Double-stranded RNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04080 FvH4_6g04080 FvH4_6g04080 |
| malus_domestica | MD04G1216700.v1.1 MD12G1233300.v1.1 |
| prunus_persica | Prupe.6G336400_v2.0.a1 |
| pyrus_communis | pycom04g19270 pycom12g21580 |
| rosa_chinensis | RchiOBHm_Chr3g0452631 |
| rosa_laevigata | RLG00000006117 RLG00000025860 |
| rosa_multiflora | Rmu_sc0030581.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00429670 |
| rosa_rugosa | Rorug02G0642000 Rorug02G0642100 |
| rosa_samantha | Rh3AG044400 Rh3BG046700 Rh3CG045200 Rh3DG045600 |
| rosa_wichuraiana | Rw3G003460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1468 |
| AciI | CCGC | 1 cut(s) | 1096 |
| AclWI | GGATC | 5 cut(s) | 392, 405, 563, 1283, 1339 |
| AcsI | RAATTY | 4 cut(s) | 385, 893, 1354, 1439 |
| AcuI | CTGAAG | 2 cut(s) | 260, 1130 |
| AfaI | GTAC | 5 cut(s) | 364, 1022, 1066, 1296, 1497 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 679, 763, 959, 1150 |
| AjnI | CCWGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1065, 1097 |
| Alw26I | GTCTC | 2 cut(s) | 275, 1541 |
| AlwI | GGATC | 5 cut(s) | 392, 405, 563, 1283, 1339 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1292 |
| AoxI | GGCC | 2 cut(s) | 340, 913 |
| ApeKI | GCWGC | 8 cut(s) | 176, 179, 233, 434, 443, 627, 727, 1283 |
| ApoI | RAATTY | 4 cut(s) | 385, 893, 1354, 1439 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 93, 125 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1143, 1402 |
| AspLEI | GCGC | 2 cut(s) | 561, 769 |
| AspS9I | GGNCC | 6 cut(s) | 77, 215, 335, 887, 914, 1194 |
| AsuHPI | GGTGA | 2 cut(s) | 824, 833 |
| AsuII | TTCGAA | 1 cut(s) | 1480 |
| AvaII | GGWCC | 5 cut(s) | 77, 215, 335, 887, 1194 |
| BamHI | GGATCC | 1 cut(s) | 397 |
| BanI | GGYRCC | 1 cut(s) | 1468 |
| BbvI | GCAGC | 8 cut(s) | 163, 191, 220, 421, 430, 639, 739, 1270 |
| BccI | CCATC | 8 cut(s) | 571, 629, 799, 852, 865, 925, 1036, 1285 |
| BceAI | ACGGC | 1 cut(s) | 721 |
| BciT130I | CCWGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| BciVI | GTATCC | 1 cut(s) | 605 |
| BclI | TGATCA | 1 cut(s) | 1299 |
| BcoDI | GTCTC | 2 cut(s) | 275, 1541 |
| BfaI | CTAG | 8 cut(s) | 405, 707, 1206, 1260, 1328, 1335, 1344, 1458 |
| BfmI | CTRYAG | 5 cut(s) | 177, 625, 743, 1032, 1284 |
| BfoI | RGCGCY | 1 cut(s) | 770 |
| BfuI | GTATCC | 1 cut(s) | 605 |
| BisI | GCNGC | 8 cut(s) | 177, 180, 234, 435, 444, 628, 728, 1284 |
| BlsI | GCNGC | 8 cut(s) | 178, 181, 235, 436, 445, 629, 729, 1285 |
| BmcAI | AGTACT | 1 cut(s) | 1022 |
| Bme1390I | CCNGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| Bme18I | GGWCC | 5 cut(s) | 77, 215, 335, 887, 1194 |
| BmgT120I | GGNCC | 6 cut(s) | 77, 215, 335, 887, 914, 1194 |
| BmiI | GGNNCC | 5 cut(s) | 399, 945, 1160, 1195, 1470 |
| BmrFI | CCNGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| BmrI | ACTGGG | 2 cut(s) | 688, 1176 |
| BmsI | GCATC | 2 cut(s) | 75, 654 |
| BmuI | ACTGGG | 2 cut(s) | 688, 1176 |
| BpmI | CTGGAG | 1 cut(s) | 276 |
| Bpu14I | TTCGAA | 1 cut(s) | 1480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 843 |
| BsaJI | CCNNGG | 4 cut(s) | 505, 1189, 1190, 1197 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 679, 763, 959, 1150 |
| Bse118I | RCCGGY | 1 cut(s) | 1216 |
| Bse1I | ACTGG | 7 cut(s) | 259, 471, 683, 1040, 1171, 1499, 1581 |
| Bse8I | GATNNNNATC | 1 cut(s) | 843 |
| BseBI | CCWGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| BseDI | CCNNGG | 4 cut(s) | 505, 1189, 1190, 1197 |
| BseGI | GGATG | 3 cut(s) | 253, 791, 1105 |
| BseJI | GATNNNNATC | 1 cut(s) | 843 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 679, 763, 959, 1150 |
| BseMII | CTCAG | 3 cut(s) | 44, 437, 1008 |
| BseNI | ACTGG | 7 cut(s) | 259, 471, 683, 1040, 1171, 1499, 1581 |
| BseXI | GCAGC | 8 cut(s) | 163, 191, 220, 421, 430, 639, 739, 1270 |
| BshFI | GGCC | 2 cut(s) | 342, 915 |
| BshNI | GGYRCC | 1 cut(s) | 1468 |
| BsiSI | CCGG | 1 cut(s) | 1217 |
| BslFI | GGGAC | 2 cut(s) | 487, 1207 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 679, 763, 959, 1150 |
| BsmAI | GTCTC | 2 cut(s) | 275, 1541 |
| BsmFI | GGGAC | 2 cut(s) | 487, 1207 |
| BsnI | GGCC | 2 cut(s) | 342, 915 |
| Bsp119I | TTCGAA | 1 cut(s) | 1480 |
| Bsp19I | CCATGG | 1 cut(s) | 1197 |
| BspACI | CCGC | 1 cut(s) | 1096 |
| BspANI | GGCC | 2 cut(s) | 342, 915 |
| BspCNI | CTCAG | 3 cut(s) | 43, 436, 1009 |
| BspLI | GGNNCC | 5 cut(s) | 399, 945, 1160, 1195, 1470 |
| BspMAI | CTGCAG | 3 cut(s) | 181, 629, 1288 |
| BspPI | GGATC | 5 cut(s) | 392, 405, 563, 1283, 1339 |
| BspT104I | TTCGAA | 1 cut(s) | 1480 |
| BspT107I | GGYRCC | 1 cut(s) | 1468 |
| BsrFI | RCCGGY | 1 cut(s) | 1216 |
| BsrI | ACTGG | 7 cut(s) | 259, 471, 683, 1040, 1171, 1499, 1581 |
| BssAI | RCCGGY | 1 cut(s) | 1216 |
| BssECI | CCNNGG | 4 cut(s) | 505, 1189, 1190, 1197 |
| BssT1I | CCWWGG | 2 cut(s) | 505, 1197 |
| Bst2UI | CCWGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| Bst4CI | ACNGT | 7 cut(s) | 109, 325, 367, 973, 1064, 1309, 1341 |
| Bst6I | CTCTTC | 1 cut(s) | 205 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 173, 233, 826 |
| BstBI | TTCGAA | 1 cut(s) | 1480 |
| BstC8I | GCNNGC | 1 cut(s) | 1529 |
| BstDEI | CTNAG | 7 cut(s) | 30, 158, 423, 573, 1017, 1076, 1268 |
| BstDSI | CCRYGG | 1 cut(s) | 1197 |
| BstEII | GGTNACC | 1 cut(s) | 1184 |
| BstF5I | GGATG | 3 cut(s) | 253, 791, 1105 |
| BstH2I | RGCGCY | 1 cut(s) | 770 |
| BstHHI | GCGC | 2 cut(s) | 561, 769 |
| BstMAI | GTCTC | 2 cut(s) | 275, 1541 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 173, 188, 233, 293, 440, 443, 733, 826, 1517 |
| BstNI | CCWGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| BstNSI | RCATGY | 2 cut(s) | 176, 1531 |
| BstPI | GGTNACC | 1 cut(s) | 1184 |
| BstSCI | CCNGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| BstSFI | CTRYAG | 5 cut(s) | 177, 625, 743, 1032, 1284 |
| BstV1I | GCAGC | 8 cut(s) | 163, 191, 220, 421, 430, 639, 739, 1270 |
| BstX2I | RGATCY | 3 cut(s) | 397, 1288, 1331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 229 |
| BstYI | RGATCY | 3 cut(s) | 397, 1288, 1331 |
| BsuI | GTATCC | 1 cut(s) | 605 |
| BsuRI | GGCC | 2 cut(s) | 342, 915 |
| BtgI | CCRYGG | 1 cut(s) | 1197 |
| BtsCI | GGATG | 3 cut(s) | 253, 791, 1105 |
| BtsIMutI | CAGTG | 1 cut(s) | 978 |
| Cac8I | GCNNGC | 1 cut(s) | 1529 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1292 |
| CfoI | GCGC | 2 cut(s) | 561, 769 |
| Cfr10I | RCCGGY | 1 cut(s) | 1216 |
| Cfr13I | GGNCC | 6 cut(s) | 77, 215, 335, 887, 914, 1194 |
| CsiI | ACCWGGT | 1 cut(s) | 1364 |
| Csp6I | GTAC | 5 cut(s) | 363, 1021, 1065, 1295, 1496 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1338, 1373 |
| CviQI | GTAC | 5 cut(s) | 363, 1021, 1065, 1295, 1496 |
| DdeI | CTNAG | 7 cut(s) | 30, 158, 423, 573, 1017, 1076, 1268 |
| Eam1104I | CTCTTC | 1 cut(s) | 205 |
| EarI | CTCTTC | 1 cut(s) | 205 |
| Eco130I | CCWWGG | 2 cut(s) | 505, 1197 |
| Eco47I | GGWCC | 5 cut(s) | 77, 215, 335, 887, 1194 |
| Eco57I | CTGAAG | 2 cut(s) | 260, 1130 |
| Eco91I | GGTNACC | 1 cut(s) | 1184 |
| EcoO109I | RGGNCCY | 1 cut(s) | 215 |
| EcoO65I | GGTNACC | 1 cut(s) | 1184 |
| EcoRII | CCWGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| EcoT14I | CCWWGG | 2 cut(s) | 505, 1197 |
| ErhI | CCWWGG | 2 cut(s) | 505, 1197 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 202, 234, 1303, 1335 |
| FaqI | GGGAC | 2 cut(s) | 487, 1207 |
| FauI | CCCGC | 1 cut(s) | 1089 |
| FbaI | TGATCA | 1 cut(s) | 1299 |
| Fnu4HI | GCNGC | 8 cut(s) | 177, 180, 234, 435, 444, 628, 728, 1284 |
| FokI | GGATG | 3 cut(s) | 260, 778, 1112 |
| Fsp4HI | GCNGC | 8 cut(s) | 177, 180, 234, 435, 444, 628, 728, 1284 |
| FspBI | CTAG | 8 cut(s) | 405, 707, 1206, 1260, 1328, 1335, 1344, 1458 |
| GlaI | GCGC | 2 cut(s) | 560, 768 |
| GluI | GCNGC | 8 cut(s) | 177, 180, 234, 435, 444, 628, 728, 1284 |
| GsuI | CTGGAG | 1 cut(s) | 276 |
| HaeII | RGCGCY | 1 cut(s) | 770 |
| HaeIII | GGCC | 2 cut(s) | 342, 915 |
| HapII | CCGG | 1 cut(s) | 1217 |
| HhaI | GCGC | 2 cut(s) | 561, 769 |
| Hin6I | GCGC | 2 cut(s) | 559, 767 |
| HinP1I | GCGC | 2 cut(s) | 559, 767 |
| HincII | GTYRAC | 3 cut(s) | 112, 876, 1586 |
| HindII | GTYRAC | 3 cut(s) | 112, 876, 1586 |
| HindIII | AAGCTT | 1 cut(s) | 1112 |
| HinfI | GANTC | 8 cut(s) | 96, 500, 1010, 1080, 1202, 1252, 1398, 1549 |
| HpaII | CCGG | 1 cut(s) | 1217 |
| HphI | GGTGA | 2 cut(s) | 824, 833 |
| Hpy166II | GTNNAC | 5 cut(s) | 112, 262, 876, 969, 1586 |
| Hpy188I | TCNGA | 9 cut(s) | 33, 426, 568, 663, 954, 1006, 1177, 1304, 1554 |
| Hpy188III | TCNNGA | 8 cut(s) | 80, 222, 278, 333, 861, 983, 1335, 1344 |
| Hpy8I | GTNNAC | 5 cut(s) | 112, 262, 876, 969, 1586 |
| HpyAV | CCTTC | 7 cut(s) | 68, 228, 317, 863, 1148, 1154, 1413 |
| HpyCH4III | ACNGT | 7 cut(s) | 109, 325, 367, 973, 1064, 1309, 1341 |
| HpyCH4IV | ACGT | 2 cut(s) | 345, 475 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 173, 188, 233, 293, 440, 443, 733, 826, 1517 |
| HpyF3I | CTNAG | 7 cut(s) | 30, 158, 423, 573, 1017, 1076, 1268 |
| HpySE526I | ACGT | 2 cut(s) | 345, 475 |
| HspAI | GCGC | 2 cut(s) | 559, 767 |
| Ksp22I | TGATCA | 1 cut(s) | 1299 |
| LmnI | GCTCC | 2 cut(s) | 1381, 1516 |
| Lsp1109I | GCAGC | 8 cut(s) | 163, 191, 220, 421, 430, 639, 739, 1270 |
| LweI | GCATC | 2 cut(s) | 75, 654 |
| MabI | ACCWGGT | 1 cut(s) | 1364 |
| MaeI | CTAG | 8 cut(s) | 405, 707, 1206, 1260, 1328, 1335, 1344, 1458 |
| MaeII | ACGT | 2 cut(s) | 345, 475 |
| MaeIII | GTNAC | 4 cut(s) | 738, 973, 1184, 1230 |
| MboII | GAAGA | 6 cut(s) | 222, 477, 527, 1007, 1019, 1582 |
| MfeI | CAATTG | 2 cut(s) | 14, 719 |
| MflI | RGATCY | 3 cut(s) | 397, 1288, 1331 |
| MlyI | GAGTC | 4 cut(s) | 509, 1089, 1261, 1543 |
| MmeI | TCCRAC | 1 cut(s) | 865 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1143, 1402 |
| MseI | TTAA | 1 cut(s) | 1609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1421 |
| MspA1I | CMGCKG | 4 cut(s) | 785, 1016, 1150, 1475 |
| MspI | CCGG | 1 cut(s) | 1217 |
| MspR9I | CCNGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| MunI | CAATTG | 2 cut(s) | 14, 719 |
| MvaI | CCWGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 173, 188, 233, 293, 440, 443, 733, 826, 1517 |
| NcoI | CCATGG | 1 cut(s) | 1197 |
| NlaIV | GGNNCC | 5 cut(s) | 399, 945, 1160, 1195, 1470 |
| NmuCI | GTSAC | 1 cut(s) | 973 |
| NspI | RCATGY | 2 cut(s) | 176, 1531 |
| NspV | TTCGAA | 1 cut(s) | 1480 |
| PaeI | GCATGC | 1 cut(s) | 1531 |
| PasI | CCCWGGG | 1 cut(s) | 1190 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1143, 1402 |
| PfeI | GAWTC | 4 cut(s) | 96, 1010, 1202, 1398 |
| PfoI | TCCNGGA | 1 cut(s) | 1083 |
| PkrI | GCNGC | 8 cut(s) | 178, 181, 235, 436, 445, 629, 729, 1285 |
| PleI | GAGTC | 4 cut(s) | 508, 1088, 1260, 1543 |
| PpsI | GAGTC | 4 cut(s) | 508, 1088, 1260, 1543 |
| PpuMI | RGGWCCY | 1 cut(s) | 215 |
| Psp5II | RGGWCCY | 1 cut(s) | 215 |
| Psp6I | CCWGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| PspEI | GGTNACC | 1 cut(s) | 1184 |
| PspGI | CCWGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| PspN4I | GGNNCC | 5 cut(s) | 399, 945, 1160, 1195, 1470 |
| PspPI | GGNCC | 6 cut(s) | 77, 215, 335, 887, 914, 1194 |
| PspPPI | RGGWCCY | 1 cut(s) | 215 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1026, 1058 |
| PstI | CTGCAG | 3 cut(s) | 181, 629, 1288 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1292 |
| PsuI | RGATCY | 3 cut(s) | 397, 1288, 1331 |
| PvuII | CAGCTG | 4 cut(s) | 785, 1016, 1150, 1475 |
| RsaI | GTAC | 5 cut(s) | 364, 1022, 1066, 1296, 1497 |
| RsaNI | GTAC | 5 cut(s) | 363, 1021, 1065, 1295, 1496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1421 |
| SaqAI | TTAA | 1 cut(s) | 1609 |
| SatI | GCNGC | 8 cut(s) | 177, 180, 234, 435, 444, 628, 728, 1284 |
| Sau96I | GGNCC | 6 cut(s) | 77, 215, 335, 887, 914, 1194 |
| ScaI | AGTACT | 1 cut(s) | 1022 |
| SchI | GAGTC | 4 cut(s) | 509, 1089, 1261, 1543 |
| ScrFI | CCNGG | 5 cut(s) | 339, 1085, 1191, 1366, 1544 |
| SexAI | ACCWGGT | 1 cut(s) | 1364 |
| SfaNI | GCATC | 2 cut(s) | 75, 654 |
| SfcI | CTRYAG | 5 cut(s) | 177, 625, 743, 1032, 1284 |
| SfuI | TTCGAA | 1 cut(s) | 1480 |
| SinI | GGWCC | 5 cut(s) | 77, 215, 335, 887, 1194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1421 |
| SphI | GCATGC | 1 cut(s) | 1531 |
| SsiI | CCGC | 1 cut(s) | 1096 |
| SspMI | CTAG | 8 cut(s) | 405, 707, 1206, 1260, 1328, 1335, 1344, 1458 |
| StyD4I | CCNGG | 5 cut(s) | 337, 1083, 1189, 1364, 1542 |
| StyI | CCWWGG | 2 cut(s) | 505, 1197 |
| TaaI | ACNGT | 7 cut(s) | 109, 325, 367, 973, 1064, 1309, 1341 |
| TaiI | ACGT | 2 cut(s) | 348, 478 |
| TaqI | TCGA | 5 cut(s) | 94, 328, 583, 1119, 1480 |
| TaqII | GACCGA | 2 cut(s) | 904, 1330 |
| TatI | WGTACW | 4 cut(s) | 362, 1020, 1064, 1294 |
| TfiI | GAWTC | 4 cut(s) | 96, 1010, 1202, 1398 |
| Tru1I | TTAA | 1 cut(s) | 1609 |
| Tru9I | TTAA | 1 cut(s) | 1609 |
| TscAI | CASTG | 1 cut(s) | 978 |
| TseFI | GTSAC | 1 cut(s) | 973 |
| TseI | GCWGC | 8 cut(s) | 176, 179, 233, 434, 443, 627, 727, 1283 |
| Tsp45I | GTSAC | 1 cut(s) | 973 |
| TspDTI | ATGAA | 4 cut(s) | 264, 398, 1395, 1453 |
| TspGWI | ACGGA | 1 cut(s) | 801 |
| TspRI | CASTG | 1 cut(s) | 978 |
| VpaK11BI | GGWCC | 5 cut(s) | 77, 215, 335, 887, 1194 |
| XapI | RAATTY | 4 cut(s) | 385, 893, 1354, 1439 |
| XbaI | TCTAGA | 2 cut(s) | 1334, 1343 |
| XceI | RCATGY | 2 cut(s) | 176, 1531 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1143, 1402 |
| XspI | CTAG | 8 cut(s) | 405, 707, 1206, 1260, 1328, 1335, 1344, 1458 |
| ZrmI | AGTACT | 1 cut(s) | 1022 |