Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010448

Physical Location & Seq

Genomic Coordinates Forward (+)

4102946 .. 4104861

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGATGGCTAACAATGGTGCTATATATGCAACAGAAACCCCTAATACCTTAAGCTGTTTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCAATGGGAATGGTTTATGCCGATATGGGCTCTCTTTCTCTGAGCTCCAAGTATGGAGTATACTCATCAGTTTCTTCCCAGGACAGCAGCCACATCTCTAAGATTTCTGAATCAGAAAATGGAAGGGCATTCTGGGGTTTTCCTTCTACCAGAAGTTATGAGGATCACCACAACAGCAGTGACATGAAGGGCTCAGATTATACCAGCAGTGATCACGATAAGAATCCTAATGAGAGTGGGGTGAAAGTTAGTGAGAAGGAAACAGAAAGTGGGCAATCAAAACTGTGTGCCAGAGGGCATTGGAGGCCTGCTGAGGATTCCAAGCTCAAGGAACTTGTGGCTCTCTATGGCCCTCAGAACTGGAACCTTATTGCAGAGAAGCTGGAAGGAAGATCAGGTAAGAGCTGCAGATTAAGATGGTTTAACCAGCTGGACCCAAGAATCAACAGAAGAGCTTTCACTGAGGAGGAAGAAGAAAGACTAATGCAAGCTCATAGAATATATGGCAACAAGTGGGCCATGATAGCCAGGCTCTTTCCTGGAAGAACTGATAATGCTGTGAAGAACCATTGGCATGTTATCATGGCCAGGAAGTACAGAGAGCAATCCAGTGCTTATCGGAGGAGGAAGCTAAACCAAACTGTTTACAGAAGCATGGAGGAAAATCCAAGCTTCAATGCAGCCTCGAGGAGTACTGAACCTCCACCACCTTATGGTGGTCTTAGTCTCCCCAATGGCGGCCTCGGCGGCAGTGGTTCTATATCTTCTTTTTCATATGGAACAAGCTATGATGGTGTTGTTGGTTATGGGGCTGATTATTATGGCTCAAATGGTTCACAAAACTTGATTAGTGTGGAAGAAGAAGCAATCACAAGGAAAAAGTTGCTTTCTCATAATAATAGTGGATTTTGTTCACAACAAGAAACTCCTTTTGAATTCTTCCGTGGTCCGAAGAGCAATGAGGTGATGGGGATGATGAGCCAGAACCGATGTTGGGATGGTTCAGGTGAGATGGAGGGTCATTCGTATGGGGGTATGTATACCCACCATCCACCTCCAAACATGAATGTCACGACAATGCAACAGTCAAACTTCCACAGCCTTGTTCATCAAAAGTACTCAGATTCTTCATGTCAAGTTTCAGGCGGCAAGCCCTCAACATCAGCATCAGCTGCTGACAGAGTTGTTGGCGGCGGCGGCGGCGGCAGCAGCCACCGTGAGACGAGCATTCCGCCACCGCCCTTCATTGATTTTCTTGGGGTAGGAGCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

455

Amino Acids

49.81

Weight (kDa)

7.25

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	128 - 174	7.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	131 - 191	3.4e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	180 - 222	5.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	183 - 231	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26780 AT1G26780
fragaria_vesca	FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190
malus_domestica	MD13G1070400.v1.1 MD16G1071300.v1.1
prunus_persica	Prupe.1G276300_v2.0.a1
pyrus_communis	pycom13g06320 pycom16g06170
rosa_chinensis	RchiOBHm_Chr4g0439571
rosa_laevigata	RLG00000006257
rosa_multiflora	Rmu_sc0002549.1_g000025
rosa_roxburghii	Rroxscaffold_5G00380500
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500
rosa_wichuraiana	Rw4G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	2 cut(s)	150, 1130
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	1025
AfaI	GTAC	3 cut(s)	686, 784, 1208
AfiI	CCNNNNNNNGG	4 cut(s)	803, 806, 827, 1084
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	93, 766, 1025
AjnI	CCWGG	4 cut(s)	168, 617, 628, 677
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	2 cut(s)	821, 1304
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	1265
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	5 cut(s)	395, 439, 606, 675, 829
ApeKI	GCWGC	6 cut(s)	177, 495, 770, 1262, 1296, 1299
ApoI	RAATTY	1 cut(s)	1025
AspS9I	GGNCC	4 cut(s)	440, 523, 606, 1037
AsuHPI	GGTGA	4 cut(s)	248, 343, 1066, 1109
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	2 cut(s)	523, 1037
BalI	TGGCCA	1 cut(s)	677
BanII	GRGCYC	3 cut(s)	122, 137, 284
Bbv12I	GWGCWC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	6 cut(s)	189, 482, 782, 1249, 1308, 1311
BccI	CCATC	6 cut(s)	501, 875, 1051, 1082, 1096, 1146
BciT130I	CCWGG	4 cut(s)	170, 619, 630, 679
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	821, 1304
BfmI	CTRYAG	1 cut(s)	496
BfrI	CTTAAG	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	837
BmcAI	AGTACT	2 cut(s)	784, 1208
Bme1390I	CCNGG	4 cut(s)	170, 619, 630, 679
Bme18I	GGWCC	2 cut(s)	523, 1037
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	4 cut(s)	440, 523, 606, 1037
BmiI	GGNNCC	3 cut(s)	455, 525, 1357
BmrFI	CCNGG	4 cut(s)	170, 619, 630, 679
BmsI	GCATC	1 cut(s)	1265
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	168, 832, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	4 cut(s)	803, 806, 827, 1084
Bse1I	ACTGG	2 cut(s)	455, 699
Bse3DI	GCAATG	1 cut(s)	1054
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	4 cut(s)	170, 619, 630, 679
BseDI	CCNNGG	3 cut(s)	168, 832, 1033
BseGI	GGATG	3 cut(s)	1068, 1093, 1138
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	4 cut(s)	803, 806, 827, 1084
BseMI	GCAATG	1 cut(s)	1054
BseMII	CTCAG	6 cut(s)	122, 297, 393, 458, 543, 1224
BseNI	ACTGG	2 cut(s)	455, 699
BseRI	GAGGAG	6 cut(s)	52, 55, 58, 569, 727, 793
BseXI	GCAGC	6 cut(s)	189, 482, 782, 1249, 1308, 1311
BshFI	GGCC	5 cut(s)	397, 441, 608, 677, 831
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	775
BslI	CCNNNNNNNGG	4 cut(s)	803, 806, 827, 1084
BsmAI	GTCTC	2 cut(s)	821, 1304
BsmBI	CGTCTC	1 cut(s)	1304
BsmI	GAATGC	2 cut(s)	218, 1317
BsnI	GGCC	5 cut(s)	397, 441, 608, 677, 831
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	3 cut(s)	122, 137, 284
Bsp143I	GATC	3 cut(s)	253, 301, 482
BspANI	GGCC	5 cut(s)	397, 441, 608, 677, 831
BspCNI	CTCAG	6 cut(s)	123, 296, 394, 457, 544, 1223
BspLI	GGNNCC	3 cut(s)	455, 525, 1357
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	2 cut(s)	535, 1037
BspTI	CTTAAG	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	1054
BsrI	ACTGG	2 cut(s)	455, 699
BssECI	CCNNGG	3 cut(s)	168, 832, 1033
BssMI	GATC	3 cut(s)	253, 301, 482
BssNAI	GTATAC	2 cut(s)	151, 1131
Bst1107I	GTATAC	2 cut(s)	151, 1131
Bst2UI	CCWGG	4 cut(s)	170, 619, 630, 679
Bst4CI	ACNGT	4 cut(s)	375, 733, 1176, 1307
Bst6I	CTCTTC	3 cut(s)	76, 535, 1037
BstAFI	CTTAAG	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstC8I	GCNNGC	3 cut(s)	399, 579, 1241
BstDEI	CTNAG	8 cut(s)	131, 189, 283, 402, 444, 552, 812, 1210
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	3 cut(s)	1068, 1093, 1138
BstKTI	GATC	3 cut(s)	256, 304, 485
BstMAI	GTCTC	2 cut(s)	821, 1304
BstMBI	GATC	3 cut(s)	253, 301, 482
BstNI	CCWGG	4 cut(s)	170, 619, 630, 679
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	4 cut(s)	168, 617, 628, 677
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	6 cut(s)	189, 482, 782, 1249, 1308, 1311
BstZ17I	GTATAC	2 cut(s)	151, 1131
BsuRI	GGCC	5 cut(s)	397, 441, 608, 677, 831
BtgI	CCRYGG	1 cut(s)	1033
BtsCI	GGATG	3 cut(s)	1068, 1093, 1138
BtsI	GCAGTG	3 cut(s)	274, 304, 847
BtsIMutI	CAGTG	5 cut(s)	274, 304, 549, 706, 847
Cac8I	GCNNGC	3 cut(s)	399, 579, 1241
CaiI	CAGNNNCTG	1 cut(s)	1265
Cfr13I	GGNCC	4 cut(s)	440, 523, 606, 1037
Csp6I	GTAC	3 cut(s)	685, 783, 1207
CviAII	CATG	8 cut(s)	274, 610, 665, 673, 745, 1153, 1221, 1362
CviQI	GTAC	3 cut(s)	685, 783, 1207
DdeI	CTNAG	8 cut(s)	131, 189, 283, 402, 444, 552, 812, 1210
DpnI	GATC	3 cut(s)	255, 303, 484
DpnII	GATC	3 cut(s)	253, 301, 482
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	3 cut(s)	76, 535, 1037
EarI	CTCTTC	3 cut(s)	76, 535, 1037
EciI	GGCGGA	1 cut(s)	1311
Ecl136II	GAGCTC	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	3 cut(s)	122, 137, 284
Eco47I	GGWCC	2 cut(s)	523, 1037
Eco53kI	GAGCTC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	1025
EcoRII	CCWGG	4 cut(s)	168, 617, 628, 677
EcoT38I	GRGCYC	3 cut(s)	122, 137, 284
Esp3I	CGTCTC	1 cut(s)	1304
FaeI	CATG	8 cut(s)	277, 613, 668, 676, 748, 1156, 1224, 1365
FatI	CATG	8 cut(s)	273, 609, 664, 672, 744, 1152, 1220, 1361
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	2 cut(s)	150, 1130
FokI	GGATG	3 cut(s)	1075, 1100, 1125
FriOI	GRGCYC	3 cut(s)	122, 137, 284
HaeIII	GGCC	5 cut(s)	397, 441, 608, 677, 831
Hin1II	CATG	8 cut(s)	277, 613, 668, 676, 748, 1156, 1224, 1365
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	5 cut(s)	200, 313, 407, 531, 1214
HphI	GGTGA	4 cut(s)	248, 343, 1066, 1109
Hpy166II	GTNNAC	5 cut(s)	151, 736, 926, 1004, 1131
Hpy188I	TCNGA	8 cut(s)	132, 199, 205, 286, 447, 711, 1041, 1213
Hpy188III	TCNNGA	2 cut(s)	305, 1162
Hpy8I	GTNNAC	5 cut(s)	151, 736, 926, 1004, 1131
HpyAV	CCTTC	6 cut(s)	207, 243, 271, 340, 470, 1342
HpyCH4III	ACNGT	4 cut(s)	375, 733, 1176, 1307
HpyCH4V	TGCA	6 cut(s)	29, 464, 498, 577, 770, 1171
HpyF3I	CTNAG	8 cut(s)	131, 189, 283, 402, 444, 552, 812, 1210
Hsp92II	CATG	8 cut(s)	277, 613, 668, 676, 748, 1156, 1224, 1365
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	253, 301, 482
LguI	GCTCTTC	2 cut(s)	535, 1037
LmnI	GCTCC	2 cut(s)	140, 1355
Lsp1109I	GCAGC	6 cut(s)	189, 482, 782, 1249, 1308, 1311
LweI	GCATC	1 cut(s)	1265
MaeIII	GTNAC	2 cut(s)	269, 1159
MalI	GATC	3 cut(s)	255, 303, 484
MboI	GATC	3 cut(s)	253, 301, 482
MhlI	GDGCHC	3 cut(s)	122, 137, 284
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	1 cut(s)	1025
MluNI	TGGCCA	1 cut(s)	677
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	3 cut(s)	50, 503, 513
MslI	CAYNNNNRTG	3 cut(s)	663, 1116, 1166
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	2 cut(s)	520, 1262
MspCI	CTTAAG	1 cut(s)	49
MspR9I	CCNGG	4 cut(s)	170, 619, 630, 679
Mva1269I	GAATGC	2 cut(s)	218, 1317
MvaI	CCWGG	4 cut(s)	170, 619, 630, 679
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	3 cut(s)	253, 301, 482
NlaIII	CATG	8 cut(s)	277, 613, 668, 676, 748, 1156, 1224, 1365
NlaIV	GGNNCC	3 cut(s)	455, 525, 1357
NmeAIII	GCCGAG	1 cut(s)	813
NmuCI	GTSAC	2 cut(s)	269, 1159
NspI	RCATGY	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	397
PciSI	GCTCTTC	2 cut(s)	535, 1037
PctI	GAATGC	2 cut(s)	218, 1317
PfeI	GAWTC	5 cut(s)	200, 313, 407, 531, 1214
PflMI	CCANNNNNTGG	1 cut(s)	803
PfoI	TCCNGGA	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	4 cut(s)	168, 617, 628, 677
PspGI	CCWGG	4 cut(s)	168, 617, 628, 677
PspN4I	GGNNCC	3 cut(s)	455, 525, 1357
PspPI	GGNCC	4 cut(s)	440, 523, 606, 1037
PspXI	VCTCGAGB	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	1265
PvuII	CAGCTG	2 cut(s)	520, 1262
RsaI	GTAC	3 cut(s)	686, 784, 1208
RsaNI	GTAC	3 cut(s)	685, 783, 1207
RseI	CAYNNNNRTG	3 cut(s)	663, 1116, 1166
SacI	GAGCTC	1 cut(s)	137
SapI	GCTCTTC	2 cut(s)	535, 1037
SaqAI	TTAA	3 cut(s)	50, 503, 513
Sau3AI	GATC	3 cut(s)	253, 301, 482
Sau96I	GGNCC	4 cut(s)	440, 523, 606, 1037
ScaI	AGTACT	2 cut(s)	784, 1208
ScrFI	CCNGG	4 cut(s)	170, 619, 630, 679
SduI	GDGCHC	3 cut(s)	122, 137, 284
SfaNI	GCATC	1 cut(s)	1265
SfcI	CTRYAG	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	775
SinI	GGWCC	2 cut(s)	523, 1037
SlaI	CTCGAG	1 cut(s)	775
SmiMI	CAYNNNNRTG	3 cut(s)	663, 1116, 1166
SmlI	CTYRAG	3 cut(s)	49, 416, 775
SmoI	CTYRAG	3 cut(s)	49, 416, 775
Sse9I	AATT	1 cut(s)	1025
SseBI	AGGCCT	1 cut(s)	397
SstI	GAGCTC	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	4 cut(s)	168, 617, 628, 677
TaaI	ACNGT	4 cut(s)	375, 733, 1176, 1307
TaqI	TCGA	1 cut(s)	776
TasI	AATT	1 cut(s)	1025
TatI	WGTACW	3 cut(s)	684, 782, 1206
TauI	GCSGC	8 cut(s)	831, 840, 1239, 1284, 1287, 1290, 1293, 1296
TfiI	GAWTC	5 cut(s)	200, 313, 407, 531, 1214
Tru1I	TTAA	3 cut(s)	50, 503, 513
Tru9I	TTAA	3 cut(s)	50, 503, 513
TscAI	CASTG	5 cut(s)	274, 304, 556, 706, 847
TseFI	GTSAC	2 cut(s)	269, 1159
TseI	GCWGC	6 cut(s)	177, 495, 770, 1262, 1296, 1299
Tsp45I	GTSAC	2 cut(s)	269, 1159
TspDTI	ATGAA	6 cut(s)	290, 852, 1169, 1187, 1209, 1324
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	5 cut(s)	274, 304, 556, 706, 847
Van91I	CCANNNNNTGG	1 cut(s)	803
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	523, 1037
XapI	RAATTY	1 cut(s)	1025
XceI	RCATGY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	775
XmiI	GTMKAC	2 cut(s)	150, 1130
ZrmI	AGTACT	2 cut(s)	784, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.