Rh6CG178900

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018932
Physical Location & Seq
Forward (+)
28067511 .. 28068228
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG178900.1

Sequence Viewer

Length: 453 bp
ATGAAAGGAAAAAAAAAAAAAAAAGTAAAATGGCATAAACTCACGCTCTCGAACCAGCCAGAACAATCACGCCACCGAGACGCAGAAATCAATCTCACGCTCTCAGTCATAAATCTTGAATTCCAGCCCCAATTTGATGACATGAAGCGTAGCCTCGACCATTTCGAAATCTCCGACGACGAGTGGGAGGAGCACTCCTCCTCCTTCAAGCCCTCCCACGTCCTCAAGAAGTCGCGCACCTCGACGCCGGCGGCAATCGAGTCATTCGCCTACCAGAAGCGTCGAGTCTCTGACAACGACTCTGATTACGTCGAGATTAAGGACGATTCGGACGACGATTGCGTGGAGATCAAGAACGATTTGGAGGACGACGACGTCGTTGAGGAGGTCCGCCGGCCGGTGACGCGTGCACAGAGGTTTGTGGTCGAAGACGAGGATAGCGACGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

150

Amino Acids

17.57

Weight (kDa)

4.87

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018932)

Species Orthologous Gene IDs
pyrus_communis pycom13g01030
rosa_multiflora Rmu_sc0003226.1_g000058
rosa_samantha Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AatII GACGTC 1 cut(s) 378
AccII CGCG 2 cut(s) 235, 406
AciI CCGC 2 cut(s) 251, 391
AcoI YGGCCR 1 cut(s) 395
AcsI RAATTY 1 cut(s) 119
AcyI GRCGYC 2 cut(s) 245, 375
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 2 cut(s) 119, 208
AjiI CACGTC 1 cut(s) 220
Alw21I GWGCWC 2 cut(s) 195, 412
Alw26I GTCTC 2 cut(s) 72, 292
Alw44I GTGCAC 1 cut(s) 408
AoxI GGCC 1 cut(s) 395
ApaLI GTGCAC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 195, 412
BcoDI GTCTC 2 cut(s) 72, 292
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 388
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 4 cut(s) 179, 211, 182, 214
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 245, 375
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse118I RCCGGY 3 cut(s) 247, 393, 397
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 4 cut(s) 187, 190, 203, 398
BseSI GKGCMC 1 cut(s) 412
BseX3I CGGCCG 1 cut(s) 395
Bsh1236I CGCG 2 cut(s) 235, 406
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 195, 412
BsiSI CCGG 3 cut(s) 248, 394, 398
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 2 cut(s) 72, 292
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 195, 412
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 2 cut(s) 251, 391
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 2 cut(s) 235, 406
BspT104I TTCGAA 1 cut(s) 165
BsrFI RCCGGY 3 cut(s) 247, 393, 397
BssAI RCCGGY 3 cut(s) 247, 393, 397
BssMI GATC 1 cut(s) 348
BssNI GRCGYC 2 cut(s) 245, 375
BstACI GRCGYC 2 cut(s) 245, 375
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 249, 395, 408
BstDEI CTNAG 1 cut(s) 103
BstFNI CGCG 2 cut(s) 235, 406
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 2 cut(s) 72, 292
BstMBI GATC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 2 cut(s) 235, 406
BstV2I GAAGAC 1 cut(s) 435
BstZI CGGCCG 1 cut(s) 395
BsuRI GGCC 1 cut(s) 397
BtrI CACGTC 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 249, 395, 408
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 3 cut(s) 247, 393, 397
Cfr13I GGNCC 1 cut(s) 388
CseI GACGC 4 cut(s) 89, 253, 269, 412
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 58, 127, 153, 211, 397
CviKI_1 RGCY 5 cut(s) 58, 127, 153, 211, 397
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 395
EagI CGGCCG 1 cut(s) 395
EciI GGCGGA 1 cut(s) 380
EclXI CGGCCG 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 388
Eco52I CGGCCG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 1 cut(s) 145
FaiI YATR 3 cut(s) 36, 110, 143
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 397
HapII CCGG 3 cut(s) 248, 394, 398
HgaI GACGC 4 cut(s) 89, 253, 269, 412
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 2 cut(s) 245, 375
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 4 cut(s) 260, 285, 299, 326
HpaII CCGG 3 cut(s) 248, 394, 398
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 4 cut(s) 175, 292, 304, 331
Hpy188III TCNNGA 5 cut(s) 49, 116, 226, 313, 352
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 219, 309, 375
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 3 cut(s) 219, 309, 375
Hsp92I GRCGYC 2 cut(s) 245, 375
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 235
KroI GCCGGC 2 cut(s) 247, 393
KroNI GCCGGC 2 cut(s) 249, 395
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 7 cut(s) 68, 72, 137, 261, 287, 407, 411
MaeII ACGT 3 cut(s) 219, 309, 375
MaeIII GTNAC 1 cut(s) 400
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 195, 412
MluCI AATT 2 cut(s) 119, 131
MluI ACGCGT 1 cut(s) 404
MlyI GAGTC 3 cut(s) 269, 293, 294
MmeI TCCRAC 1 cut(s) 198
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 2 cut(s) 247, 393
MseI TTAA 1 cut(s) 318
MspI CCGG 3 cut(s) 248, 394, 398
MvnI CGCG 2 cut(s) 235, 406
MwoI GCNNNNNNNGC 1 cut(s) 403
NaeI GCCGGC 2 cut(s) 249, 395
NdeII GATC 1 cut(s) 348
NgoMIV GCCGGC 2 cut(s) 247, 393
NlaIII CATG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 400
NspV TTCGAA 1 cut(s) 165
PcsI WCGNNNNNNNCGW 7 cut(s) 162, 171, 239, 330, 339, 375, 438
PdiI GCCGGC 2 cut(s) 249, 395
PfeI GAWTC 1 cut(s) 326
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 3 cut(s) 268, 293, 293
PpsI GAGTC 3 cut(s) 268, 293, 293
PspPI GGNCC 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 3 cut(s) 269, 293, 294
SduI GDGCHC 2 cut(s) 195, 412
SetI ASST 6 cut(s) 222, 242, 312, 378, 390, 419
SfuI TTCGAA 1 cut(s) 165
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 119, 131
SsiI CCGC 2 cut(s) 251, 391
TaiI ACGT 3 cut(s) 222, 312, 378
TaqI TCGA 8 cut(s) 50, 156, 165, 242, 258, 283, 312, 426
TasI AATT 2 cut(s) 119, 131
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 17, 158
Tth111I GACNNNGTC 1 cut(s) 374
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 119
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.