Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011570

Physical Location & Seq

Genomic Coordinates Reverse (-)

48732849 .. 48733309

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCATGTAGTCTCCGGCCTCCACCGCCTGAAAAGCAAACTAACCCGATTCCACAAGCTCCGAGTAGTGATCTGAACCTTCGCAGAGGAGGGATGGCGGAGCGCCATAGACAGCAGACGCTGCGGAATCGGAGAACGTCGACGCGGGTTTCGAGGAATTTTTCGATCTCAATCACCGAAGGTTCTTACCTTTCTCACCATGCCCGCGCCGGGCACTATGATCTCAGTTCGCGACTCGCCGCGCAGACCTCTGGTGCTGTCGCCGCACTTTCCAATCTCGGTTTGCGACTCCCCGGGCAGTCAGCCGGTGCCGGAGAATTGACTTGCGATAGAGAGATAGAGATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.63

Weight (kDa)

10.23

Isoelectric Point (pI)

79.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04080 FvH4_6g04080 FvH4_6g04080
malus_domestica	MD04G1216700.v1.1 MD12G1233300.v1.1
prunus_persica	Prupe.6G336400_v2.0.a1
pyrus_communis	pycom04g19270 pycom12g21580
rosa_chinensis	RchiOBHm_Chr3g0452631
rosa_laevigata	RLG00000006117 RLG00000025860
rosa_multiflora	Rmu_sc0030581.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429670
rosa_rugosa	Rorug02G0642000 Rorug02G0642100
rosa_samantha	Rh3AG044400 Rh3BG046700 Rh3CG045200 Rh3DG045600
rosa_wichuraiana	Rw3G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	4 cut(s)	145, 207, 232, 242
AciI	CCGC	7 cut(s)	26, 98, 124, 145, 205, 240, 264
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspLEI	GCGC	3 cut(s)	105, 209, 244
AsuC2I	CCSGG	3 cut(s)	211, 294, 295
AsuHPI	GGTGA	2 cut(s)	166, 188
AvaI	CYCGRG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	88
BcnI	CCSGG	3 cut(s)	211, 294, 295
BcoDI	GTCTC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	3 cut(s)	122, 240, 264
BlsI	GCNGC	3 cut(s)	123, 241, 265
Bme1390I	CCNGG	3 cut(s)	211, 294, 295
BmeT110I	CYCGRG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	211, 294, 295
BpuMI	CCSGG	3 cut(s)	211, 294, 295
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	292, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	292, 293
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	4 cut(s)	145, 207, 232, 242
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	16, 210, 294, 306, 312
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	70, 165, 220
Bsp68I	TCGCGA	1 cut(s)	232
BspACI	CCGC	7 cut(s)	26, 98, 124, 145, 205, 240, 264
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	4 cut(s)	145, 207, 232, 242
BspLI	GGNNCC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	292, 293
BssMI	GATC	3 cut(s)	70, 165, 220
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	4 cut(s)	145, 207, 232, 242
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	105, 209, 244
BstKTI	GATC	3 cut(s)	73, 168, 223
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	70, 165, 220
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 121, 263
BstSCI	CCNGG	3 cut(s)	209, 292, 293
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	4 cut(s)	145, 207, 232, 242
BstV1I	GCAGC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	99
BtuMI	TCGCGA	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	121
CfoI	GCGC	3 cut(s)	105, 209, 244
Cfr10I	RCCGGY	1 cut(s)	305
Cfr9I	CCCGGG	1 cut(s)	293
CseI	GACGC	2 cut(s)	127, 151
CviAII	CATG	2 cut(s)	6, 200
CviJI	RGCY	3 cut(s)	19, 59, 305
CviKI_1	RGCY	3 cut(s)	19, 59, 305
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	72, 167, 222
DpnII	GATC	3 cut(s)	70, 165, 220
EciI	GGCGGA	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	293
FaeI	CATG	2 cut(s)	9, 203
FaiI	YATR	4 cut(s)	7, 108, 201, 219
FatI	CATG	2 cut(s)	5, 199
FauI	CCCGC	2 cut(s)	138, 212
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	122, 240, 264
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	122, 240, 264
GlaI	GCGC	3 cut(s)	104, 208, 243
GluI	GCNGC	3 cut(s)	122, 240, 264
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	5 cut(s)	16, 210, 294, 306, 312
HgaI	GACGC	2 cut(s)	127, 151
HhaI	GCGC	3 cut(s)	105, 209, 244
Hin1II	CATG	2 cut(s)	9, 203
Hin6I	GCGC	3 cut(s)	103, 207, 242
HinP1I	GCGC	3 cut(s)	103, 207, 242
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	4 cut(s)	49, 127, 234, 288
HpaII	CCGG	5 cut(s)	16, 210, 294, 306, 312
HphI	GGTGA	2 cut(s)	166, 188
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	3 cut(s)	63, 75, 132
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	2 cut(s)	142, 145
HpyAV	CCTTC	2 cut(s)	89, 173
HpyCH4IV	ACGT	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 121, 263
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	9, 203
HspAI	GCGC	3 cut(s)	103, 207, 242
Kzo9I	GATC	3 cut(s)	70, 165, 220
LmnI	GCTCC	2 cut(s)	64, 100
LpnPI	CCDG	7 cut(s)	29, 42, 223, 237, 307, 319, 325
Lsp1109I	GCAGC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	137
MalI	GATC	3 cut(s)	72, 167, 222
MboI	GATC	3 cut(s)	70, 165, 220
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	157, 317
MlyI	GAGTC	2 cut(s)	228, 282
MnlI	CCTC	5 cut(s)	30, 80, 83, 147, 259
MspI	CCGG	5 cut(s)	16, 210, 294, 306, 312
MspR9I	CCNGG	3 cut(s)	211, 294, 295
MvnI	CGCG	4 cut(s)	145, 207, 232, 242
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 121, 263
NciI	CCSGG	3 cut(s)	211, 294, 295
NdeII	GATC	3 cut(s)	70, 165, 220
NlaIII	CATG	2 cut(s)	9, 203
NlaIV	GGNNCC	1 cut(s)	310
NruI	TCGCGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	49, 127
PkrI	GCNGC	3 cut(s)	123, 241, 265
PleI	GAGTC	2 cut(s)	228, 282
PpsI	GAGTC	2 cut(s)	228, 282
PspN4I	GGNNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	121
RruI	TCGCGA	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	122, 240, 264
Sau3AI	GATC	3 cut(s)	70, 165, 220
SchI	GAGTC	2 cut(s)	228, 282
ScrFI	CCNGG	3 cut(s)	211, 294, 295
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	6 cut(s)	61, 81, 140, 184, 192, 251
SgrDI	CGTCGACG	1 cut(s)	139
SmaI	CCCGGG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	157, 317
SsiI	CCGC	7 cut(s)	26, 98, 124, 145, 205, 240, 264
StyD4I	CCNGG	3 cut(s)	209, 292, 293
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	140, 152, 164
TasI	AATT	2 cut(s)	157, 317
TauI	GCSGC	2 cut(s)	242, 266
TfiI	GAWTC	2 cut(s)	49, 127
TseI	GCWGC	1 cut(s)	121
TspMI	CCCGGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	157
XmaI	CCCGGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.