Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Reverse (-)

299132 .. 300003

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAACCGGGAGGAGGAGACATGCCCCAACTGGGTGTCCTTCAGCAGATAGAAAAGGATTTTGGTTCCTTTACTAATTTCAGAGAGAAGTTTACAGAAGCAGCACTTACACTATTTGGGTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAAACGACTTCAGATAATTAAAACTTCAAATGCCATTTGCCCAACTGTTTGGGGTGATGTACCTATAATCAGTTTGGATCTGTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAGAGGAAAGTACGTGGATGCGTTTATGAACAATCTTGTGTCTTGGAATGCGGCAATGGCACGCCTGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

5.36

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_C	PF02777	13 - 111	8.1e-37	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	26, 149
AfaI	GTAC	2 cut(s)	216, 284
AfiI	CCNNNNNNNGG	2 cut(s)	14, 32
AgsI	TTSAA	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AloI	GAACNNNNNNTCC	1 cut(s)	363
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	102, 324
BlsI	GCNGC	2 cut(s)	103, 325
Bme1390I	CCNGG	2 cut(s)	9, 338
BmeT110I	CYCGRG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	9, 338
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 32
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	295, 378
BseLI	CCNNNNNNNGG	2 cut(s)	14, 32
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	14, 32
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	246, 334
BstDEI	CTNAG	2 cut(s)	348, 390
BstF5I	GGATG	2 cut(s)	295, 378
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	2 cut(s)	25, 248
BstSCI	CCNGG	2 cut(s)	7, 336
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	295, 378
Cac8I	GCNNGC	2 cut(s)	246, 334
Csp6I	GTAC	2 cut(s)	215, 283
CviAII	CATG	2 cut(s)	22, 245
CviJI	RGCY	6 cut(s)	126, 136, 341, 347, 353, 389
CviKI_1	RGCY	6 cut(s)	126, 136, 341, 347, 353, 389
CviQI	GTAC	2 cut(s)	215, 283
DdeI	CTNAG	2 cut(s)	348, 390
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	2 cut(s)	144, 366
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	26, 149
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	25, 248
FaiI	YATR	4 cut(s)	23, 221, 246, 299
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	2 cut(s)	21, 244
Fnu4HI	GCNGC	2 cut(s)	102, 324
FokI	GGATG	2 cut(s)	302, 365
Fsp4HI	GCNGC	2 cut(s)	102, 324
GluI	GCNGC	2 cut(s)	102, 324
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	25, 248
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	83, 168
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	2 cut(s)	348, 390
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	25, 248
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	17, 21, 108, 112, 242, 323, 350
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	3 cut(s)	76, 171, 361
MnlI	CCTC	4 cut(s)	5, 8, 269, 343
MseI	TTAA	3 cut(s)	143, 174, 365
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	9, 338
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	25, 248
NlaIV	GGNNCC	1 cut(s)	67
NspI	RCATGY	2 cut(s)	25, 248
PaeI	GCATGC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PctI	GAATGC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	103, 325
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	216, 284
RsaNI	GTAC	2 cut(s)	215, 283
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	143, 174, 365
SatI	GCNGC	2 cut(s)	102, 324
Sau3AI	GATC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	9, 338
SetI	ASST	4 cut(s)	220, 288, 349, 376
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	76, 171, 361
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	7, 336
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	76, 171, 361
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	143, 174, 365
Tru9I	TTAA	3 cut(s)	143, 174, 365
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	25, 248
XhoI	CTCGAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.