Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007777

Physical Location & Seq

Genomic Coordinates Reverse (-)

24444998 .. 24449543

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGACGCGCTGAGGAAGCAGCTCGACCAGCTCATGGGGGCCAACCGAAACGGCGACGTTCGGGAGGTCAACCGCAAGTATTACGATCGCGATGTGTGTCGCCTCTACTTGGTCGGCCTCTGCCCCCACGAGCTTTTTCAGTTAACGAAAATGGATATGGGTCCGTGCCCTAAGGTCCACTCTTTGCAGCTCAGAAAAGAAGACCTGGAGGATGTCATAGATAGGCTCATTGTTGAGTGTGATAGGAAAATTACTAGAGCTCTTAAGCGCCTCGAGGATGATGATGCCAAGGCTGCTATTGCCATTTCTGTCTCTGAAGTTACTCAGACACCAGAGATACTTGAGTTGTCAAAGCAGATCAAGGAGAAGTTGAAAGAAGTTGATCAATATGATCTTGAAGGCAAAATCGATCTTAAGATTCGGGCTTTGGAGATAGTAGAAGAACTCAGAGGCATTAGAGCAGATAAACAGTCCACGTTACTTCTGGACGCTTTCAATAAGGACCGGGCAGCTTTACCTCAACCCCTGCCAAACCCACCTCCTTTGGCACCCTTGCCTGTAGTTGTTCCTGATGCAAGAACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGTATGGTTGATGAAGCACAGAAGGCGTTGGAAGAGGCTGAAGCACTGAAGAAGCTGCCTGCCAGACAAGAGCCTATCGTGGATTCCTCCAAGTACACTGCTGCTGATGTTCGTATTACTGATCAAAAGCTACGCGTTTGTGACATCTGTGGAGCATTTTTGAGTGTTTATGACAGTGACCGTCGTTTAGCTGACCACTTTGGCGGGAAGCTTCATTTAGGCTATATACAAATCCGTGAGAAGTTAGCAGAGCTGCAGGAAGAGAGAAACAAGAGTCGTAAGGTTGATAGGTCTGATGATAGGAGATCAAAGGAGCGAAGTAAGGAATGTGACAGGGAATCAAGTAGGGATAGAGAACGTGGAGCTAGCCGGGACCGGGGTAGGGATTATGATCGTAGGAGCAGAGATCGCGATAGGTACTATGATCGAGATCGTGGATATGATCGCGATCGTGACAGAGATTCAGATCGCTCCCGCAATTATGATTCGAGAAGTCGCCGTAGGTCACGCTCACGATCGAGGGAACGTTCCAGGGATTATGATCGCCACAGGCGTTATGATCGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LUC7

Protein Analysis

401

Amino Acids

47.02

Weight (kDa)

8.86

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LUC7	PF03194	2 - 155	5.3e-28	LUC7 N_terminus
LUC7	PF03194	194 - 311	1.3e-31	LUC7 N_terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03340 AT3G03340 AT3G03340 AT5G17440 AT5G17440
fragaria_vesca	FvH4_6g00250 FvH4_6g00250 FvH4_6g00250
malus_domestica	MD04G1246800.v1.1 MD12G1263400.v1.1
prunus_persica	Prupe.6G363000_v2.0.a1
pyrus_communis	pycom04g21750 pycom12g24040
rosa_chinensis	RchiOBHm_Chr3g0447621
rosa_laevigata	RLG00000025983
rosa_multiflora	Rmu_sc0003550.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425830
rosa_rugosa	Rorug02G0603600 Rorug02G0603700
rosa_samantha	Rh3AG003800 Rh3BG003300 Rh3CG003600 Rh3DG003600
rosa_wichuraiana	Rw3G000270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
AciI	CCGC	3 cut(s)	73, 837, 1108
AclI	AACGTT	1 cut(s)	1159
AcuI	CTGAAG	3 cut(s)	336, 693, 701
AfaI	GTAC	3 cut(s)	728, 1052, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	34, 109, 1009, 1015
AflII	CTTAAG	2 cut(s)	263, 413
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	4 cut(s)	373, 398, 496, 607
AjnI	CCWGG	2 cut(s)	204, 1163
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	39, 115
ApeKI	GCWGC	7 cut(s)	19, 187, 293, 509, 688, 734, 886
AspLEI	GCGC	2 cut(s)	10, 270
AspS9I	GGNCC	6 cut(s)	39, 161, 175, 502, 619, 1006
AsuC2I	CCSGG	3 cut(s)	506, 1004, 1010
AsuHPI	GGTGA	1 cut(s)	638
AsuNHI	GCTAGC	1 cut(s)	998
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	5 cut(s)	161, 175, 502, 619, 1006
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	329, 362
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	7 cut(s)	31, 199, 280, 521, 675, 721, 873
BceAI	ACGGC	2 cut(s)	67, 1116
BciT130I	CCWGG	2 cut(s)	206, 1165
BclI	TGATCA	2 cut(s)	382, 754
BcnI	CCSGG	3 cut(s)	506, 1004, 1010
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	3 cut(s)	255, 999, 1201
BfmI	CTRYAG	2 cut(s)	558, 887
BfoI	RGCGCY	1 cut(s)	271
BfrI	CTTAAG	2 cut(s)	263, 413
BisI	GCNGC	7 cut(s)	20, 188, 294, 510, 689, 735, 887
BlsI	GCNGC	7 cut(s)	21, 189, 295, 511, 690, 736, 888
Bme1390I	CCNGG	5 cut(s)	206, 506, 1004, 1010, 1165
Bme18I	GGWCC	5 cut(s)	161, 175, 502, 619, 1006
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	6 cut(s)	39, 161, 175, 502, 619, 1006
BmiI	GGNNCC	4 cut(s)	40, 162, 549, 1007
BmrFI	CCNGG	5 cut(s)	206, 506, 1004, 1010, 1165
BmsI	GCATC	2 cut(s)	274, 562
BmtI	GCTAGC	1 cut(s)	1002
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	3 cut(s)	506, 1004, 1010
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	5 cut(s)	1023, 1062, 1080, 1098, 1173
BsaJI	CCNNGG	4 cut(s)	288, 622, 1009, 1164
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 109, 1009, 1015
Bse21I	CCTNAGG	1 cut(s)	171
Bse8I	GATNNNNATC	5 cut(s)	1023, 1062, 1080, 1098, 1173
BseBI	CCWGG	2 cut(s)	206, 1165
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	288, 622, 1009, 1164
BseGI	GGATG	2 cut(s)	217, 283
BseJI	GATNNNNATC	5 cut(s)	1023, 1062, 1080, 1098, 1173
BseLI	CCNNNNNNNGG	4 cut(s)	34, 109, 1009, 1015
BseMII	CTCAG	3 cut(s)	205, 338, 460
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	7 cut(s)	31, 199, 280, 521, 675, 721, 873
Bsh1236I	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
Bsh1285I	CGRYCG	3 cut(s)	88, 1084, 1151
BshFI	GGCC	2 cut(s)	41, 117
BshNI	GGYRCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	3 cut(s)	88, 1084, 1151
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	505, 1003, 1009
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	4 cut(s)	34, 109, 1009, 1015
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	1019
BsnI	GGCC	2 cut(s)	41, 117
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	170, 262
Bsp68I	TCGCGA	3 cut(s)	90, 1044, 1080
BspACI	CCGC	3 cut(s)	73, 837, 1108
BspANI	GGCC	2 cut(s)	41, 117
BspCNI	CTCAG	3 cut(s)	204, 337, 459
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
BspLI	GGNNCC	4 cut(s)	40, 162, 549, 1007
BspMAI	CTGCAG	1 cut(s)	891
BspOI	GCTAGC	1 cut(s)	1002
BspT107I	GGYRCC	1 cut(s)	547
BspTI	CTTAAG	2 cut(s)	263, 413
BssECI	CCNNGG	4 cut(s)	288, 622, 1009, 1164
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	2 cut(s)	288, 622
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	206, 1165
Bst4CI	ACNGT	3 cut(s)	471, 809, 815
Bst6I	CTCTTC	2 cut(s)	660, 888
BstAFI	CTTAAG	2 cut(s)	263, 413
BstC8I	GCNNGC	2 cut(s)	693, 1000
BstDEI	CTNAG	5 cut(s)	11, 171, 191, 324, 446
BstF5I	GGATG	2 cut(s)	217, 283
BstFNI	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	10, 270
BstMAI	GTCTC	1 cut(s)	316
BstMCI	CGRYCG	3 cut(s)	88, 1084, 1151
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 28, 293, 299, 656, 1041
BstNI	CCWGG	2 cut(s)	206, 1165
BstSCI	CCNGG	5 cut(s)	204, 504, 1002, 1008, 1163
BstSFI	CTRYAG	2 cut(s)	558, 887
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
BstV1I	GCAGC	7 cut(s)	31, 199, 280, 521, 675, 721, 873
BstV2I	GAAGAC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	41, 117
BsuTUI	ATCGAT	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	217, 283
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	3 cut(s)	677, 729, 814
BtuMI	TCGCGA	3 cut(s)	90, 1044, 1080
Cac8I	GCNNGC	2 cut(s)	693, 1000
CfoI	GCGC	2 cut(s)	10, 270
Cfr13I	GGNCC	6 cut(s)	39, 161, 175, 502, 619, 1006
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	2 cut(s)	14, 497
Csp6I	GTAC	3 cut(s)	727, 1051, 1198
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	3 cut(s)	727, 1051, 1198
DdeI	CTNAG	5 cut(s)	11, 171, 191, 324, 446
Eam1104I	CTCTTC	2 cut(s)	660, 888
EarI	CTCTTC	2 cut(s)	660, 888
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	288, 622
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	5 cut(s)	161, 175, 502, 619, 1006
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	3 cut(s)	336, 693, 701
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	204, 1163
EcoT14I	CCWWGG	2 cut(s)	288, 622
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	288, 622
FaeI	CATG	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	1 cut(s)	33
FauI	CCCGC	2 cut(s)	830, 1115
FbaI	TGATCA	2 cut(s)	382, 754
Fnu4HI	GCNGC	7 cut(s)	20, 188, 294, 510, 689, 735, 887
FokI	GGATG	2 cut(s)	224, 290
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	7 cut(s)	20, 188, 294, 510, 689, 735, 887
FspBI	CTAG	3 cut(s)	255, 999, 1201
GlaI	GCGC	2 cut(s)	9, 269
GluI	GCNGC	7 cut(s)	20, 188, 294, 510, 689, 735, 887
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	41, 117
HapII	CCGG	3 cut(s)	505, 1003, 1009
HgaI	GACGC	2 cut(s)	14, 497
HhaI	GCGC	2 cut(s)	10, 270
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	8, 268
HinP1I	GCGC	2 cut(s)	8, 268
HincII	GTYRAC	2 cut(s)	70, 144
HindII	GTYRAC	2 cut(s)	70, 144
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	6 cut(s)	418, 716, 907, 971, 1094, 1118
HpaI	GTTAAC	1 cut(s)	144
HpaII	CCGG	3 cut(s)	505, 1003, 1009
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	5 cut(s)	70, 144, 178, 474, 729
Hpy188I	TCNGA	6 cut(s)	194, 316, 327, 449, 928, 1099
Hpy8I	GTNNAC	5 cut(s)	70, 144, 178, 474, 729
Hpy99I	CGWCG	2 cut(s)	59, 819
HpyAV	CCTTC	3 cut(s)	392, 604, 649
HpyCH4III	ACNGT	3 cut(s)	471, 809, 815
HpyCH4IV	ACGT	4 cut(s)	57, 476, 991, 1159
HpyCH4V	TGCA	3 cut(s)	187, 575, 889
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 28, 293, 299, 656, 1041
HpyF3I	CTNAG	5 cut(s)	11, 171, 191, 324, 446
HpySE526I	ACGT	4 cut(s)	57, 476, 991, 1159
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	8, 268
Ksp22I	TGATCA	2 cut(s)	382, 754
KspAI	GTTAAC	1 cut(s)	144
LmnI	GCTCC	5 cut(s)	785, 946, 995, 1032, 1109
Lsp1109I	GCAGC	7 cut(s)	31, 199, 280, 521, 675, 721, 873
LweI	GCATC	2 cut(s)	274, 562
MaeI	CTAG	3 cut(s)	255, 999, 1201
MaeII	ACGT	4 cut(s)	57, 476, 991, 1159
MaeIII	GTNAC	7 cut(s)	319, 477, 773, 809, 962, 1085, 1137
MboII	GAAGA	6 cut(s)	212, 452, 619, 677, 694, 905
MhlI	GDGCHC	2 cut(s)	170, 262
MluCI	AATT	2 cut(s)	249, 1111
MluI	ACGCGT	1 cut(s)	766
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	1 cut(s)	642
MseI	TTAA	3 cut(s)	143, 264, 414
MspCI	CTTAAG	2 cut(s)	263, 413
MspI	CCGG	3 cut(s)	505, 1003, 1009
MspR9I	CCNGG	5 cut(s)	206, 506, 1004, 1010, 1165
MvaI	CCWGG	2 cut(s)	206, 1165
MvnI	CGCG	5 cut(s)	8, 90, 768, 1044, 1080
MwoI	GCNNNNNNNGC	6 cut(s)	16, 28, 293, 299, 656, 1041
NciI	CCSGG	3 cut(s)	506, 1004, 1010
NheI	GCTAGC	1 cut(s)	998
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	4 cut(s)	40, 162, 549, 1007
NmuCI	GTSAC	5 cut(s)	773, 809, 962, 1085, 1137
NruI	TCGCGA	3 cut(s)	90, 1044, 1080
PaeR7I	CTCGAG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	1183
PfeI	GAWTC	5 cut(s)	418, 716, 971, 1094, 1118
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	21, 189, 295, 511, 690, 736, 888
Ple19I	CGATCG	3 cut(s)	88, 1084, 1151
PleI	GAGTC	1 cut(s)	915
PpsI	GAGTC	1 cut(s)	915
PpuMI	RGGWCCY	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	1159
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	204, 1163
PspGI	CCWGG	2 cut(s)	204, 1163
PspN4I	GGNNCC	4 cut(s)	40, 162, 549, 1007
PspPI	GGNCC	6 cut(s)	39, 161, 175, 502, 619, 1006
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	891
PvuI	CGATCG	3 cut(s)	88, 1084, 1151
RruI	TCGCGA	3 cut(s)	90, 1044, 1080
RsaI	GTAC	3 cut(s)	728, 1052, 1199
RsaNI	GTAC	3 cut(s)	727, 1051, 1198
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	143, 264, 414
SatI	GCNGC	7 cut(s)	20, 188, 294, 510, 689, 735, 887
Sau96I	GGNCC	6 cut(s)	39, 161, 175, 502, 619, 1006
SchI	GAGTC	1 cut(s)	916
ScrFI	CCNGG	5 cut(s)	206, 506, 1004, 1010, 1165
SduI	GDGCHC	2 cut(s)	170, 262
SfaNI	GCATC	2 cut(s)	274, 562
SfcI	CTRYAG	2 cut(s)	558, 887
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	5 cut(s)	161, 175, 502, 619, 1006
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	4 cut(s)	263, 272, 341, 413
SmoI	CTYRAG	4 cut(s)	263, 272, 341, 413
Sse9I	AATT	2 cut(s)	249, 1111
SsiI	CCGC	3 cut(s)	73, 837, 1108
SspMI	CTAG	3 cut(s)	255, 999, 1201
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	5 cut(s)	204, 504, 1002, 1008, 1163
StyI	CCWWGG	2 cut(s)	288, 622
TaaI	ACNGT	3 cut(s)	471, 809, 815
TaiI	ACGT	4 cut(s)	60, 479, 994, 1162
TaqI	TCGA	6 cut(s)	24, 273, 408, 1060, 1121, 1151
TasI	AATT	2 cut(s)	249, 1111
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	5 cut(s)	418, 716, 971, 1094, 1118
Tru1I	TTAA	3 cut(s)	143, 264, 414
Tru9I	TTAA	3 cut(s)	143, 264, 414
TscAI	CASTG	3 cut(s)	684, 736, 814
TseFI	GTSAC	5 cut(s)	773, 809, 962, 1085, 1137
TseI	GCWGC	7 cut(s)	19, 187, 293, 509, 688, 734, 886
Tsp45I	GTSAC	5 cut(s)	773, 809, 962, 1085, 1137
TspDTI	ATGAA	3 cut(s)	612, 660, 836
TspGWI	ACGGA	2 cut(s)	153, 857
TspRI	CASTG	3 cut(s)	684, 736, 814
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	2 cut(s)	263, 413
VpaK11BI	GGWCC	5 cut(s)	161, 175, 502, 619, 1006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	3 cut(s)	255, 999, 1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.