SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g01030 |
| rosa_multiflora | Rmu_sc0003226.1_g000058 |
| rosa_samantha | Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 233, 236 |
| AatII | GACGTC | 1 cut(s) | 237 |
| AccII | CGCG | 2 cut(s) | 78, 265 |
| AciI | CCGC | 3 cut(s) | 76, 107, 250 |
| AcoI | YGGCCR | 1 cut(s) | 254 |
| AcyI | GRCGYC | 3 cut(s) | 98, 104, 234 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 256 |
| AflIII | ACRYGT | 1 cut(s) | 263 |
| AgsI | TTSAA | 1 cut(s) | 67 |
| Alw21I | GWGCWC | 1 cut(s) | 54 |
| Alw26I | GTCTC | 2 cut(s) | 151, 268 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 2 cut(s) | 9, 284 |
| AspLEI | GCGC | 2 cut(s) | 9, 141 |
| AspS9I | GGNCC | 1 cut(s) | 247 |
| AsuHPI | GGTGA | 1 cut(s) | 271 |
| AsuII | TTCGAA | 1 cut(s) | 24 |
| AvaII | GGWCC | 1 cut(s) | 247 |
| Bbv12I | GWGCWC | 1 cut(s) | 54 |
| BbvI | GCAGC | 2 cut(s) | 21, 271 |
| BcoDI | GTCTC | 2 cut(s) | 151, 268 |
| BfoI | RGCGCY | 1 cut(s) | 142 |
| BisI | GCNGC | 3 cut(s) | 10, 107, 285 |
| BlsI | GCNGC | 3 cut(s) | 11, 108, 286 |
| Bme18I | GGWCC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 1 cut(s) | 247 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 38, 70, 41, 73 |
| Bpu14I | TTCGAA | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 1 cut(s) | 68 |
| BsaHI | GRCGYC | 3 cut(s) | 98, 104, 234 |
| BsaWI | WCCGGW | 1 cut(s) | 132 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 44, 74, 143, 173 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 256 |
| Bse118I | RCCGGY | 3 cut(s) | 109, 252, 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BseRI | GAGGAG | 4 cut(s) | 46, 49, 62, 257 |
| BseX3I | CGGCCG | 1 cut(s) | 254 |
| BseXI | GCAGC | 2 cut(s) | 21, 271 |
| Bsh1236I | CGCG | 2 cut(s) | 78, 265 |
| Bsh1285I | CGRYCG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BsiEI | CGRYCG | 1 cut(s) | 257 |
| BsiHKAI | GWGCWC | 1 cut(s) | 54 |
| BsiSI | CCGG | 4 cut(s) | 110, 133, 253, 257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BsmAI | GTCTC | 2 cut(s) | 151, 268 |
| BsmI | GAATGC | 1 cut(s) | 286 |
| BsnI | GGCC | 1 cut(s) | 256 |
| Bsp119I | TTCGAA | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| BspACI | CCGC | 3 cut(s) | 76, 107, 250 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspFNI | CGCG | 2 cut(s) | 78, 265 |
| BspT104I | TTCGAA | 1 cut(s) | 24 |
| BsrFI | RCCGGY | 3 cut(s) | 109, 252, 256 |
| BssAI | RCCGGY | 3 cut(s) | 109, 252, 256 |
| BssNI | GRCGYC | 3 cut(s) | 98, 104, 234 |
| BstACI | GRCGYC | 3 cut(s) | 98, 104, 234 |
| BstBI | TTCGAA | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 111, 254 |
| BstFNI | CGCG | 2 cut(s) | 78, 265 |
| BstH2I | RGCGCY | 1 cut(s) | 142 |
| BstHHI | GCGC | 2 cut(s) | 9, 141 |
| BstMAI | GTCTC | 2 cut(s) | 151, 268 |
| BstMCI | CGRYCG | 1 cut(s) | 257 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 106, 262 |
| BstUI | CGCG | 2 cut(s) | 78, 265 |
| BstV1I | GCAGC | 2 cut(s) | 21, 271 |
| BstZI | CGGCCG | 1 cut(s) | 254 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| Cac8I | GCNNGC | 2 cut(s) | 111, 254 |
| CfoI | GCGC | 2 cut(s) | 9, 141 |
| Cfr10I | RCCGGY | 3 cut(s) | 109, 252, 256 |
| Cfr13I | GGNCC | 1 cut(s) | 247 |
| CseI | GACGC | 5 cut(s) | 67, 106, 112, 157, 271 |
| CviJI | RGCY | 3 cut(s) | 12, 70, 256 |
| CviKI_1 | RGCY | 3 cut(s) | 12, 70, 256 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 233, 236 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 233, 236 |
| EaeI | YGGCCR | 1 cut(s) | 254 |
| EagI | CGGCCG | 1 cut(s) | 254 |
| EciI | GGCGGA | 1 cut(s) | 239 |
| EclXI | CGGCCG | 1 cut(s) | 254 |
| Eco47I | GGWCC | 1 cut(s) | 247 |
| Eco52I | CGGCCG | 1 cut(s) | 254 |
| FauI | CCCGC | 1 cut(s) | 83 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 107, 285 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 107, 285 |
| GlaI | GCGC | 2 cut(s) | 8, 140 |
| GluI | GCNGC | 3 cut(s) | 10, 107, 285 |
| HaeII | RGCGCY | 1 cut(s) | 142 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| HapII | CCGG | 4 cut(s) | 110, 133, 253, 257 |
| HgaI | GACGC | 5 cut(s) | 67, 106, 112, 157, 271 |
| HhaI | GCGC | 2 cut(s) | 9, 141 |
| Hin1I | GRCGYC | 3 cut(s) | 98, 104, 234 |
| Hin6I | GCGC | 2 cut(s) | 7, 139 |
| HinP1I | GCGC | 2 cut(s) | 7, 139 |
| HinfI | GANTC | 4 cut(s) | 119, 144, 158, 185 |
| HpaII | CCGG | 4 cut(s) | 110, 133, 253, 257 |
| HphI | GGTGA | 1 cut(s) | 271 |
| Hpy166II | GTNNAC | 1 cut(s) | 269 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 151, 163, 190 |
| Hpy188III | TCNNGA | 3 cut(s) | 85, 172, 211 |
| Hpy8I | GTNNAC | 1 cut(s) | 269 |
| HpyAV | CCTTC | 2 cut(s) | 73, 133 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 106, 262 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Hsp92I | GRCGYC | 3 cut(s) | 98, 104, 234 |
| HspAI | GCGC | 2 cut(s) | 7, 139 |
| KroI | GCCGGC | 2 cut(s) | 109, 252 |
| KroNI | GCCGGC | 2 cut(s) | 111, 254 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 4 cut(s) | 123, 146, 266, 270 |
| Lsp1109I | GCAGC | 2 cut(s) | 21, 271 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MaeIII | GTNAC | 1 cut(s) | 259 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MluI | ACGCGT | 1 cut(s) | 263 |
| MlyI | GAGTC | 3 cut(s) | 128, 152, 153 |
| MmeI | TCCRAC | 2 cut(s) | 57, 174 |
| MroNI | GCCGGC | 2 cut(s) | 109, 252 |
| MseI | TTAA | 2 cut(s) | 177, 292 |
| MspI | CCGG | 4 cut(s) | 110, 133, 253, 257 |
| Mva1269I | GAATGC | 1 cut(s) | 286 |
| MvnI | CGCG | 2 cut(s) | 78, 265 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 106, 262 |
| NaeI | GCCGGC | 2 cut(s) | 111, 254 |
| NgoMIV | GCCGGC | 2 cut(s) | 109, 252 |
| NmeAIII | GCCGAG | 1 cut(s) | 167 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| NspV | TTCGAA | 1 cut(s) | 24 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 21, 30, 98, 159, 189, 198, 234, 237 |
| PctI | GAATGC | 1 cut(s) | 286 |
| PdiI | GCCGGC | 2 cut(s) | 111, 254 |
| PfeI | GAWTC | 1 cut(s) | 185 |
| PflFI | GACNNNGTC | 2 cut(s) | 233, 236 |
| PkrI | GCNGC | 3 cut(s) | 11, 108, 286 |
| PleI | GAGTC | 3 cut(s) | 127, 152, 152 |
| PpsI | GAGTC | 3 cut(s) | 127, 152, 152 |
| PspPI | GGNCC | 1 cut(s) | 247 |
| PsyI | GACNNNGTC | 2 cut(s) | 233, 236 |
| SaqAI | TTAA | 2 cut(s) | 177, 292 |
| SatI | GCNGC | 3 cut(s) | 10, 107, 285 |
| Sau96I | GGNCC | 1 cut(s) | 247 |
| SchI | GAGTC | 3 cut(s) | 128, 152, 153 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SetI | ASST | 3 cut(s) | 210, 237, 249 |
| SfuI | TTCGAA | 1 cut(s) | 24 |
| SinI | GGWCC | 1 cut(s) | 247 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| SsiI | CCGC | 3 cut(s) | 76, 107, 250 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 6 cut(s) | 15, 24, 92, 117, 171, 240 |
| TauI | GCSGC | 1 cut(s) | 109 |
| TfiI | GAWTC | 1 cut(s) | 185 |
| Tru1I | TTAA | 2 cut(s) | 177, 292 |
| Tru9I | TTAA | 2 cut(s) | 177, 292 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| TseI | GCWGC | 2 cut(s) | 9, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| Tth111I | GACNNNGTC | 2 cut(s) | 233, 236 |
| VpaK11BI | GGWCC | 1 cut(s) | 247 |
| ZraI | GACGTC | 1 cut(s) | 235 |