Rmu_sc0003226.1_g000058

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0018932
Physical Location & Seq
Forward (+)
239785 .. 241222
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000058.1.cds

Sequence Viewer

Length: 825 bp
atgaagcgcagcctcgaccatttcgaaatctccgacgacgagtgggaggagcactcctcctccttcaagccctcccgcgtcctcaagaagtcgcgcaccccgacgccggcggcaattgagtcattcgcctaccggaagcgccgagtctctgacaacgactctgattgcgtcgagattaaggacgattcggacgacgattgcgtggagatcaagaacgatttggaggacgacgacgtcgacgaggaggtccgccggccggtgacgcgtggacggaggtttgtggtcgaagacgaggatagcgacggggattggcctcctattcgcttcggattcgagtctctcattgcaccaccaccaaaccctcttctttcccttcttcaattgttactactacttccaaatcccaatccctttcctctatctcacaatgcactcacaactccaactcatttcggctctacacatgctctacgtcatctctcaacttccacaggaggccaaattccatctggcgcagcctcgaccatttcgaaatctccgacgacgagtgggaggagcattcctcctccttcaagcctcccgcgtcctcaagaagtcgcgcaccccgacgccggtggcaatctagacgattcggacgacgattgcatggagatcaagaacgatttggaggacgacaacgtcgtcgaggaggtccgccggccggtgatgcatggacggaggtttgtgatcgaagacgaggatagcgacggggattggcctcctcttcgcttcggattcgagtctctcattgcaccaccaccaaaccctcttctttcccttctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

274

Amino Acids

30.52

Weight (kDa)

4.55

Isoelectric Point (pI)

67.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018932)

Species Orthologous Gene IDs
pyrus_communis pycom13g01030
rosa_multiflora Rmu_sc0003226.1_g000058
rosa_samantha Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 233, 245, 677, 680
AatII GACGTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 237
AccII CGCG 5 cut(s) 78, 94, 265, 583, 599
AciI CCGC 5 cut(s) 76, 110, 250, 581, 694
AcoI YGGCCR 2 cut(s) 254, 698
AcsI RAATTY 1 cut(s) 501
AcyI GRCGYC 3 cut(s) 104, 234, 609
AfiI CCNNNNNNNGG 4 cut(s) 106, 256, 611, 700
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 67, 380, 573
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 151, 342, 786
AoxI GGCC 5 cut(s) 254, 311, 496, 698, 755
ApeKI GCWGC 2 cut(s) 9, 515
ApoI RAATTY 1 cut(s) 501
AspLEI GCGC 5 cut(s) 9, 96, 141, 515, 601
AspS9I GGNCC 2 cut(s) 247, 691
AsuHPI GGTGA 2 cut(s) 271, 715
AsuII TTCGAA 2 cut(s) 24, 530
AvaII GGWCC 2 cut(s) 247, 691
BbsI GAAGAC 2 cut(s) 294, 738
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 21, 527
BccI CCATC 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 151, 342, 786
BfaI CTAG 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 3 cut(s) 10, 111, 516
BlsI GCNGC 3 cut(s) 11, 112, 517
Bme18I GGWCC 2 cut(s) 247, 691
BmgT120I GGNCC 2 cut(s) 247, 691
BmsI GCATC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 294, 738
BplI GAGNNNNNCTC 6 cut(s) 38, 70, 41, 73, 547, 579
Bpu14I TTCGAA 2 cut(s) 24, 530
BpuEI CTTGAG 2 cut(s) 68, 573
BsaHI GRCGYC 3 cut(s) 104, 234, 609
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 256, 611, 700
Bse118I RCCGGY 6 cut(s) 106, 252, 256, 611, 696, 700
Bse3DI GCAATG 2 cut(s) 342, 786
BseLI CCNNNNNNNGG 4 cut(s) 106, 256, 611, 700
BseMI GCAATG 2 cut(s) 342, 786
BseRI GAGGAG 8 cut(s) 46, 49, 62, 257, 555, 568, 701, 750
BseX3I CGGCCG 2 cut(s) 254, 698
BseXI GCAGC 2 cut(s) 21, 527
Bsh1236I CGCG 5 cut(s) 78, 94, 265, 583, 599
Bsh1285I CGRYCG 2 cut(s) 257, 701
BshFI GGCC 5 cut(s) 256, 313, 498, 700, 757
BsiEI CGRYCG 2 cut(s) 257, 701
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 7 cut(s) 107, 133, 253, 257, 612, 697, 701
BslI CCNNNNNNNGG 4 cut(s) 106, 256, 611, 700
BsmAI GTCTC 3 cut(s) 151, 342, 786
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 5 cut(s) 256, 313, 498, 700, 757
Bsp119I TTCGAA 2 cut(s) 24, 530
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 3 cut(s) 207, 651, 726
BspACI CCGC 5 cut(s) 76, 110, 250, 581, 694
BspANI GGCC 5 cut(s) 256, 313, 498, 700, 757
BspFNI CGCG 5 cut(s) 78, 94, 265, 583, 599
BspT104I TTCGAA 2 cut(s) 24, 530
BsrDI GCAATG 2 cut(s) 342, 786
BsrFI RCCGGY 6 cut(s) 106, 252, 256, 611, 696, 700
BssAI RCCGGY 6 cut(s) 106, 252, 256, 611, 696, 700
BssMI GATC 3 cut(s) 207, 651, 726
BssNI GRCGYC 3 cut(s) 104, 234, 609
Bst6I CTCTTC 3 cut(s) 369, 768, 813
BstACI GRCGYC 3 cut(s) 104, 234, 609
BstBI TTCGAA 2 cut(s) 24, 530
BstC8I GCNNGC 3 cut(s) 108, 254, 698
BstFNI CGCG 5 cut(s) 78, 94, 265, 583, 599
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 5 cut(s) 9, 96, 141, 515, 601
BstKTI GATC 3 cut(s) 210, 654, 729
BstMAI GTCTC 3 cut(s) 151, 342, 786
BstMBI GATC 3 cut(s) 207, 651, 726
BstMCI CGRYCG 2 cut(s) 257, 701
BstMWI GCNNNNNNNGC 2 cut(s) 262, 706
BstNSI RCATGY 1 cut(s) 467
BstUI CGCG 5 cut(s) 78, 94, 265, 583, 599
BstV1I GCAGC 2 cut(s) 21, 527
BstV2I GAAGAC 2 cut(s) 294, 738
BstZI CGGCCG 2 cut(s) 254, 698
BsuRI GGCC 5 cut(s) 256, 313, 498, 700, 757
Cac8I GCNNGC 3 cut(s) 108, 254, 698
CfoI GCGC 5 cut(s) 9, 96, 141, 515, 601
Cfr10I RCCGGY 6 cut(s) 106, 252, 256, 611, 696, 700
Cfr13I GGNCC 2 cut(s) 247, 691
CseI GACGC 6 cut(s) 67, 112, 157, 271, 572, 617
CviAII CATG 3 cut(s) 464, 646, 710
DpnI GATC 3 cut(s) 209, 653, 728
DpnII GATC 3 cut(s) 207, 651, 726
DrdI GACNNNNNNGTC 4 cut(s) 233, 245, 677, 680
DseDI GACNNNNNNGTC 4 cut(s) 233, 245, 677, 680
EaeI YGGCCR 2 cut(s) 254, 698
EagI CGGCCG 2 cut(s) 254, 698
Eam1104I CTCTTC 3 cut(s) 369, 768, 813
EarI CTCTTC 3 cut(s) 369, 768, 813
EciI GGCGGA 2 cut(s) 239, 683
EclXI CGGCCG 2 cut(s) 254, 698
Eco47I GGWCC 2 cut(s) 247, 691
Eco52I CGGCCG 2 cut(s) 254, 698
EcoT22I ATGCAT 1 cut(s) 711
FaeI CATG 3 cut(s) 467, 649, 713
FaiI YATR 3 cut(s) 465, 647, 711
FatI CATG 3 cut(s) 463, 645, 709
FauI CCCGC 2 cut(s) 83, 588
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 10, 111, 516
Fsp4HI GCNGC 3 cut(s) 10, 111, 516
FspBI CTAG 1 cut(s) 623
GlaI GCGC 5 cut(s) 8, 95, 140, 514, 600
GluI GCNGC 3 cut(s) 10, 111, 516
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 5 cut(s) 256, 313, 498, 700, 757
HapII CCGG 7 cut(s) 107, 133, 253, 257, 612, 697, 701
HgaI GACGC 6 cut(s) 67, 112, 157, 271, 572, 617
HhaI GCGC 5 cut(s) 9, 96, 141, 515, 601
Hin1I GRCGYC 3 cut(s) 104, 234, 609
Hin1II CATG 3 cut(s) 467, 649, 713
Hin6I GCGC 5 cut(s) 7, 94, 139, 513, 599
HinP1I GCGC 5 cut(s) 7, 94, 139, 513, 599
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 9 cut(s) 119, 144, 158, 185, 330, 335, 629, 774, 779
HpaII CCGG 7 cut(s) 107, 133, 253, 257, 612, 697, 701
HphI GGTGA 2 cut(s) 271, 715
Hpy166II GTNNAC 2 cut(s) 238, 269
Hpy188I TCNGA 8 cut(s) 34, 151, 163, 190, 329, 540, 634, 773
Hpy188III TCNNGA 6 cut(s) 85, 172, 211, 590, 623, 655
Hpy8I GTNNAC 2 cut(s) 238, 269
HpyAV CCTTC 3 cut(s) 73, 383, 579
HpyCH4IV ACGT 3 cut(s) 234, 472, 678
HpyCH4V TGCA 5 cut(s) 347, 431, 645, 709, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 706
HpySE526I ACGT 3 cut(s) 234, 472, 678
Hsp92I GRCGYC 3 cut(s) 104, 234, 609
Hsp92II CATG 3 cut(s) 467, 649, 713
HspAI GCGC 5 cut(s) 7, 94, 139, 513, 599
KroI GCCGGC 3 cut(s) 106, 252, 696
KroNI GCCGGC 3 cut(s) 108, 254, 698
Kzo9I GATC 3 cut(s) 207, 651, 726
LmnI GCTCC 2 cut(s) 49, 555
LpnPI CCDG 9 cut(s) 120, 146, 266, 270, 477, 495, 625, 710, 714
Lsp1109I GCAGC 2 cut(s) 21, 527
LweI GCATC 1 cut(s) 696
MaeI CTAG 1 cut(s) 623
MaeII ACGT 3 cut(s) 234, 472, 678
MaeIII GTNAC 2 cut(s) 259, 384
MalI GATC 3 cut(s) 209, 653, 728
MboI GATC 3 cut(s) 207, 651, 726
MboII GAAGA 6 cut(s) 299, 356, 368, 743, 755, 800
MfeI CAATTG 2 cut(s) 114, 380
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 114, 380, 501
MluI ACGCGT 1 cut(s) 263
MlyI GAGTC 5 cut(s) 128, 152, 153, 344, 788
MmeI TCCRAC 3 cut(s) 57, 467, 563
Mph1103I ATGCAT 1 cut(s) 711
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 3 cut(s) 106, 252, 696
MseI TTAA 2 cut(s) 177, 823
MspI CCGG 7 cut(s) 107, 133, 253, 257, 612, 697, 701
MunI CAATTG 2 cut(s) 114, 380
Mva1269I GAATGC 1 cut(s) 558
MvnI CGCG 5 cut(s) 78, 94, 265, 583, 599
MwoI GCNNNNNNNGC 2 cut(s) 262, 706
NaeI GCCGGC 3 cut(s) 108, 254, 698
NdeII GATC 3 cut(s) 207, 651, 726
NgoMIV GCCGGC 3 cut(s) 106, 252, 696
NlaIII CATG 3 cut(s) 467, 649, 713
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 2 cut(s) 24, 530
PctI GAATGC 1 cut(s) 558
PdiI GCCGGC 3 cut(s) 108, 254, 698
PfeI GAWTC 4 cut(s) 185, 330, 629, 774
PflFI GACNNNGTC 2 cut(s) 233, 677
PkrI GCNGC 3 cut(s) 11, 112, 517
PleI GAGTC 5 cut(s) 127, 152, 152, 343, 787
PpsI GAGTC 5 cut(s) 127, 152, 152, 343, 787
PspPI GGNCC 2 cut(s) 247, 691
PsyI GACNNNGTC 2 cut(s) 233, 677
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 177, 823
SatI GCNGC 3 cut(s) 10, 111, 516
Sau3AI GATC 3 cut(s) 207, 651, 726
Sau96I GGNCC 2 cut(s) 247, 691
SchI GAGTC 5 cut(s) 128, 152, 153, 344, 788
SduI GDGCHC 1 cut(s) 54
SetI ASST 7 cut(s) 237, 249, 278, 475, 681, 693, 722
SfaNI GCATC 1 cut(s) 696
SfuI TTCGAA 2 cut(s) 24, 530
SgrAI CRCCGGYG 2 cut(s) 106, 611
SgrDI CGTCGACG 1 cut(s) 236
SinI GGWCC 2 cut(s) 247, 691
SmlI CTYRAG 2 cut(s) 83, 588
SmoI CTYRAG 2 cut(s) 83, 588
Sse9I AATT 3 cut(s) 114, 380, 501
SsiI CCGC 5 cut(s) 76, 110, 250, 581, 694
SspMI CTAG 1 cut(s) 623
TaiI ACGT 3 cut(s) 237, 475, 681
TasI AATT 3 cut(s) 114, 380, 501
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 4 cut(s) 185, 330, 629, 774
Tru1I TTAA 2 cut(s) 177, 823
Tru9I TTAA 2 cut(s) 177, 823
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 9, 515
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 286, 730
Tth111I GACNNNGTC 2 cut(s) 233, 677
VpaK11BI GGWCC 2 cut(s) 247, 691
XapI RAATTY 1 cut(s) 501
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 623
ZraI GACGTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.