SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g01030 |
| rosa_multiflora | Rmu_sc0003226.1_g000058 |
| rosa_samantha | Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 376 |
| AciI | CCGC | 5 cut(s) | 60, 107, 110, 452, 491 |
| AclWI | GGATC | 1 cut(s) | 271 |
| AcyI | GRCGYC | 1 cut(s) | 267 |
| AgsI | TTSAA | 2 cut(s) | 25, 67 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 511, 543 |
| AluBI | AGCT | 3 cut(s) | 157, 469, 509 |
| AluI | AGCT | 3 cut(s) | 157, 469, 509 |
| Alw21I | GWGCWC | 1 cut(s) | 471 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| AlwI | GGATC | 1 cut(s) | 271 |
| AoxI | GGCC | 2 cut(s) | 104, 290 |
| ApeKI | GCWGC | 2 cut(s) | 488, 506 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AsuC2I | CCSGG | 1 cut(s) | 281 |
| BanII | GRGCYC | 1 cut(s) | 471 |
| Bbv12I | GWGCWC | 1 cut(s) | 471 |
| BbvI | GCAGC | 2 cut(s) | 500, 518 |
| BccI | CCATC | 1 cut(s) | 332 |
| BcnI | CCSGG | 1 cut(s) | 281 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BfaI | CTAG | 1 cut(s) | 288 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BfuAI | ACCTGC | 1 cut(s) | 376 |
| BisI | GCNGC | 4 cut(s) | 107, 110, 489, 507 |
| BlsI | GCNGC | 4 cut(s) | 108, 111, 490, 508 |
| Bme1390I | CCNGG | 1 cut(s) | 281 |
| BmrFI | CCNGG | 1 cut(s) | 281 |
| BmrI | ACTGGG | 1 cut(s) | 52 |
| BmuI | ACTGGG | 1 cut(s) | 52 |
| BpuEI | CTTGAG | 1 cut(s) | 68 |
| BpuMI | CCSGG | 1 cut(s) | 281 |
| BsaHI | GRCGYC | 1 cut(s) | 267 |
| BsaJI | CCNNGG | 2 cut(s) | 101, 472 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bse1I | ACTGG | 3 cut(s) | 47, 186, 216 |
| BseDI | CCNNGG | 2 cut(s) | 101, 472 |
| BseGI | GGATG | 1 cut(s) | 385 |
| BseNI | ACTGG | 3 cut(s) | 47, 186, 216 |
| BseRI | GAGGAG | 1 cut(s) | 407 |
| BseXI | GCAGC | 2 cut(s) | 500, 518 |
| Bsh1285I | CGRYCG | 1 cut(s) | 117 |
| BshFI | GGCC | 2 cut(s) | 106, 292 |
| BsiEI | CGRYCG | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 1 cut(s) | 471 |
| BsiSI | CCGG | 1 cut(s) | 281 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 2 cut(s) | 106, 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 471 |
| Bsp143I | GATC | 4 cut(s) | 114, 134, 276, 294 |
| BspACI | CCGC | 5 cut(s) | 60, 107, 110, 452, 491 |
| BspANI | GGCC | 2 cut(s) | 106, 292 |
| BspMAI | CTGCAG | 1 cut(s) | 490 |
| BspMI | ACCTGC | 1 cut(s) | 376 |
| BspPI | GGATC | 1 cut(s) | 271 |
| BsrI | ACTGG | 3 cut(s) | 47, 186, 216 |
| BssECI | CCNNGG | 2 cut(s) | 101, 472 |
| BssMI | GATC | 4 cut(s) | 114, 134, 276, 294 |
| BssNI | GRCGYC | 1 cut(s) | 267 |
| BssT1I | CCWWGG | 1 cut(s) | 101 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstACI | GRCGYC | 1 cut(s) | 267 |
| BstDSI | CCRYGG | 1 cut(s) | 472 |
| BstF5I | GGATG | 1 cut(s) | 385 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 4 cut(s) | 117, 137, 279, 297 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 4 cut(s) | 114, 134, 276, 294 |
| BstMCI | CGRYCG | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 154 |
| BstSCI | CCNGG | 1 cut(s) | 279 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 2 cut(s) | 500, 518 |
| BstX2I | RGATCY | 1 cut(s) | 276 |
| BstYI | RGATCY | 1 cut(s) | 276 |
| BsuRI | GGCC | 2 cut(s) | 106, 292 |
| BtgI | CCRYGG | 1 cut(s) | 472 |
| BtgZI | GCGATG | 1 cut(s) | 351 |
| BtsCI | GGATG | 1 cut(s) | 385 |
| BveI | ACCTGC | 1 cut(s) | 376 |
| CfoI | GCGC | 1 cut(s) | 9 |
| CseI | GACGC | 3 cut(s) | 181, 223, 275 |
| DpnI | GATC | 4 cut(s) | 116, 136, 278, 296 |
| DpnII | GATC | 4 cut(s) | 114, 134, 276, 294 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| EciI | GGCGGA | 1 cut(s) | 49 |
| Ecl136II | GAGCTC | 1 cut(s) | 469 |
| Eco130I | CCWWGG | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 1 cut(s) | 471 |
| Eco53kI | GAGCTC | 1 cut(s) | 469 |
| EcoICRI | GAGCTC | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 101 |
| EcoT38I | GRGCYC | 1 cut(s) | 471 |
| ErhI | CCWWGG | 1 cut(s) | 101 |
| Fnu4HI | GCNGC | 4 cut(s) | 107, 110, 489, 507 |
| FokI | GGATG | 1 cut(s) | 392 |
| FriOI | GRGCYC | 1 cut(s) | 471 |
| Fsp4HI | GCNGC | 4 cut(s) | 107, 110, 489, 507 |
| FspBI | CTAG | 1 cut(s) | 288 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 4 cut(s) | 107, 110, 489, 507 |
| HaeIII | GGCC | 2 cut(s) | 106, 292 |
| HapII | CCGG | 1 cut(s) | 281 |
| HgaI | GACGC | 3 cut(s) | 181, 223, 275 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1I | GRCGYC | 1 cut(s) | 267 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 1 cut(s) | 363 |
| HindII | GTYRAC | 1 cut(s) | 363 |
| HinfI | GANTC | 4 cut(s) | 119, 182, 224, 359 |
| HpaII | CCGG | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 2 cut(s) | 305, 363 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 134, 229, 246 |
| Hpy188III | TCNNGA | 2 cut(s) | 85, 196 |
| Hpy8I | GTNNAC | 2 cut(s) | 305, 363 |
| Hpy99I | CGWCG | 5 cut(s) | 20, 197, 239, 275, 410 |
| HpyAV | CCTTC | 3 cut(s) | 73, 139, 415 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 430, 488 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 154 |
| Hsp92I | GRCGYC | 1 cut(s) | 267 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 4 cut(s) | 114, 134, 276, 294 |
| LmnI | GCTCC | 1 cut(s) | 474 |
| LpnPI | CCDG | 5 cut(s) | 28, 197, 199, 294, 371 |
| Lsp1109I | GCAGC | 2 cut(s) | 500, 518 |
| MaeI | CTAG | 1 cut(s) | 288 |
| MalI | GATC | 4 cut(s) | 116, 136, 278, 296 |
| MboI | GATC | 4 cut(s) | 114, 134, 276, 294 |
| MboII | GAAGA | 1 cut(s) | 386 |
| MflI | RGATCY | 1 cut(s) | 276 |
| MhlI | GDGCHC | 1 cut(s) | 471 |
| MluCI | AATT | 1 cut(s) | 499 |
| MlyI | GAGTC | 3 cut(s) | 128, 218, 368 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MseI | TTAA | 1 cut(s) | 201 |
| MspA1I | CMGCKG | 1 cut(s) | 491 |
| MspI | CCGG | 1 cut(s) | 281 |
| MspR9I | CCNGG | 1 cut(s) | 281 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 154 |
| NciI | CCSGG | 1 cut(s) | 281 |
| NdeII | GATC | 4 cut(s) | 114, 134, 276, 294 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 225, 267, 333 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PfoI | TCCNGGA | 1 cut(s) | 279 |
| PkrI | GCNGC | 4 cut(s) | 108, 111, 490, 508 |
| Ple19I | CGATCG | 1 cut(s) | 117 |
| PleI | GAGTC | 3 cut(s) | 127, 218, 367 |
| PpsI | GAGTC | 3 cut(s) | 127, 218, 367 |
| Psp124BI | GAGCTC | 1 cut(s) | 471 |
| PstI | CTGCAG | 1 cut(s) | 490 |
| PsuI | RGATCY | 1 cut(s) | 276 |
| PvuI | CGATCG | 1 cut(s) | 117 |
| SacI | GAGCTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 4 cut(s) | 107, 110, 489, 507 |
| Sau3AI | GATC | 4 cut(s) | 114, 134, 276, 294 |
| SchI | GAGTC | 3 cut(s) | 128, 218, 368 |
| ScrFI | CCNGG | 1 cut(s) | 281 |
| SduI | GDGCHC | 1 cut(s) | 471 |
| SetI | ASST | 5 cut(s) | 14, 159, 390, 471, 511 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 1 cut(s) | 499 |
| SsiI | CCGC | 5 cut(s) | 60, 107, 110, 452, 491 |
| SspI | AATATT | 1 cut(s) | 355 |
| SspMI | CTAG | 1 cut(s) | 288 |
| SstI | GAGCTC | 1 cut(s) | 471 |
| StyD4I | CCNGG | 1 cut(s) | 279 |
| StyI | CCWWGG | 1 cut(s) | 101 |
| TaqI | TCGA | 6 cut(s) | 15, 117, 180, 195, 321, 482 |
| TasI | AATT | 1 cut(s) | 499 |
| TauI | GCSGC | 2 cut(s) | 109, 112 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TseI | GCWGC | 2 cut(s) | 488, 506 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 288 |