Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018932

Physical Location & Seq

Genomic Coordinates Forward (+)

29171268 .. 29171699

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG170600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGCTCTCATTCCTTCCTCTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTCAAATCCACTGCTTCTCTGATTCTGATTGTCAGCCCCAATTTGATGACATGAAGCGTAGCCTCGACCATTTCGAAATCTCCGACGACGAGTGGGAGGAGCACTCCTCCTCCTTCAAGCCCTCCCACGTCCTCAAGAAGTCGCGCACCTCGACGCCGGCGGCAATCGAGTCATTCGCCTACCAGAAGCGTCGAGTCTCTGACAACGACTCTGATTACGTCGAGATTAAGGACGATTCGGACGACGATTGCGTGGAGATCAAGAACGATTTGGAGGACGACGACGTCGTTGAGGAGGTCCGCCGGCCGGTGACGCGTGCACAGAGGTTTGTGGTCGAAGACGAGGATAGCGACGGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

143

Amino Acids

16.38

Weight (kDa)

4.27

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018932)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01030
rosa_multiflora	Rmu_sc0003226.1_g000058
rosa_samantha	Rh1DG025100 Rh2CG263000 Rh3BG172500 Rh3CG163800 Rh4CG452700 Rh6CG178900 Rh6DG170600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AatII	GACGTC	1 cut(s)	357
AccII	CGCG	2 cut(s)	214, 385
AciI	CCGC	2 cut(s)	230, 370
AcoI	YGGCCR	1 cut(s)	374
AcyI	GRCGYC	2 cut(s)	224, 354
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	199
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	3 cut(s)	9, 174, 391
Alw26I	GTCTC	1 cut(s)	271
Alw44I	GTGCAC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	374
ApaLI	GTGCAC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	3 cut(s)	9, 174, 391
BcoDI	GTCTC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	4 cut(s)	158, 190, 161, 193
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	224, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	3 cut(s)	226, 372, 376
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseRI	GAGGAG	4 cut(s)	166, 169, 182, 377
BseSI	GKGCMC	1 cut(s)	391
BseX3I	CGGCCG	1 cut(s)	374
Bsh1236I	CGCG	2 cut(s)	214, 385
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	3 cut(s)	9, 174, 391
BsiSI	CCGG	3 cut(s)	227, 373, 377
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	9, 174, 391
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	2 cut(s)	230, 370
BspANI	GGCC	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	214, 385
BspT104I	TTCGAA	1 cut(s)	144
BsrFI	RCCGGY	3 cut(s)	226, 372, 376
BssAI	RCCGGY	3 cut(s)	226, 372, 376
BssMI	GATC	1 cut(s)	327
BssNI	GRCGYC	2 cut(s)	224, 354
BstACI	GRCGYC	2 cut(s)	224, 354
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	228, 374, 387
BstFNI	CGCG	2 cut(s)	214, 385
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	327
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	2 cut(s)	214, 385
BstV2I	GAAGAC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	228, 374, 387
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	3 cut(s)	226, 372, 376
Cfr13I	GGNCC	1 cut(s)	367
CseI	GACGC	3 cut(s)	232, 248, 391
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	7, 106, 132, 190, 376
CviKI_1	RGCY	5 cut(s)	7, 106, 132, 190, 376
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	374
EagI	CGGCCG	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	367
Eco52I	CGGCCG	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	3 cut(s)	227, 373, 377
HgaI	GACGC	3 cut(s)	232, 248, 391
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	2 cut(s)	224, 354
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	5 cut(s)	92, 239, 264, 278, 305
HpaII	CCGG	3 cut(s)	227, 373, 377
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	6 cut(s)	91, 97, 154, 271, 283, 310
Hpy188III	TCNNGA	3 cut(s)	205, 292, 331
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	4 cut(s)	26, 35, 39, 193
HpyCH4IV	ACGT	3 cut(s)	198, 288, 354
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpySE526I	ACGT	3 cut(s)	198, 288, 354
Hsp92I	GRCGYC	2 cut(s)	224, 354
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	214
KroI	GCCGGC	2 cut(s)	226, 372
KroNI	GCCGGC	2 cut(s)	228, 374
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	4, 169
LpnPI	CCDG	4 cut(s)	240, 266, 386, 390
MaeII	ACGT	3 cut(s)	198, 288, 354
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	1 cut(s)	419
MhlI	GDGCHC	3 cut(s)	9, 174, 391
MluCI	AATT	1 cut(s)	110
MluI	ACGCGT	1 cut(s)	383
MlyI	GAGTC	3 cut(s)	248, 272, 273
MmeI	TCCRAC	1 cut(s)	177
MreI	CGCCGGCG	1 cut(s)	226
MroNI	GCCGGC	2 cut(s)	226, 372
MseI	TTAA	1 cut(s)	297
MspI	CCGG	3 cut(s)	227, 373, 377
MvnI	CGCG	2 cut(s)	214, 385
MwoI	GCNNNNNNNGC	1 cut(s)	382
NaeI	GCCGGC	2 cut(s)	228, 374
NdeII	GATC	1 cut(s)	327
NgoMIV	GCCGGC	2 cut(s)	226, 372
NlaIII	CATG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	7 cut(s)	141, 150, 218, 309, 318, 354, 417
PdiI	GCCGGC	2 cut(s)	228, 374
PfeI	GAWTC	2 cut(s)	92, 305
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	3 cut(s)	247, 272, 272
PpsI	GAGTC	3 cut(s)	247, 272, 272
Psp124BI	GAGCTC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	3 cut(s)	248, 272, 273
SduI	GDGCHC	3 cut(s)	9, 174, 391
SetI	ASST	7 cut(s)	9, 201, 221, 291, 357, 369, 398
SfuI	TTCGAA	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	230, 370
SstI	GAGCTC	1 cut(s)	9
TaiI	ACGT	3 cut(s)	201, 291, 357
TaqI	TCGA	7 cut(s)	135, 144, 221, 237, 262, 291, 405
TasI	AATT	1 cut(s)	110
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	92, 305
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	86
Tth111I	GACNNNGTC	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	367
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.