Rorug02G0642000

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011570
Physical Location & Seq
Reverse (-)
75404688 .. 75405119
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0642000.1

Sequence Viewer

Length: 432 bp
ATGCTAGGAAGAGATTACAGGTTTGGAAATGCCTTTATGGAATCAACATTGGGAATCAGCAGTCCTGACCTGCTGAAAGATATAATGTATTGTAAAGATGTTCTTCTTAATGTGGGATTGGTCACAAAAGCTAGGCTACTGTCTAACATAGTTATGTTGGATAAGAAGATGAGGGAGCAGTTTGTACAATTGATACTAAACAATATGTCAACTCTGGCAGGGAAGCAGGTTGCTGTATTTGGGGTCACGTACAAGAGCAACATGGCAGATCTCACAAATTCACCTGCAGTGAGTCTATGTAAAGCACTTCAGAAGGAAGGTACCATCCTTCGAATTTATGATCCACTGAGAAATGGAAATGAAATCTTGAATTATTTATGTAATCGTGTAAGGGTAGGAGTAGTTGCTGATCTAGGTAGGAGTACTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

143

Amino Acids

15.91

Weight (kDa)

9.4

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_C PF03720 78 - 124 1.2e-09 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 3 cut(s) 78, 217, 292
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 277, 333
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 4 cut(s) 186, 251, 322, 424
AgsI TTSAA 1 cut(s) 370
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AlwI GGATC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 277, 333
Asp718I GGTACC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 331
BanI GGYRCC 1 cut(s) 320
BccI CCATC 1 cut(s) 332
BfaI CTAG 3 cut(s) 5, 132, 413
BfmI CTRYAG 1 cut(s) 285
BfuAI ACCTGC 3 cut(s) 78, 217, 292
BglII AGATCT 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 249
BseGI GGATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 268, 340, 409
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 289
BspMI ACCTGC 3 cut(s) 78, 217, 292
BspPI GGATC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 184
BssMI GATC 3 cut(s) 268, 340, 409
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 4
BstAUI TGTACA 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 3 cut(s) 271, 343, 412
BstMBI GATC 3 cut(s) 268, 340, 409
BstSFI CTRYAG 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 294, 344
BveI ACCTGC 3 cut(s) 78, 217, 292
Csp6I GTAC 4 cut(s) 185, 250, 321, 423
CviAII CATG 1 cut(s) 262
CviJI RGCY 2 cut(s) 131, 136
CviKI_1 RGCY 2 cut(s) 131, 136
CviQI GTAC 4 cut(s) 185, 250, 321, 423
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 270, 342, 411
DpnII GATC 3 cut(s) 268, 340, 409
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 293
FaeI CATG 1 cut(s) 265
FaiI YATR 9 cut(s) 38, 83, 149, 155, 206, 263, 298, 339, 379
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 1 cut(s) 261
FokI GGATG 1 cut(s) 311
FspBI CTAG 3 cut(s) 5, 132, 413
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 3 cut(s) 41, 54, 292
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 65, 367
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 3 cut(s) 307, 311, 338
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 1 cut(s) 265
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 268, 340, 409
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 4, 78, 83, 200, 204, 212, 297
MaeI CTAG 3 cut(s) 5, 132, 413
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 121, 244
MalI GATC 3 cut(s) 270, 342, 411
MboI GATC 3 cut(s) 268, 340, 409
MboII GAAGA 3 cut(s) 21, 95, 178
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 268
MluCI AATT 4 cut(s) 188, 277, 333, 370
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 165
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 152
MunI CAATTG 1 cut(s) 188
NdeII GATC 3 cut(s) 268, 340, 409
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 121, 244
NspV TTCGAA 1 cut(s) 331
PaqCI CACCTGC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 41, 54
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Ppu21I YACGTR 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 4 cut(s) 186, 251, 322, 424
RsaNI GTAC 4 cut(s) 185, 250, 321, 423
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 3 cut(s) 268, 340, 409
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 301
SetI ASST 8 cut(s) 23, 72, 133, 231, 251, 286, 322, 418
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 4 cut(s) 188, 277, 333, 370
SspMI CTAG 3 cut(s) 5, 132, 413
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 188, 277, 333, 370
TatI WGTACW 2 cut(s) 184, 422
TfiI GAWTC 2 cut(s) 41, 54
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 294, 351
TseFI GTSAC 2 cut(s) 121, 244
Tsp45I GTSAC 2 cut(s) 121, 244
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 2 cut(s) 294, 351
XapI RAATTY 2 cut(s) 277, 333
XspI CTAG 3 cut(s) 5, 132, 413
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.