Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001315

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Reverse (-)

23689 .. 23990

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTTTTTTATACCTCTGTTATGCAGCCTTTAGATGAAGCATATATTGAGATCTTGTATCATTTTGGTGATTCCGAAACATCAACTTTCTCCATCCACAATCTTCTTCAGGCTGGAAAGGCTTATGAACTCGCTGCCGGATCATGGGTTGGCCCATATGCCATGTGCCGCACTTGGGAGACTCTAGTACGATGTAGGAGAGAAGTAACTGACCTTGATGATCAGCCACTTCCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

80

Amino Acids

9.13

Weight (kDa)

4.53

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	12 - 68	4.5e-12	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	144, 175
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	25, 134
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	37, 121
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	3 cut(s)	26, 135, 169
BlsI	GCNGC	3 cut(s)	27, 136, 170
BmgT120I	GGNCC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 175
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	144, 175
BseXI	GCAGC	2 cut(s)	37, 121
BshFI	GGCC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	144, 175
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	51, 140, 220
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	148
BssMI	GATC	3 cut(s)	51, 140, 220
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	3 cut(s)	54, 143, 223
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	51, 140, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	37, 121
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	144, 163
CviJI	RGCY	5 cut(s)	28, 113, 122, 153, 226
CviKI_1	RGCY	5 cut(s)	28, 113, 122, 153, 226
CviQI	GTAC	1 cut(s)	188
DpnI	GATC	3 cut(s)	53, 142, 222
DpnII	GATC	3 cut(s)	51, 140, 220
Eco57I	CTGAAG	1 cut(s)	92
FaeI	CATG	2 cut(s)	147, 166
FaiI	YATR	9 cut(s)	12, 23, 43, 45, 126, 145, 157, 159, 164
FatI	CATG	2 cut(s)	143, 162
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	26, 135, 169
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	26, 135, 169
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	3 cut(s)	26, 135, 169
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	147, 166
HinfI	GANTC	2 cut(s)	71, 181
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	147, 166
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	51, 140, 220
LpnPI	CCDG	3 cut(s)	95, 99, 151
Lsp1109I	GCAGC	2 cut(s)	37, 121
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	53, 142, 222
MboI	GATC	3 cut(s)	51, 140, 220
MboII	GAAGA	2 cut(s)	95, 98
MflI	RGATCY	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	51, 140, 220
NlaIII	CATG	2 cut(s)	147, 166
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	27, 136, 170
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	66
SatI	GCNGC	3 cut(s)	26, 135, 169
Sau3AI	GATC	3 cut(s)	51, 140, 220
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	175
SetI	ASST	2 cut(s)	17, 216
SmiMI	CAYNNNNRTG	1 cut(s)	66
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	185
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	25, 134
TspDTI	ATGAA	2 cut(s)	51, 141
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.