
HgaI GACGC 2 cut(s) 534, 558
HhaI GCGC 4 cut(s) 480, 512, 616, 651
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 2 cut(s) 306, 610
Hin6I GCGC 4 cut(s) 478, 510, 614, 649
HinP1I GCGC 4 cut(s) 478, 510, 614, 649
HincII GTYRAC 2 cut(s) 261, 548
HindII GTYRAC 2 cut(s) 261, 548
HinfI GANTC 5 cut(s) 346, 456, 534, 641, 695
HphI GGTGA 3 cut(s) 86, 573, 595
Hpy166II GTNNAC 3 cut(s) 261, 407, 548
Hpy188I TCNGA 6 cut(s) 68, 171, 360, 372, 418, 539
Hpy188III TCNNGA 3 cut(s) 491, 638, 692
Hpy8I GTNNAC 3 cut(s) 261, 407, 548
Hpy99I CGWCG 4 cut(s) 268, 271, 444, 552
HpyAV CCTTC 3 cut(s) 166, 386, 580
HpyCH4III ACNGT 2 cut(s) 80, 411
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 4 cut(s) 10, 398, 531, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 150, 528
HpyF3I CTNAG 2 cut(s) 417, 631
HpySE526I ACGT 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 2 cut(s) 306, 610
HspAI GCGC 4 cut(s) 478, 510, 614, 649
KasI GGCGCC 1 cut(s) 613
KroI GCCGGC 1 cut(s) 444
KroNI GCCGGC 1 cut(s) 446
Kzo9I GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
LmnI GCTCC 3 cut(s) 361, 475, 507
Lsp1109I GCAGC 1 cut(s) 515
MaeI CTAG 4 cut(s) 27, 177, 491, 659
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 74
MalI GATC 7 cut(s) 45, 70, 123, 168, 282, 369, 629
MboI GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
MboII GAAGA 2 cut(s) 26, 231
MflI RGATCY 3 cut(s) 68, 121, 627
MhlI GDGCHC 3 cut(s) 289, 439, 623
MluCI AATT 3 cut(s) 197, 564, 724
Mly113I GGCGCC 1 cut(s) 614
MlyI GAGTC 2 cut(s) 635, 689
MmeI TCCRAC 1 cut(s) 267
MreI CGCCGGCG 1 cut(s) 444
MroNI GCCGGC 1 cut(s) 444
MspR9I CCNGG 4 cut(s) 461, 618, 701, 702
MvnI CGCG 2 cut(s) 649, 693
MwoI GCNNNNNNNGC 3 cut(s) 47, 150, 528
NaeI GCCGGC 1 cut(s) 446
NarI GGCGCC 1 cut(s) 614
NciI CCSGG 4 cut(s) 461, 618, 701, 702
NdeII GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
NgoMIV GCCGGC 1 cut(s) 444
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 306, 610
NlaIV GGNNCC 4 cut(s) 288, 615, 622, 717
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 74
NruI TCGCGA 1 cut(s) 693
PcsI WCGNNNNNNNCGW 2 cut(s) 445, 556
PdiI GCCGGC 1 cut(s) 446
PfeI GAWTC 3 cut(s) 346, 456, 534
PinAI ACCGGT 1 cut(s) 234
PkrI GCNGC 6 cut(s) 182, 228, 429, 530, 648, 672
PleI GAGTC 2 cut(s) 635, 689
PluTI GGCGCC 1 cut(s) 617
PpsI GAGTC 2 cut(s) 635, 689
PshAI GACNNNNGTC 1 cut(s) 412
PspN4I GGNNCC 4 cut(s) 288, 615, 622, 717
PstI CTGCAG 1 cut(s) 533
PstNI CAGNNNCTG 2 cut(s) 395, 528
PsuI RGATCY 3 cut(s) 68, 121, 627
RruI TCGCGA 1 cut(s) 693
SalI GTCGAC 1 cut(s) 546
SatI GCNGC 6 cut(s) 181, 227, 428, 529, 647, 671
Sau3AI GATC 7 cut(s) 43, 68, 121, 166, 280, 367, 627
SchI GAGTC 2 cut(s) 635, 689
ScrFI CCNGG 4 cut(s) 461, 618, 701, 702
SduI GDGCHC 3 cut(s) 289, 439, 623
SetI ASST 9 cut(s) 32, 266, 328, 358, 378, 557, 591, 599, 658
SfcI CTRYAG 1 cut(s) 529
SfoI GGCGCC 1 cut(s) 615
SgrAI CRCCGGYG 2 cut(s) 381, 444
SmaI CCCGGG 1 cut(s) 702
Sse9I AATT 3 cut(s) 197, 564, 724
SsiI CCGC 9 cut(s) 41, 108, 180, 227, 402, 427, 505, 647, 671
SspDI GGCGCC 1 cut(s) 613
SspMI CTAG 4 cut(s) 27, 177, 491, 659
StyD4I CCNGG 4 cut(s) 459, 616, 699, 700
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 80, 411
TaiI ACGT 1 cut(s) 266
TaqI TCGA 4 cut(s) 46, 547, 559, 639
TasI AATT 3 cut(s) 197, 564, 724
TauI GCSGC 5 cut(s) 183, 229, 430, 649, 673
TfiI GAWTC 3 cut(s) 346, 456, 534
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 528
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 124, 204
TspMI CCCGGG 1 cut(s) 700
XapI RAATTY 2 cut(s) 197, 564
XbaI TCTAGA 1 cut(s) 490
XmaI CCCGGG 1 cut(s) 700
XmiI GTMKAC 2 cut(s) 406, 547
XspI CTAG 4 cut(s) 27, 177, 491, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.