pycom12g23840

Photosystem I reaction center subunit XI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0014020
Physical Location & Seq
Reverse (-)
24298730 .. 24300237
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGGCCTCAGCTTCTCCAATGGCCAGCCAGCTTAAATCCAACTTCACCTCTCCAATCACCACCAGACCTGCCTTGCTTTCTCCCAAGGGCCTCTCTGCCTCCCCACTCAGGCTCTTCCCTTCCAAGAGACTCTCTTCCTTCTCCATCAAGGCTGTCCAATCTGACAAGCAAAATTTCCAAGTGATTCAACCCATCAACGGTGATCCTTTCATTGGAAGCTTGGAGACTCCAGTGACATCAAGCCCTTTAATTGCCTGGTACTTGTCCAACCTCCCAGCCTACAGGACAGCAGTCAGCCCACTTCTCCGGGGTGTTGAGGTGGGTCTAGCCCACGGTTACCTTCTGGTAGGCCCGTTTGTCAAGACTGGCCCATTGAGGAACACTCCCTATGCCGGAGGAGCTGGCTCCTTGGCTGCTGCTGGTCTTGTGGTCATCCTAACCCTTTGCTTGACAATCTATGGAATTTCCTCCTTCAAGGAAGGAGAGCCGTCCTCCGCGCCCGCTTTGACATTGACCGGCCGAAAGAAGGAGCCCGATCAGCTCCAAACCGCCGAAGGGTGGTCTAAATTCACCGGTGGGTTCTTCTTCGGAGGCATTTCGGGCGTCACTTGGGCCTACTTCCTCCTCTATGTCGTAAACCTTCCTTACTACTTCAAGTAG

Protein Analysis

220

Amino Acids

23.34

Weight (kDa)

9.74

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaL PF02605 61 - 212 4e-59 Photosystem I reaction centre subunit XI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12800
fragaria_vesca FvH4_6g00530
malus_domestica MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica Prupe.6G361000_v2.0.a1
pyrus_communis pycom04g21530 pycom12g23840
rosa_chinensis RchiOBHm_Chr3g0447921
rosa_laevigata RLG00000025961
rosa_multiflora Rmu_sc0005969.1_g000004
rosa_roxburghii Rroxscaffold_6G00426110
rosa_rugosa Rorug02G0607000
rosa_samantha Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana Rw3G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AccII CGCG 1 cut(s) 497
AciI CCGC 3 cut(s) 495, 501, 549
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 2 cut(s) 21, 517
AcsI RAATTY 3 cut(s) 172, 462, 566
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 7 cut(s) 108, 197, 212, 392, 526, 555, 558
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 3 cut(s) 188, 475, 655
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 5 cut(s) 11, 31, 219, 401, 541
AluI AGCT 5 cut(s) 11, 31, 219, 401, 541
Alw26I GTCTC 2 cut(s) 121, 218
AlwI GGATC 1 cut(s) 197
AoxI GGCC 7 cut(s) 3, 21, 88, 349, 367, 517, 612
ApeKI GCWGC 2 cut(s) 413, 416
ApoI RAATTY 3 cut(s) 172, 462, 566
AsiGI ACCGGT 1 cut(s) 572
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 4 cut(s) 88, 350, 368, 612
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 37, 49, 212, 562
BalI TGGCCA 1 cut(s) 23
BanII GRGCYC 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 400, 403
BccI CCATC 2 cut(s) 152, 200
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 121, 218
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 2 cut(s) 414, 417
BlsI GCNGC 2 cut(s) 415, 418
Bme1390I CCNGG 2 cut(s) 256, 308
BmgT120I GGNCC 4 cut(s) 88, 350, 368, 612
BmiI GGNNCC 2 cut(s) 406, 531
BmrFI CCNGG 2 cut(s) 256, 308
BoxI GACNNNNGTC 1 cut(s) 290
BplI GAGNNNNNCTC 4 cut(s) 367, 399, 476, 508
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 84, 307, 331, 408
BsaWI WCCGGW 1 cut(s) 572
Bsc4I CCNNNNNNNGG 7 cut(s) 108, 197, 212, 392, 526, 555, 558
Bse118I RCCGGY 2 cut(s) 515, 572
Bse1I ACTGG 2 cut(s) 230, 370
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 4 cut(s) 84, 307, 331, 408
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 7 cut(s) 108, 197, 212, 392, 526, 555, 558
BseMII CTCAG 2 cut(s) 21, 121
BseNI ACTGG 2 cut(s) 230, 370
BseRI GAGGAG 2 cut(s) 411, 614
BseX3I CGGCCG 1 cut(s) 517
BseXI GCAGC 2 cut(s) 400, 403
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 7 cut(s) 5, 23, 90, 351, 369, 519, 614
BshTI ACCGGT 1 cut(s) 572
BsiEI CGRYCG 1 cut(s) 520
BsiSI CCGG 4 cut(s) 307, 393, 516, 573
BslI CCNNNNNNNGG 7 cut(s) 108, 197, 212, 392, 526, 555, 558
BsmAI GTCTC 2 cut(s) 121, 218
BsnI GGCC 7 cut(s) 5, 23, 90, 351, 369, 519, 614
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 2 cut(s) 202, 535
BspACI CCGC 3 cut(s) 495, 501, 549
BspANI GGCC 7 cut(s) 5, 23, 90, 351, 369, 519, 614
BspCNI CTCAG 2 cut(s) 20, 120
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 2 cut(s) 406, 531
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 119
BsrFI RCCGGY 2 cut(s) 515, 572
BsrI ACTGG 2 cut(s) 230, 370
BssAI RCCGGY 2 cut(s) 515, 572
BssECI CCNNGG 4 cut(s) 84, 307, 331, 408
BssMI GATC 2 cut(s) 202, 535
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 2 cut(s) 84, 408
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 200, 335
Bst6I CTCTTC 2 cut(s) 119, 139
BstACI GRCGYC 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 25, 29, 403, 501
BstDEI CTNAG 2 cut(s) 7, 107
BstDSI CCRYGG 1 cut(s) 331
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 497
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 205, 538
BstMAI GTCTC 2 cut(s) 121, 218
BstMBI GATC 2 cut(s) 202, 535
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 3 cut(s) 398, 538, 600
BstNI CCWGG 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 254, 306
BstSFI CTRYAG 1 cut(s) 280
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 400, 403
BstZI CGGCCG 1 cut(s) 517
BsuRI GGCC 7 cut(s) 5, 23, 90, 351, 369, 519, 614
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 4 cut(s) 25, 29, 403, 501
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 515, 572
Cfr13I GGNCC 4 cut(s) 88, 350, 368, 612
CseI GACGC 1 cut(s) 592
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 572
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 7, 107
DpnI GATC 2 cut(s) 204, 537
DpnII GATC 2 cut(s) 202, 535
EaeI YGGCCR 2 cut(s) 21, 517
EagI CGGCCG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 119, 139
EarI CTCTTC 2 cut(s) 119, 139
EclXI CGGCCG 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 84, 408
Eco24I GRGCYC 1 cut(s) 534
Eco52I CGGCCG 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 84, 408
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 2 cut(s) 84, 408
FaiI YATR 3 cut(s) 390, 459, 630
FauI CCCGC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 414, 417
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 2 cut(s) 414, 417
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 498
GluI GCNGC 2 cut(s) 414, 417
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 7 cut(s) 5, 23, 90, 351, 369, 519, 614
HapII CCGG 4 cut(s) 307, 393, 516, 573
HgaI GACGC 1 cut(s) 592
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 603
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 3 cut(s) 129, 184, 226
HpaII CCGG 4 cut(s) 307, 393, 516, 573
HphI GGTGA 4 cut(s) 37, 49, 212, 562
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 2 cut(s) 163, 590
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 8 cut(s) 129, 148, 350, 473, 481, 520, 548, 650
HpyCH4III ACNGT 2 cut(s) 200, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 538, 600
HpyF3I CTNAG 2 cut(s) 7, 107
Hsp92I GRCGYC 1 cut(s) 603
HspAI GCGC 1 cut(s) 497
Kzo9I GATC 2 cut(s) 202, 535
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 4 cut(s) 398, 410, 529, 546
Lsp1109I GCAGC 2 cut(s) 400, 403
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 232, 335, 604
MalI GATC 2 cut(s) 204, 537
MboI GATC 2 cut(s) 202, 535
MboII GAAGA 4 cut(s) 106, 126, 574, 577
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 4 cut(s) 172, 249, 462, 566
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 2 cut(s) 123, 220
MmeI TCCRAC 2 cut(s) 63, 291
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
MseI TTAA 2 cut(s) 33, 248
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 4 cut(s) 307, 393, 516, 573
MspR9I CCNGG 2 cut(s) 256, 308
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 3 cut(s) 398, 538, 600
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 202, 535
NlaIV GGNNCC 2 cut(s) 406, 531
NmuCI GTSAC 2 cut(s) 232, 604
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 184
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 2 cut(s) 415, 418
PleI GAGTC 2 cut(s) 123, 220
PpsI GAGTC 2 cut(s) 123, 220
PshAI GACNNNNGTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 406, 531
PspPI GGNCC 4 cut(s) 88, 350, 368, 612
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 33, 248
SatI GCNGC 2 cut(s) 414, 417
Sau3AI GATC 2 cut(s) 202, 535
Sau96I GGNCC 4 cut(s) 88, 350, 368, 612
SchI GAGTC 2 cut(s) 123, 220
ScrFI CCNGG 2 cut(s) 256, 308
SduI GDGCHC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 280
SgrAI CRCCGGYG 1 cut(s) 572
Sse9I AATT 4 cut(s) 172, 249, 462, 566
SsiI CCGC 3 cut(s) 495, 501, 549
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 254, 306
StyI CCWWGG 2 cut(s) 84, 408
TaaI ACNGT 2 cut(s) 200, 335
TasI AATT 4 cut(s) 172, 249, 462, 566
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 2 cut(s) 33, 248
Tru9I TTAA 2 cut(s) 33, 248
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 232, 604
TseI GCWGC 2 cut(s) 413, 416
Tsp45I GTSAC 2 cut(s) 232, 604
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 1 cut(s) 237
XapI RAATTY 3 cut(s) 172, 462, 566
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.