SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g01030 |
| rosa_multiflora | Rmu_sc0003226.1_g000058 |
| rosa_samantha | Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 287 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AgsI | TTSAA | 2 cut(s) | 11, 244 |
| AluBI | AGCT | 1 cut(s) | 78 |
| AluI | AGCT | 1 cut(s) | 78 |
| Alw21I | GWGCWC | 2 cut(s) | 80, 231 |
| Alw26I | GTCTC | 1 cut(s) | 328 |
| ApeKI | GCWGC | 1 cut(s) | 186 |
| AseI | ATTAAT | 1 cut(s) | 20 |
| AspLEI | GCGC | 2 cut(s) | 186, 273 |
| AsuII | TTCGAA | 1 cut(s) | 201 |
| BanII | GRGCYC | 1 cut(s) | 80 |
| Bbv12I | GWGCWC | 2 cut(s) | 80, 231 |
| BbvI | GCAGC | 1 cut(s) | 198 |
| BcoDI | GTCTC | 1 cut(s) | 328 |
| BisI | GCNGC | 2 cut(s) | 187, 288 |
| BlsI | GCNGC | 2 cut(s) | 188, 289 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 215, 247, 218, 250 |
| Bpu14I | TTCGAA | 1 cut(s) | 201 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BsaWI | WCCGGW | 1 cut(s) | 309 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| Bse118I | RCCGGY | 1 cut(s) | 283 |
| Bse3DI | GCAATG | 1 cut(s) | 136 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseMI | GCAATG | 1 cut(s) | 136 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseRI | GAGGAG | 3 cut(s) | 223, 226, 239 |
| BseXI | GCAGC | 1 cut(s) | 198 |
| Bsh1236I | CGCG | 1 cut(s) | 271 |
| BsiHKAI | GWGCWC | 2 cut(s) | 80, 231 |
| BsiSI | CCGG | 2 cut(s) | 284, 310 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 1 cut(s) | 328 |
| Bsp119I | TTCGAA | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 2 cut(s) | 80, 231 |
| BspACI | CCGC | 1 cut(s) | 287 |
| BspCNI | CTCAG | 1 cut(s) | 65 |
| BspFNI | CGCG | 1 cut(s) | 271 |
| BspT104I | TTCGAA | 1 cut(s) | 201 |
| BsrDI | GCAATG | 1 cut(s) | 136 |
| BsrFI | RCCGGY | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 283 |
| BstBI | TTCGAA | 1 cut(s) | 201 |
| BstDEI | CTNAG | 1 cut(s) | 52 |
| BstFNI | CGCG | 1 cut(s) | 271 |
| BstHHI | GCGC | 2 cut(s) | 186, 273 |
| BstMAI | GTCTC | 1 cut(s) | 328 |
| BstUI | CGCG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 1 cut(s) | 198 |
| CfoI | GCGC | 2 cut(s) | 186, 273 |
| Cfr10I | RCCGGY | 1 cut(s) | 283 |
| CseI | GACGC | 1 cut(s) | 244 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviJI | RGCY | 4 cut(s) | 78, 163, 189, 247 |
| CviKI_1 | RGCY | 4 cut(s) | 78, 163, 189, 247 |
| DdeI | CTNAG | 1 cut(s) | 52 |
| Ecl136II | GAGCTC | 1 cut(s) | 78 |
| Eco24I | GRGCYC | 1 cut(s) | 80 |
| Eco53kI | GAGCTC | 1 cut(s) | 78 |
| EcoICRI | GAGCTC | 1 cut(s) | 78 |
| EcoT38I | GRGCYC | 1 cut(s) | 80 |
| FaeI | CATG | 1 cut(s) | 181 |
| FaiI | YATR | 1 cut(s) | 179 |
| FatI | CATG | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 2 cut(s) | 187, 288 |
| FriOI | GRGCYC | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 2 cut(s) | 187, 288 |
| GlaI | GCGC | 2 cut(s) | 185, 272 |
| GluI | GCNGC | 2 cut(s) | 187, 288 |
| HapII | CCGG | 2 cut(s) | 284, 310 |
| HgaI | GACGC | 1 cut(s) | 244 |
| HhaI | GCGC | 2 cut(s) | 186, 273 |
| Hin1II | CATG | 1 cut(s) | 181 |
| Hin6I | GCGC | 2 cut(s) | 184, 271 |
| HinP1I | GCGC | 2 cut(s) | 184, 271 |
| HinfI | GANTC | 4 cut(s) | 149, 296, 321, 335 |
| HpaII | CCGG | 2 cut(s) | 284, 310 |
| Hpy188I | TCNGA | 5 cut(s) | 148, 154, 211, 328, 340 |
| Hpy188III | TCNNGA | 1 cut(s) | 262 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 3 cut(s) | 97, 106, 250 |
| HpyF3I | CTNAG | 1 cut(s) | 52 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| HspAI | GCGC | 2 cut(s) | 184, 271 |
| LmnI | GCTCC | 2 cut(s) | 75, 226 |
| LpnPI | CCDG | 4 cut(s) | 113, 265, 297, 323 |
| Lsp1109I | GCAGC | 1 cut(s) | 198 |
| MhlI | GDGCHC | 2 cut(s) | 80, 231 |
| MluCI | AATT | 2 cut(s) | 11, 167 |
| MlyI | GAGTC | 3 cut(s) | 305, 329, 330 |
| MmeI | TCCRAC | 1 cut(s) | 234 |
| MnlI | CCTC | 7 cut(s) | 101, 200, 217, 244, 247, 259, 269 |
| MseI | TTAA | 1 cut(s) | 20 |
| MslI | CAYNNNNRTG | 1 cut(s) | 70 |
| MspI | CCGG | 2 cut(s) | 284, 310 |
| MvnI | CGCG | 1 cut(s) | 271 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NspV | TTCGAA | 1 cut(s) | 201 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 198, 207, 275 |
| PfeI | GAWTC | 1 cut(s) | 149 |
| PkrI | GCNGC | 2 cut(s) | 188, 289 |
| PleI | GAGTC | 3 cut(s) | 304, 329, 329 |
| PpsI | GAGTC | 3 cut(s) | 304, 329, 329 |
| PshBI | ATTAAT | 1 cut(s) | 20 |
| Psp124BI | GAGCTC | 1 cut(s) | 80 |
| RseI | CAYNNNNRTG | 1 cut(s) | 70 |
| SacI | GAGCTC | 1 cut(s) | 80 |
| SaqAI | TTAA | 1 cut(s) | 20 |
| SatI | GCNGC | 2 cut(s) | 187, 288 |
| SchI | GAGTC | 3 cut(s) | 305, 329, 330 |
| SduI | GDGCHC | 2 cut(s) | 80, 231 |
| SetI | ASST | 1 cut(s) | 80 |
| SfuI | TTCGAA | 1 cut(s) | 201 |
| SgrAI | CRCCGGYG | 1 cut(s) | 283 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 70 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 2 cut(s) | 11, 167 |
| SsiI | CCGC | 1 cut(s) | 287 |
| SstI | GAGCTC | 1 cut(s) | 80 |
| TaqI | TCGA | 3 cut(s) | 192, 201, 294 |
| TasI | AATT | 2 cut(s) | 11, 167 |
| TauI | GCSGC | 1 cut(s) | 290 |
| TfiI | GAWTC | 1 cut(s) | 149 |
| Tru1I | TTAA | 1 cut(s) | 20 |
| Tru9I | TTAA | 1 cut(s) | 20 |
| TseI | GCWGC | 1 cut(s) | 186 |
| TspDTI | ATGAA | 2 cut(s) | 6, 194 |
| VspI | ATTAAT | 1 cut(s) | 20 |