Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0017703

Physical Location & Seq

Genomic Coordinates Forward (+)

24132785 .. 24133327

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGAATCCTATACCCAACACCGTCTTTGATCAGTTGGTTTCGATTGGGAGGTTGATTACTGACTTTCAAGATGGGGGTGATGCTGGAGGGTCTGCCGTGGTTAATGGTGATGAAGCCCTTGATGACGATGTGGGTGTTGCCGTTGAGTTTGAAGAGAATGAAGATGATGACGAGGAGAGTGATCTTGATATGGTCCAGGAGGACGAGGAAGAGGACGACGATGATGTGGCTGAACCACATCAGTCTGGGGCTATGCAAATGGGTGGGATTGATGATGATGAAATGCAGGAAGCAAATGAGGGTATGAACCTTAATGTTCAGGACATTGATGCATATTGGCTTCAGAGGAAGATATCTGAAGCTTATGAGAAACATTTTTCCACCCTGCATCGATCGATCCACAACAATGCCAGAAGCTTGCTGAAGAGGTGCTCAAGATACTCGCTGAAGGTGATGACAGGGAAGTTGAAACCAAGCTGTTGGTTCACCTTCAGTTTGACAAATTCAGCCTTATTAAGTGTCTGTGTCGAAACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

181

Amino Acids

20.0

Weight (kDa)

4.05

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47191
pyrus_communis	pycom12g23590
rosa_laevigata	RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora	Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha	Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	5 cut(s)	329, 381, 446, 470, 478
AgsI	TTSAA	4 cut(s)	7, 71, 155, 472
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	365, 420, 480
AluI	AGCT	3 cut(s)	365, 420, 480
Alw21I	GWGCWC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	4 cut(s)	92, 122, 466, 481
AvaII	GGWCC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	437
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	83, 128
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	73, 322, 400
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	2 cut(s)	394, 398
BsaJI	CCNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	2 cut(s)	394, 398
BseDI	CCNNGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	398
BshVI	ATCGAT	2 cut(s)	394, 398
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	31, 184, 395, 399
BspDI	ATCGAT	2 cut(s)	394, 398
BspPI	GGATC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	4 cut(s)	31, 184, 395, 399
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	3 cut(s)	150, 207, 422
BstC8I	GCNNGC	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	4 cut(s)	34, 187, 398, 402
BstMBI	GATC	4 cut(s)	31, 184, 395, 399
BstMCI	CGRYCG	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	483
Bsu15I	ATCGAT	2 cut(s)	394, 398
BsuTUI	ATCGAT	2 cut(s)	394, 398
BtgI	CCRYGG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	2 cut(s)	394, 398
CviJI	RGCY	9 cut(s)	119, 233, 254, 343, 365, 420, 480, 512, 540
CviKI_1	RGCY	9 cut(s)	119, 233, 254, 343, 365, 420, 480, 512, 540
DpnI	GATC	4 cut(s)	33, 186, 397, 401
DpnII	GATC	4 cut(s)	31, 184, 395, 399
Eam1104I	CTCTTC	3 cut(s)	150, 207, 422
EarI	CTCTTC	3 cut(s)	150, 207, 422
Eco32I	GATATC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	5 cut(s)	329, 381, 446, 470, 478
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	337
FaiI	YATR	6 cut(s)	14, 194, 257, 308, 337, 369
FbaI	TGATCA	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	1 cut(s)	537
HindIII	AAGCTT	2 cut(s)	363, 418
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	4 cut(s)	92, 122, 466, 481
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	2 cut(s)	348, 361
Hpy188III	TCNNGA	4 cut(s)	71, 188, 323, 438
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	445, 502
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	259, 289, 335, 391
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 184, 395, 399
LpnPI	CCDG	9 cut(s)	72, 185, 212, 234, 275, 308, 401, 427, 447
LweI	GCATC	3 cut(s)	73, 322, 400
MalI	GATC	4 cut(s)	33, 186, 397, 401
MboI	GATC	4 cut(s)	31, 184, 395, 399
MboII	GAAGA	5 cut(s)	167, 176, 224, 364, 439
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	1 cut(s)	505
MnlI	CCTC	9 cut(s)	45, 83, 169, 196, 202, 208, 295, 342, 423
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	3 cut(s)	105, 315, 518
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
NdeII	GATC	4 cut(s)	31, 184, 395, 399
NsiI	ATGCAT	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	198
Ple19I	CGATCG	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	196
PvuI	CGATCG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	105, 315, 518
Sau3AI	GATC	4 cut(s)	31, 184, 395, 399
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	8 cut(s)	56, 315, 367, 422, 434, 456, 482, 494
SfaNI	GCATC	3 cut(s)	73, 322, 400
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	44, 394, 398, 531
TasI	AATT	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	105, 315, 518
Tru9I	TTAA	3 cut(s)	105, 315, 518
TspDTI	ATGAA	4 cut(s)	129, 177, 297, 323
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.