Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018932

Physical Location & Seq

Genomic Coordinates Forward (+)

28231648 .. 28234168

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAGCGCAGCCTCGACCATTTCAAAATCTCCGACGACGAGTGGGAGGAGCACTCCTCCTCCTTCAAGCCCTCTCGCGTCTTCAAGAAGTTGCGCACCCCGACGCCGACGGCAATCGAGTCATTCACCTACCGGAAGTGCCGAGACGACGACGTCGTCGAGGAGGTCCGCCGGCCGGTGACACGTGGAGGGAGGTTTGTGGTCGAAGACGAGGATAGCGACGGGGATTGGCCTCCTCTTCGCTTCAGATTCGAGTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTTACTACTACTTCCAAATCCCAATCCCTTTCCTCTATCTCACAATGCACTCACAACTCCAACTCATTTCGGCTCTACACATGCTCTACATCATCTCTCAACTTCCACAGGAGGCCAAATTCCATCTGGGTTCCCCAGTTGGTGTGGGTTTCACCGGTTCTTTGGCTACATCGCGTCTAAAGCTCGGGGACCACAGGGATGGAATAAAAGGATGTTGAAAGCAAAATCATTATTGATGAAGAAGACTAGGAATAAGCCATCTGCCAAAAATGTTACAACAGAGTTGCAACTAGAGCATCCCTCGCAACAACAGAAGAGGCAGCCACAACAGCCAGGAAATAGACAGCCACAAGACCCAGCAAAGAGACAGCCACAACAAACAGCAAAGAGGCAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

233

Amino Acids

26.66

Weight (kDa)

10.13

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018932)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01030
rosa_multiflora	Rmu_sc0003226.1_g000058
rosa_samantha	Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	152, 155
AatII	GACGTC	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	95
AccII	CGCG	2 cut(s)	78, 476
AciI	CCGC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	229
AcvI	CACGTG	1 cut(s)	185
AcyI	GRCGYC	2 cut(s)	104, 153
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	25, 67, 85, 299, 520
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	138, 261, 661
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	3 cut(s)	173, 230, 415
ApeKI	GCWGC	3 cut(s)	9, 622, 694
ApoI	RAATTY	1 cut(s)	420
AsiGI	ACCGGT	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	9, 96
AspS9I	GGNCC	2 cut(s)	166, 491
AsuHPI	GGTGA	3 cut(s)	118, 190, 446
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	2 cut(s)	166, 491
BbrPI	CACGTG	1 cut(s)	185
BbsI	GAAGAC	3 cut(s)	73, 213, 551
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	21, 634
BccI	CCATC	3 cut(s)	433, 495, 568
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	3 cut(s)	138, 261, 661
BfaI	CTAG	2 cut(s)	549, 593
BisI	GCNGC	3 cut(s)	10, 623, 695
BlsI	GCNGC	3 cut(s)	11, 624, 696
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	2 cut(s)	166, 491
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	166, 491
BmiI	GGNNCC	2 cut(s)	434, 492
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	3 cut(s)	73, 213, 551
BplI	GAGNNNNNCTC	6 cut(s)	38, 70, 41, 73, 587, 619
BsaAI	YACGTR	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	104, 153
BsaWI	WCCGGW	2 cut(s)	132, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	3 cut(s)	171, 175, 456
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	636
BseGI	GGATG	3 cut(s)	506, 519, 598
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	5 cut(s)	46, 49, 62, 176, 225
BseX3I	CGGCCG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	21, 634
BseYI	CCCAGC	1 cut(s)	658
Bsh1236I	CGCG	2 cut(s)	78, 476
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	3 cut(s)	175, 232, 417
BshTI	ACCGGT	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	4 cut(s)	133, 172, 176, 457
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	138, 261, 661
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	175, 232, 417
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	3 cut(s)	175, 232, 417
BspFNI	CGCG	2 cut(s)	78, 476
BspLI	GGNNCC	2 cut(s)	434, 492
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	3 cut(s)	171, 175, 456
BsrI	ACTGG	1 cut(s)	438
BssAI	RCCGGY	3 cut(s)	171, 175, 456
BssNI	GRCGYC	2 cut(s)	104, 153
Bst2UI	CCWGG	1 cut(s)	636
Bst6I	CTCTTC	3 cut(s)	243, 288, 611
BstACI	GRCGYC	2 cut(s)	104, 153
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	506, 519, 598
BstFNI	CGCG	2 cut(s)	78, 476
BstHHI	GCGC	2 cut(s)	9, 96
BstMAI	GTCTC	3 cut(s)	138, 261, 661
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 595, 604, 631
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	634
BstUI	CGCG	2 cut(s)	78, 476
BstV1I	GCAGC	2 cut(s)	21, 634
BstV2I	GAAGAC	3 cut(s)	73, 213, 551
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstZI	CGGCCG	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	175, 232, 417
BtgZI	GCGATG	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	506, 519, 598
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	2 cut(s)	9, 96
Cfr10I	RCCGGY	3 cut(s)	171, 175, 456
Cfr13I	GGNCC	2 cut(s)	166, 491
CseI	GACGC	3 cut(s)	67, 112, 465
CspAI	ACCGGT	1 cut(s)	456
CviAII	CATG	1 cut(s)	383
DrdI	GACNNNNNNGTC	2 cut(s)	152, 155
DseDI	GACNNNNNNGTC	2 cut(s)	152, 155
EaeI	YGGCCR	1 cut(s)	173
EagI	CGGCCG	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	243, 288, 611
EarI	CTCTTC	3 cut(s)	243, 288, 611
EciI	GGCGGA	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	166, 491
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	229
Eco72I	CACGTG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	634
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	386
FaiI	YATR	2 cut(s)	384, 700
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	10, 623, 695
FokI	GGATG	3 cut(s)	513, 526, 585
Fsp4HI	GCNGC	3 cut(s)	10, 623, 695
FspBI	CTAG	2 cut(s)	549, 593
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	2 cut(s)	8, 95
GluI	GCNGC	3 cut(s)	10, 623, 695
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	3 cut(s)	175, 232, 417
HapII	CCGG	4 cut(s)	133, 172, 176, 457
HgaI	GACGC	3 cut(s)	67, 112, 465
HhaI	GCGC	2 cut(s)	9, 96
Hin1I	GRCGYC	2 cut(s)	104, 153
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	2 cut(s)	7, 94
HinP1I	GCGC	2 cut(s)	7, 94
HinfI	GANTC	3 cut(s)	119, 249, 254
HpaII	CCGG	4 cut(s)	133, 172, 176, 457
HphI	GGTGA	3 cut(s)	118, 190, 446
Hpy188I	TCNGA	2 cut(s)	34, 248
Hpy188III	TCNNGA	1 cut(s)	85
Hpy99I	CGWCG	9 cut(s)	38, 41, 106, 112, 152, 155, 158, 161, 224
HpyAV	CCTTC	2 cut(s)	73, 302
HpyCH4IV	ACGT	2 cut(s)	153, 184
HpyCH4V	TGCA	3 cut(s)	266, 350, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 595, 604, 631
HpySE526I	ACGT	2 cut(s)	153, 184
Hsp92I	GRCGYC	2 cut(s)	104, 153
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	2 cut(s)	7, 94
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	2 cut(s)	21, 634
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	549, 593
MaeII	ACGT	2 cut(s)	153, 184
MaeIII	GTNAC	3 cut(s)	178, 303, 574
MboII	GAAGA	8 cut(s)	73, 218, 230, 275, 287, 553, 556, 628
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	2 cut(s)	299, 420
MlyI	GAGTC	2 cut(s)	128, 263
MmeI	TCCRAC	2 cut(s)	57, 386
MroNI	GCCGGC	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	499
MspI	CCGG	4 cut(s)	133, 172, 176, 457
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	2 cut(s)	78, 476
MwoI	GCNNNNNNNGC	4 cut(s)	482, 595, 604, 631
NaeI	GCCGGC	1 cut(s)	173
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	2 cut(s)	434, 492
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	95
NspI	RCATGY	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 156, 216
PdiI	GCCGGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	2 cut(s)	152, 155
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	11, 624, 696
PleI	GAGTC	2 cut(s)	127, 262
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	2 cut(s)	127, 262
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	634
PspCI	CACGTG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	434, 492
PspPI	GGNCC	2 cut(s)	166, 491
PsyI	GACNNNGTC	2 cut(s)	152, 155
RseI	CAYNNNNRTG	1 cut(s)	499
SatI	GCNGC	3 cut(s)	10, 623, 695
Sau96I	GGNCC	2 cut(s)	166, 491
SchI	GAGTC	2 cut(s)	128, 263
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	6 cut(s)	131, 156, 168, 187, 197, 487
SfaNI	GCATC	1 cut(s)	607
SinI	GGWCC	2 cut(s)	166, 491
SmiMI	CAYNNNNRTG	1 cut(s)	499
Sse9I	AATT	2 cut(s)	299, 420
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	549, 593
StyD4I	CCNGG	1 cut(s)	634
TaiI	ACGT	2 cut(s)	156, 187
TaqI	TCGA	5 cut(s)	15, 117, 159, 204, 252
TasI	AATT	2 cut(s)	299, 420
TfiI	GAWTC	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	9, 622, 694
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 554
Tth111I	GACNNNGTC	2 cut(s)	152, 155
VpaK11BI	GGWCC	2 cut(s)	166, 491
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	549, 593
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.