Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018932

Physical Location & Seq

Genomic Coordinates Forward (+)

3951461 .. 3953793

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGCGCAGCCTCAACCAATTTGAGCACTCCTCCTCCTTCAAGCCCTCCAGCGTCCTCAAGAAGTCGCGCACCCCGACGCCGGCGGCAATCGAGTCATTCCCCTACCGGAAGCGCCTAGTCTCTGACAACGACTCTGATTGCGTCGAGATTAAGGACGATTCGGACGATGATTGCGTGGAGATCAAGAACAATTTGGAGGACGACGACGTCGTCGAGGAGGTCCGCCGGCCGGTGACGCGTGGACGGAGGTTTGTGGTCGAAGACGAGGATAGCGACGGGGATTGGCCTCCTCTTCGCTTCGGATTCGAGTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTTACTACTACTTCCAAATCCCAATCCCTTTCCTCTATCTCACAATGCACTCACAACTCCAACTCATTTCGGCTCTACACATGCTCTACATCATCTCTCAACTTCCACAGGAGGCCAAATTCCATCTGGCCATCTGGGTTCCCCAGTTCTTGGTGTGGGTTTCACTGGTTCTTTGGCTACATCGCGTCTAAAGCTCGGGGACCACAGGGATGGAATAAAAGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

195

Amino Acids

21.39

Weight (kDa)

5.72

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018932)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01030
rosa_multiflora	Rmu_sc0003226.1_g000058
rosa_samantha	Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	209, 212
AatII	GACGTC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	3 cut(s)	70, 241, 544
AciI	CCGC	2 cut(s)	86, 226
AcoI	YGGCCR	2 cut(s)	230, 487
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	2 cut(s)	80, 210
AfiI	CCNNNNNNNGG	3 cut(s)	82, 232, 509
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	43, 356
AluBI	AGCT	1 cut(s)	553
AluI	AGCT	1 cut(s)	553
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	127, 318
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	230, 287, 472, 487
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	477
AspLEI	GCGC	3 cut(s)	9, 72, 117
AspS9I	GGNCC	2 cut(s)	223, 559
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	223, 559
BalI	TGGCCA	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	3 cut(s)	490, 498, 563
BcoDI	GTCTC	2 cut(s)	127, 318
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	10, 87
BlsI	GCNGC	2 cut(s)	11, 88
Bme18I	GGWCC	2 cut(s)	223, 559
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	223, 559
BmiI	GGNNCC	2 cut(s)	499, 560
BmrI	ACTGGG	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	80, 210
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 232, 509
Bse118I	RCCGGY	3 cut(s)	82, 228, 232
Bse1I	ACTGG	2 cut(s)	503, 529
Bse3DI	GCAATG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	574, 587
BseLI	CCNNNNNNNGG	3 cut(s)	82, 232, 509
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	503, 529
BseRI	GAGGAG	4 cut(s)	22, 25, 233, 282
BseX3I	CGGCCG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	3 cut(s)	70, 241, 544
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	232, 289, 474, 489
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	4 cut(s)	83, 109, 229, 233
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	82, 232, 509
BsmAI	GTCTC	2 cut(s)	127, 318
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	232, 289, 474, 489
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	86, 226
BspANI	GGCC	4 cut(s)	232, 289, 474, 489
BspFNI	CGCG	3 cut(s)	70, 241, 544
BspLI	GGNNCC	2 cut(s)	499, 560
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	3 cut(s)	82, 228, 232
BsrI	ACTGG	2 cut(s)	503, 529
BssAI	RCCGGY	3 cut(s)	82, 228, 232
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	2 cut(s)	80, 210
Bst6I	CTCTTC	2 cut(s)	300, 345
BstACI	GRCGYC	2 cut(s)	80, 210
BstC8I	GCNNGC	2 cut(s)	84, 230
BstF5I	GGATG	2 cut(s)	574, 587
BstFNI	CGCG	3 cut(s)	70, 241, 544
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	3 cut(s)	9, 72, 117
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	2 cut(s)	127, 318
BstMBI	GATC	1 cut(s)	183
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 550
BstNSI	RCATGY	1 cut(s)	443
BstUI	CGCG	3 cut(s)	70, 241, 544
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstZI	CGGCCG	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	232, 289, 474, 489
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	574, 587
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	84, 230
CfoI	GCGC	3 cut(s)	9, 72, 117
Cfr10I	RCCGGY	3 cut(s)	82, 228, 232
Cfr13I	GGNCC	2 cut(s)	223, 559
CseI	GACGC	5 cut(s)	43, 88, 133, 247, 533
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	9 cut(s)	12, 46, 232, 289, 432, 474, 489, 536, 553
CviKI_1	RGCY	9 cut(s)	12, 46, 232, 289, 432, 474, 489, 536, 553
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	2 cut(s)	209, 212
DseDI	GACNNNNNNGTC	2 cut(s)	209, 212
EaeI	YGGCCR	2 cut(s)	230, 487
EagI	CGGCCG	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	300, 345
EarI	CTCTTC	2 cut(s)	300, 345
EciI	GGCGGA	1 cut(s)	215
EclXI	CGGCCG	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	223, 559
Eco52I	CGGCCG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	554
FaeI	CATG	1 cut(s)	443
FaiI	YATR	1 cut(s)	441
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	10, 87
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	10, 87
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	3 cut(s)	8, 71, 116
GluI	GCNGC	2 cut(s)	10, 87
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	4 cut(s)	232, 289, 474, 489
HapII	CCGG	4 cut(s)	83, 109, 229, 233
HgaI	GACGC	5 cut(s)	43, 88, 133, 247, 533
HhaI	GCGC	3 cut(s)	9, 72, 117
Hin1I	GRCGYC	2 cut(s)	80, 210
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	3 cut(s)	7, 70, 115
HinP1I	GCGC	3 cut(s)	7, 70, 115
HinfI	GANTC	5 cut(s)	95, 134, 161, 306, 311
HpaII	CCGG	4 cut(s)	83, 109, 229, 233
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	127, 139, 166, 305
Hpy188III	TCNNGA	3 cut(s)	61, 148, 187
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	7 cut(s)	82, 149, 209, 212, 215, 218, 281
HpyAV	CCTTC	2 cut(s)	49, 359
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	323, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 550
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	80, 210
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	3 cut(s)	7, 70, 115
KroI	GCCGGC	2 cut(s)	82, 228
KroNI	GCCGGC	2 cut(s)	84, 230
Kzo9I	GATC	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	235, 360
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	4 cut(s)	275, 287, 332, 344
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	20, 193, 356, 477
MluI	ACGCGT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	104, 128, 320
MmeI	TCCRAC	1 cut(s)	443
Mox20I	TGGCCA	1 cut(s)	489
MreI	CGCCGGCG	1 cut(s)	82
MroNI	GCCGGC	2 cut(s)	82, 228
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	489
MspI	CCGG	4 cut(s)	83, 109, 229, 233
MunI	CAATTG	1 cut(s)	356
MvnI	CGCG	3 cut(s)	70, 241, 544
MwoI	GCNNNNNNNGC	2 cut(s)	238, 550
NaeI	GCCGGC	2 cut(s)	84, 230
NdeII	GATC	1 cut(s)	183
NgoMIV	GCCGGC	2 cut(s)	82, 228
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	2 cut(s)	499, 560
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	6 cut(s)	74, 165, 174, 210, 213, 273
PdiI	GCCGGC	2 cut(s)	84, 230
PfeI	GAWTC	2 cut(s)	161, 306
PflFI	GACNNNGTC	2 cut(s)	209, 212
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	11, 88
PleI	GAGTC	3 cut(s)	103, 128, 319
PpsI	GAGTC	3 cut(s)	103, 128, 319
PspN4I	GGNNCC	2 cut(s)	499, 560
PspPI	GGNCC	2 cut(s)	223, 559
PsyI	GACNNNGTC	2 cut(s)	209, 212
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	10, 87
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	223, 559
SchI	GAGTC	3 cut(s)	104, 128, 320
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	4 cut(s)	213, 225, 254, 555
SgrAI	CRCCGGYG	1 cut(s)	82
SinI	GGWCC	2 cut(s)	223, 559
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	4 cut(s)	20, 193, 356, 477
SsiI	CCGC	2 cut(s)	86, 226
SspMI	CTAG	1 cut(s)	119
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	5 cut(s)	93, 147, 216, 261, 309
TasI	AATT	4 cut(s)	20, 193, 356, 477
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	161, 306
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	2 cut(s)	209, 212
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	223, 559
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XspI	CTAG	1 cut(s)	119
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.