Rroxscaffold_6G00429670

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
49900060 .. 49904112
4053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429670.1

Sequence Viewer

Length: 1611 bp
ATGTATAAGAACCAATTGCAAGAGTTGGCTCAGAGAAGTTGTTTCAATTTGCCCTCTTATTCGTGCATCAGGGAAGGTCCAGATCATGCCCCTCGATTCAAAGCAACTGTCAACTTCAATGGAGATACTTTTGAAAGTCCTACATTTTGCACTACCCTTAGACAAGCAGAACATGCTGCAGCAGAGGTAGCATTGAACACACTTGCAAGAAGAGGACCTTCCAGAGCATTGGCTGCAAGAGTATTGGATGAAACTGGAGTTTACAAGAACTTGCTTCAGGAGACTGCTCACAGAGCTGGTTTGAACCTTCCTGTTTATACTACTGTTCGATCTGGACCAGGCCACGTTCCTGTTTTCTCATGTACTGTTGAGCTTGGAGGAATGAATTTTATTGGGGATCCAGCTAGGACAAAGAAACAAGCTCAGAAAAATGCTGCCATAGCTGCTTGGACAACCCTGAAAAGACTGGCTCAACGTGATTTATCTTCTCCCTCAATGGAGTCCCAAGGCATTGAAGAACAGGAACAAGTCATTATTTCTCGTATTCTTGGACATTTGCGCCCATCTGATCCTAAGAACCCTCGAAATGATCGCAGACATGGACAACATGGATACACTCCCATCTGCAGCAATTCTACCCTGCCAACGCCAAGCCTATATCCGATGCAATTCCATGACTGGGCTTATTCTAATTATTCCCCTGAACTAGCCATGTATCAATTGTGGCAGCAAGAGCCGTTACTACAGCAACAAAACCGATTGTTGGCGCTTCCTGTTTTACCAGCTGTTCCATCCATTCCTCAAATATATCCGTTTATGCAATCCATGCTTCACCCAGATCACCATCTCTACTTTCCATCAAGAGAGGAAGGGTCAACCTCTGTTGGACCGAAATTTACAATCTCTACCTCTGGCCCATCATTCTGCTTCTCAAACCATTTGGTTCCTAATCCGATCAGGGGCAAGTCCACAGTGACTATTCAAGAGATACAGGAAGAAAAATCAGAAGAATCAGCTGAGTACTCTCCATCTGTAGTGCCAGTTCCCTTTGGTCTTGGAAACAGTACAACTGAACTAAGAGTCCAGGAACAAGTGCGGGATGACAAACAAAAGCTTGTCGAGTTGGGAAGCAGAATTGAAAACCTTCAGCTGGAAGGGAACCAAACTGGGCAATCTGAATGGGGTAACCCAGGGACCATGGATTCTAGTTTCAAGCCGGTGGATTTTGGGTTACAAAATCCTCCAAGAATGAGTCCTCCTAGAAGTCTTAGACCACCATCTGCTGCAGATCCTGTACTGATCAGAACTGTAAGACCGACTTCCTCACTAGGATCTAGACCGTCTAGACCACAGAATTTGCCAACCAGGTTTCCTGCTCCACCAAGAATGAGAGCTGGAATCCCTTCATATTCAGCCACACCCATGCTTCAAAGAATGGAATTTGGCAGACCAAGACCTAGCTTCATGGCACCAGCTGTTCGAATTAGGTCAGTTGTACCAGTTTGTTCAGCTCCACCAGCAAGAAGCATGCAAAGTTCCAGCCAGGAGACTCTGATACCCAACATGGAGAAGAAAGATACCAGTCAACACGACCTGTCAAAATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

59.52

Weight (kDa)

9.24

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 6.9e-15 Double-stranded RNA binding motif
dsrm PF00035 88 - 152 2.1e-15 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1468
AciI CCGC 1 cut(s) 1096
AclWI GGATC 5 cut(s) 392, 405, 563, 1283, 1339
AcsI RAATTY 4 cut(s) 385, 893, 1354, 1439
AcuI CTGAAG 2 cut(s) 260, 1130
AfaI GTAC 5 cut(s) 364, 1022, 1066, 1296, 1497
AfiI CCNNNNNNNGG 4 cut(s) 679, 763, 959, 1150
AjnI CCWGG 5 cut(s) 337, 1083, 1189, 1364, 1542
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
Alw26I GTCTC 2 cut(s) 275, 1541
AlwI GGATC 5 cut(s) 392, 405, 563, 1283, 1339
AlwNI CAGNNNCTG 1 cut(s) 1292
AoxI GGCC 2 cut(s) 340, 913
ApeKI GCWGC 8 cut(s) 176, 179, 233, 434, 443, 627, 727, 1283
ApoI RAATTY 4 cut(s) 385, 893, 1354, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
Asp700I GAANNNNTTC 2 cut(s) 1143, 1402
AspLEI GCGC 2 cut(s) 561, 769
AspS9I GGNCC 6 cut(s) 77, 215, 335, 887, 914, 1194
AsuHPI GGTGA 2 cut(s) 824, 833
AsuII TTCGAA 1 cut(s) 1480
AvaII GGWCC 5 cut(s) 77, 215, 335, 887, 1194
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 1468
BbvI GCAGC 8 cut(s) 163, 191, 220, 421, 430, 639, 739, 1270
BccI CCATC 8 cut(s) 571, 629, 799, 852, 865, 925, 1036, 1285
BceAI ACGGC 1 cut(s) 721
BciT130I CCWGG 5 cut(s) 339, 1085, 1191, 1366, 1544
BciVI GTATCC 1 cut(s) 605
BclI TGATCA 1 cut(s) 1299
BcoDI GTCTC 2 cut(s) 275, 1541
BfaI CTAG 8 cut(s) 405, 707, 1206, 1260, 1328, 1335, 1344, 1458
BfmI CTRYAG 5 cut(s) 177, 625, 743, 1032, 1284
BfoI RGCGCY 1 cut(s) 770
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 8 cut(s) 177, 180, 234, 435, 444, 628, 728, 1284
BlsI GCNGC 8 cut(s) 178, 181, 235, 436, 445, 629, 729, 1285
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 5 cut(s) 339, 1085, 1191, 1366, 1544
Bme18I GGWCC 5 cut(s) 77, 215, 335, 887, 1194
BmgT120I GGNCC 6 cut(s) 77, 215, 335, 887, 914, 1194
BmiI GGNNCC 5 cut(s) 399, 945, 1160, 1195, 1470
BmrFI CCNGG 5 cut(s) 339, 1085, 1191, 1366, 1544
BmrI ACTGGG 2 cut(s) 688, 1176
BmsI GCATC 2 cut(s) 75, 654
BmuI ACTGGG 2 cut(s) 688, 1176
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 1480
BsaBI GATNNNNATC 1 cut(s) 843
BsaJI CCNNGG 4 cut(s) 505, 1189, 1190, 1197
Bsc4I CCNNNNNNNGG 4 cut(s) 679, 763, 959, 1150
Bse118I RCCGGY 1 cut(s) 1216
Bse1I ACTGG 7 cut(s) 259, 471, 683, 1040, 1171, 1499, 1581
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 5 cut(s) 339, 1085, 1191, 1366, 1544
BseDI CCNNGG 4 cut(s) 505, 1189, 1190, 1197
BseGI GGATG 3 cut(s) 253, 791, 1105
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 4 cut(s) 679, 763, 959, 1150
BseMII CTCAG 3 cut(s) 44, 437, 1008
BseNI ACTGG 7 cut(s) 259, 471, 683, 1040, 1171, 1499, 1581
BseXI GCAGC 8 cut(s) 163, 191, 220, 421, 430, 639, 739, 1270
BshFI GGCC 2 cut(s) 342, 915
BshNI GGYRCC 1 cut(s) 1468
BsiSI CCGG 1 cut(s) 1217
BslFI GGGAC 2 cut(s) 487, 1207
BslI CCNNNNNNNGG 4 cut(s) 679, 763, 959, 1150
BsmAI GTCTC 2 cut(s) 275, 1541
BsmFI GGGAC 2 cut(s) 487, 1207
BsnI GGCC 2 cut(s) 342, 915
Bsp119I TTCGAA 1 cut(s) 1480
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 1 cut(s) 1096
BspANI GGCC 2 cut(s) 342, 915
BspCNI CTCAG 3 cut(s) 43, 436, 1009
BspLI GGNNCC 5 cut(s) 399, 945, 1160, 1195, 1470
BspMAI CTGCAG 3 cut(s) 181, 629, 1288
BspPI GGATC 5 cut(s) 392, 405, 563, 1283, 1339
BspT104I TTCGAA 1 cut(s) 1480
BspT107I GGYRCC 1 cut(s) 1468
BsrFI RCCGGY 1 cut(s) 1216
BsrI ACTGG 7 cut(s) 259, 471, 683, 1040, 1171, 1499, 1581
BssAI RCCGGY 1 cut(s) 1216
BssECI CCNNGG 4 cut(s) 505, 1189, 1190, 1197
BssT1I CCWWGG 2 cut(s) 505, 1197
Bst2UI CCWGG 5 cut(s) 339, 1085, 1191, 1366, 1544
Bst4CI ACNGT 7 cut(s) 109, 325, 367, 973, 1064, 1309, 1341
Bst6I CTCTTC 1 cut(s) 205
BstAPI GCANNNNNTGC 3 cut(s) 173, 233, 826
BstBI TTCGAA 1 cut(s) 1480
BstC8I GCNNGC 1 cut(s) 1529
BstDEI CTNAG 7 cut(s) 30, 158, 423, 573, 1017, 1076, 1268
BstDSI CCRYGG 1 cut(s) 1197
BstEII GGTNACC 1 cut(s) 1184
BstF5I GGATG 3 cut(s) 253, 791, 1105
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 2 cut(s) 561, 769
BstMAI GTCTC 2 cut(s) 275, 1541
BstMWI GCNNNNNNNGC 9 cut(s) 173, 188, 233, 293, 440, 443, 733, 826, 1517
BstNI CCWGG 5 cut(s) 339, 1085, 1191, 1366, 1544
BstNSI RCATGY 2 cut(s) 176, 1531
BstPI GGTNACC 1 cut(s) 1184
BstSCI CCNGG 5 cut(s) 337, 1083, 1189, 1364, 1542
BstSFI CTRYAG 5 cut(s) 177, 625, 743, 1032, 1284
BstV1I GCAGC 8 cut(s) 163, 191, 220, 421, 430, 639, 739, 1270
BstX2I RGATCY 3 cut(s) 397, 1288, 1331
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 3 cut(s) 397, 1288, 1331
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 2 cut(s) 342, 915
BtgI CCRYGG 1 cut(s) 1197
BtsCI GGATG 3 cut(s) 253, 791, 1105
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 1 cut(s) 1529
CaiI CAGNNNCTG 1 cut(s) 1292
CfoI GCGC 2 cut(s) 561, 769
Cfr10I RCCGGY 1 cut(s) 1216
Cfr13I GGNCC 6 cut(s) 77, 215, 335, 887, 914, 1194
CsiI ACCWGGT 1 cut(s) 1364
Csp6I GTAC 5 cut(s) 363, 1021, 1065, 1295, 1496
CspCI CAANNNNNGTGG 2 cut(s) 1338, 1373
CviQI GTAC 5 cut(s) 363, 1021, 1065, 1295, 1496
DdeI CTNAG 7 cut(s) 30, 158, 423, 573, 1017, 1076, 1268
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 505, 1197
Eco47I GGWCC 5 cut(s) 77, 215, 335, 887, 1194
Eco57I CTGAAG 2 cut(s) 260, 1130
Eco91I GGTNACC 1 cut(s) 1184
EcoO109I RGGNCCY 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 1184
EcoRII CCWGG 5 cut(s) 337, 1083, 1189, 1364, 1542
EcoT14I CCWWGG 2 cut(s) 505, 1197
ErhI CCWWGG 2 cut(s) 505, 1197
FalI AAGNNNNNCTT 4 cut(s) 202, 234, 1303, 1335
FaqI GGGAC 2 cut(s) 487, 1207
FauI CCCGC 1 cut(s) 1089
FbaI TGATCA 1 cut(s) 1299
Fnu4HI GCNGC 8 cut(s) 177, 180, 234, 435, 444, 628, 728, 1284
FokI GGATG 3 cut(s) 260, 778, 1112
Fsp4HI GCNGC 8 cut(s) 177, 180, 234, 435, 444, 628, 728, 1284
FspBI CTAG 8 cut(s) 405, 707, 1206, 1260, 1328, 1335, 1344, 1458
GlaI GCGC 2 cut(s) 560, 768
GluI GCNGC 8 cut(s) 177, 180, 234, 435, 444, 628, 728, 1284
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 770
HaeIII GGCC 2 cut(s) 342, 915
HapII CCGG 1 cut(s) 1217
HhaI GCGC 2 cut(s) 561, 769
Hin6I GCGC 2 cut(s) 559, 767
HinP1I GCGC 2 cut(s) 559, 767
HincII GTYRAC 3 cut(s) 112, 876, 1586
HindII GTYRAC 3 cut(s) 112, 876, 1586
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 8 cut(s) 96, 500, 1010, 1080, 1202, 1252, 1398, 1549
HpaII CCGG 1 cut(s) 1217
HphI GGTGA 2 cut(s) 824, 833
Hpy166II GTNNAC 5 cut(s) 112, 262, 876, 969, 1586
Hpy188I TCNGA 9 cut(s) 33, 426, 568, 663, 954, 1006, 1177, 1304, 1554
Hpy188III TCNNGA 8 cut(s) 80, 222, 278, 333, 861, 983, 1335, 1344
Hpy8I GTNNAC 5 cut(s) 112, 262, 876, 969, 1586
HpyAV CCTTC 7 cut(s) 68, 228, 317, 863, 1148, 1154, 1413
HpyCH4III ACNGT 7 cut(s) 109, 325, 367, 973, 1064, 1309, 1341
HpyCH4IV ACGT 2 cut(s) 345, 475
HpyF10VI GCNNNNNNNGC 9 cut(s) 173, 188, 233, 293, 440, 443, 733, 826, 1517
HpyF3I CTNAG 7 cut(s) 30, 158, 423, 573, 1017, 1076, 1268
HpySE526I ACGT 2 cut(s) 345, 475
HspAI GCGC 2 cut(s) 559, 767
Ksp22I TGATCA 1 cut(s) 1299
LmnI GCTCC 2 cut(s) 1381, 1516
Lsp1109I GCAGC 8 cut(s) 163, 191, 220, 421, 430, 639, 739, 1270
LweI GCATC 2 cut(s) 75, 654
MabI ACCWGGT 1 cut(s) 1364
MaeI CTAG 8 cut(s) 405, 707, 1206, 1260, 1328, 1335, 1344, 1458
MaeII ACGT 2 cut(s) 345, 475
MaeIII GTNAC 4 cut(s) 738, 973, 1184, 1230
MboII GAAGA 6 cut(s) 222, 477, 527, 1007, 1019, 1582
MfeI CAATTG 2 cut(s) 14, 719
MflI RGATCY 3 cut(s) 397, 1288, 1331
MlyI GAGTC 4 cut(s) 509, 1089, 1261, 1543
MmeI TCCRAC 1 cut(s) 865
MroXI GAANNNNTTC 2 cut(s) 1143, 1402
MseI TTAA 1 cut(s) 1609
MslI CAYNNNNRTG 1 cut(s) 1421
MspA1I CMGCKG 4 cut(s) 785, 1016, 1150, 1475
MspI CCGG 1 cut(s) 1217
MspR9I CCNGG 5 cut(s) 339, 1085, 1191, 1366, 1544
MunI CAATTG 2 cut(s) 14, 719
MvaI CCWGG 5 cut(s) 339, 1085, 1191, 1366, 1544
MwoI GCNNNNNNNGC 9 cut(s) 173, 188, 233, 293, 440, 443, 733, 826, 1517
NcoI CCATGG 1 cut(s) 1197
NlaIV GGNNCC 5 cut(s) 399, 945, 1160, 1195, 1470
NmuCI GTSAC 1 cut(s) 973
NspI RCATGY 2 cut(s) 176, 1531
NspV TTCGAA 1 cut(s) 1480
PaeI GCATGC 1 cut(s) 1531
PasI CCCWGGG 1 cut(s) 1190
PdmI GAANNNNTTC 2 cut(s) 1143, 1402
PfeI GAWTC 4 cut(s) 96, 1010, 1202, 1398
PfoI TCCNGGA 1 cut(s) 1083
PkrI GCNGC 8 cut(s) 178, 181, 235, 436, 445, 629, 729, 1285
PleI GAGTC 4 cut(s) 508, 1088, 1260, 1543
PpsI GAGTC 4 cut(s) 508, 1088, 1260, 1543
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 5 cut(s) 337, 1083, 1189, 1364, 1542
PspEI GGTNACC 1 cut(s) 1184
PspGI CCWGG 5 cut(s) 337, 1083, 1189, 1364, 1542
PspN4I GGNNCC 5 cut(s) 399, 945, 1160, 1195, 1470
PspPI GGNCC 6 cut(s) 77, 215, 335, 887, 914, 1194
PspPPI RGGWCCY 1 cut(s) 215
PsrI GAACNNNNNNTAC 2 cut(s) 1026, 1058
PstI CTGCAG 3 cut(s) 181, 629, 1288
PstNI CAGNNNCTG 1 cut(s) 1292
PsuI RGATCY 3 cut(s) 397, 1288, 1331
PvuII CAGCTG 4 cut(s) 785, 1016, 1150, 1475
RsaI GTAC 5 cut(s) 364, 1022, 1066, 1296, 1497
RsaNI GTAC 5 cut(s) 363, 1021, 1065, 1295, 1496
RseI CAYNNNNRTG 1 cut(s) 1421
SaqAI TTAA 1 cut(s) 1609
SatI GCNGC 8 cut(s) 177, 180, 234, 435, 444, 628, 728, 1284
Sau96I GGNCC 6 cut(s) 77, 215, 335, 887, 914, 1194
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 4 cut(s) 509, 1089, 1261, 1543
ScrFI CCNGG 5 cut(s) 339, 1085, 1191, 1366, 1544
SexAI ACCWGGT 1 cut(s) 1364
SfaNI GCATC 2 cut(s) 75, 654
SfcI CTRYAG 5 cut(s) 177, 625, 743, 1032, 1284
SfuI TTCGAA 1 cut(s) 1480
SinI GGWCC 5 cut(s) 77, 215, 335, 887, 1194
SmiMI CAYNNNNRTG 1 cut(s) 1421
SphI GCATGC 1 cut(s) 1531
SsiI CCGC 1 cut(s) 1096
SspMI CTAG 8 cut(s) 405, 707, 1206, 1260, 1328, 1335, 1344, 1458
StyD4I CCNGG 5 cut(s) 337, 1083, 1189, 1364, 1542
StyI CCWWGG 2 cut(s) 505, 1197
TaaI ACNGT 7 cut(s) 109, 325, 367, 973, 1064, 1309, 1341
TaiI ACGT 2 cut(s) 348, 478
TaqI TCGA 5 cut(s) 94, 328, 583, 1119, 1480
TaqII GACCGA 2 cut(s) 904, 1330
TatI WGTACW 4 cut(s) 362, 1020, 1064, 1294
TfiI GAWTC 4 cut(s) 96, 1010, 1202, 1398
Tru1I TTAA 1 cut(s) 1609
Tru9I TTAA 1 cut(s) 1609
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 8 cut(s) 176, 179, 233, 434, 443, 627, 727, 1283
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 4 cut(s) 264, 398, 1395, 1453
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 1 cut(s) 978
VpaK11BI GGWCC 5 cut(s) 77, 215, 335, 887, 1194
XapI RAATTY 4 cut(s) 385, 893, 1354, 1439
XbaI TCTAGA 2 cut(s) 1334, 1343
XceI RCATGY 2 cut(s) 176, 1531
XmnI GAANNNNTTC 2 cut(s) 1143, 1402
XspI CTAG 8 cut(s) 405, 707, 1206, 1260, 1328, 1335, 1344, 1458
ZrmI AGTACT 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.