Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

4334957 .. 4336903

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTGGAACCGCAAATCGGCGCTGATCGGATTGATCAGTTGCTTTTACTTTCACTCCGTATTTCTGACTAGTTTCGTCGCCGCTTCTTCTCCGGAGCTGCTGCTCGGATCTGCCCGCGTCGTTTTTCAGACCAACTATGGCGACATCGAATTCGGGTTCTACCCGACCGTCGCGCCGAAGACGGTGGAGCACATTTTCAAGCTGGTCCGTCTCGGCGGCTACAACACCAACCACATCTTTAGGGTTGAGAAAGGGTTCGTCGCCCAGGTGGCCGACGTGGCCAGCGGAAGATCGGCTCCGATGAACAAGGAGCAGCGGAGAGAGGCGGAGAAGACGGTGGTCGGAGAGTTCAGTGACGTTAAGCATGTCAGGGGCATTCTTTCCATGGGAAGATATGAAGATCCGAACAGCGCCGGATCCTCCTTCTCAATGCTGCTTGGAGATTCCCCTCATCTTGATGGGAAGTATGCAATATTTGGGAAAGTTACTAAAGGTGATGAGACCTTGAGAGCGCTTGAGGAACTCCCTACACATCGGGAAGGGATTTTCGTAATGCCCACCGAGCGCATTACAATTCTGTCAACATACTACTATGACACCGAGATGGAGCATTGTGAACATGAGAGGTCTGTTATGAAGCAGAGGCTTGCTGCATCTGCTGTTGAAATCGAGAGACAGAGAATGAAATGTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

233

Amino Acids

26.2

Weight (kDa)

7.1

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	40 - 195	8e-34	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 173
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	7 cut(s)	10, 81, 115, 216, 285, 316, 326
AclWI	GGATC	4 cut(s)	115, 395, 411, 424
AcoI	YGGCCR	2 cut(s)	270, 279
AcsI	RAATTY	1 cut(s)	149
AfeI	AGCGCT	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	199, 665
AhlI	ACTAGT	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	97, 202
AluI	AGCT	2 cut(s)	97, 202
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	215, 494, 667
AlwI	GGATC	4 cut(s)	115, 395, 411, 424
Aor13HI	TCCGGA	1 cut(s)	91
Aor51HI	AGCGCT	1 cut(s)	513
AoxI	GGCC	2 cut(s)	270, 279
ApeKI	GCWGC	5 cut(s)	97, 100, 313, 433, 650
ApoI	RAATTY	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	2 cut(s)	254, 689
AspLEI	GCGC	5 cut(s)	22, 175, 413, 514, 567
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	185, 338
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	84, 87, 325, 420, 637
BccI	CCATC	2 cut(s)	452, 598
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	215, 494, 667
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	3 cut(s)	23, 414, 515
BglI	GCCNNNNNGGC	2 cut(s)	269, 278
BisI	GCNGC	7 cut(s)	81, 98, 101, 217, 314, 434, 651
BlsI	GCNGC	7 cut(s)	82, 99, 102, 218, 315, 435, 652
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	8, 297, 418
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	662
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	185, 338
BpuEI	CTTGAG	2 cut(s)	526, 536
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	264, 384
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	264, 384
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseXI	GCAGC	5 cut(s)	84, 87, 325, 420, 637
Bsh1236I	CGCG	2 cut(s)	117, 173
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	272, 281
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	92, 414
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	3 cut(s)	215, 494, 667
BsmBI	CGTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	272, 281
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	7 cut(s)	10, 81, 115, 216, 285, 316, 326
BspANI	GGCC	2 cut(s)	272, 281
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	117, 173
BspLI	GGNNCC	3 cut(s)	8, 297, 418
BspPI	GGATC	4 cut(s)	115, 395, 411, 424
BspTNI	GGTCTC	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	264, 384
BssMI	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	169, 184, 337
BstC8I	GCNNGC	3 cut(s)	115, 283, 648
BstDSI	CCRYGG	1 cut(s)	384
BstFNI	CGCG	2 cut(s)	117, 173
BstH2I	RGCGCY	3 cut(s)	23, 414, 515
BstHHI	GCGC	5 cut(s)	22, 175, 413, 514, 567
BstKTI	GATC	6 cut(s)	27, 36, 110, 293, 403, 419
BstMAI	GTCTC	3 cut(s)	215, 494, 667
BstMBI	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 278, 562, 656
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	2 cut(s)	117, 173
BstV1I	GCAGC	5 cut(s)	84, 87, 325, 420, 637
BstV2I	GAAGAC	2 cut(s)	185, 338
BstX2I	RGATCY	3 cut(s)	107, 400, 416
BstYI	RGATCY	3 cut(s)	107, 400, 416
BsuRI	GGCC	2 cut(s)	272, 281
BtgI	CCRYGG	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	115, 283, 648
CfoI	GCGC	5 cut(s)	22, 175, 413, 514, 567
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	106
CviAII	CATG	4 cut(s)	365, 385, 620, 696
CviJI	RGCY	7 cut(s)	97, 202, 219, 272, 281, 296, 646
CviKI_1	RGCY	7 cut(s)	97, 202, 219, 272, 281, 296, 646
DpnI	GATC	6 cut(s)	26, 35, 109, 292, 402, 418
DpnII	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
EaeI	YGGCCR	2 cut(s)	270, 279
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	4 cut(s)	368, 388, 623, 699
FatI	CATG	4 cut(s)	364, 384, 619, 695
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	7 cut(s)	81, 98, 101, 217, 314, 434, 651
Fsp4HI	GCNGC	7 cut(s)	81, 98, 101, 217, 314, 434, 651
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	5 cut(s)	21, 174, 412, 513, 566
GluI	GCNGC	7 cut(s)	81, 98, 101, 217, 314, 434, 651
HaeII	RGCGCY	3 cut(s)	23, 414, 515
HaeIII	GGCC	2 cut(s)	272, 281
HapII	CCGG	2 cut(s)	92, 414
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	5 cut(s)	22, 175, 413, 514, 567
Hin1II	CATG	4 cut(s)	368, 388, 623, 699
Hin6I	GCGC	5 cut(s)	20, 173, 411, 512, 565
HinP1I	GCGC	5 cut(s)	20, 173, 411, 512, 565
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	2 cut(s)	92, 414
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	582, 617
Hpy188I	TCNGA	7 cut(s)	29, 66, 107, 129, 300, 344, 405
Hpy188III	TCNNGA	4 cut(s)	92, 455, 536, 670
Hpy8I	GTNNAC	2 cut(s)	582, 617
Hpy99I	CGWCG	5 cut(s)	80, 122, 173, 263, 278
HpyAV	CCTTC	2 cut(s)	433, 533
HpyCH4III	ACNGT	3 cut(s)	169, 184, 337
HpyCH4IV	ACGT	2 cut(s)	276, 357
HpyCH4V	TGCA	2 cut(s)	470, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 278, 562, 656
HpySE526I	ACGT	2 cut(s)	276, 357
Hsp92II	CATG	4 cut(s)	368, 388, 623, 699
HspAI	GCGC	5 cut(s)	20, 173, 411, 512, 565
Kpn2I	TCCGGA	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
LmnI	GCTCC	5 cut(s)	94, 187, 301, 310, 607
LpnPI	CCDG	7 cut(s)	105, 188, 251, 278, 295, 355, 427
Lsp1109I	GCAGC	5 cut(s)	84, 87, 325, 420, 637
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	276, 357
MaeIII	GTNAC	2 cut(s)	353, 484
MalI	GATC	6 cut(s)	26, 35, 109, 292, 402, 418
MboI	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
MboII	GAAGA	6 cut(s)	78, 190, 300, 343, 402, 410
MflI	RGATCY	3 cut(s)	107, 400, 416
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	149, 573
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	316, 430, 459, 511, 618, 636
Mox20I	TGGCCA	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	91
MroXI	GAANNNNTTC	2 cut(s)	254, 689
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	2 cut(s)	456, 602
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	285, 316
MspI	CCGG	2 cut(s)	92, 414
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	117, 173
MwoI	GCNNNNNNNGC	4 cut(s)	269, 278, 562, 656
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
NlaIII	CATG	4 cut(s)	368, 388, 623, 699
NlaIV	GGNNCC	3 cut(s)	8, 297, 418
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	368
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	2 cut(s)	254, 689
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	7 cut(s)	82, 99, 102, 218, 315, 435, 652
PshAI	GACNNNNGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	8, 297, 418
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	107, 400, 416
RseI	CAYNNNNRTG	2 cut(s)	456, 602
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	7 cut(s)	81, 98, 101, 217, 314, 434, 651
Sau3AI	GATC	6 cut(s)	24, 33, 107, 290, 400, 416
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	99, 204, 270, 279, 360, 496, 506, 629
SfaNI	GCATC	1 cut(s)	662
SfiI	GGCCNNNNNGGCC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	456, 602
SmlI	CTYRAG	2 cut(s)	505, 515
SmoI	CTYRAG	2 cut(s)	505, 515
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	2 cut(s)	149, 573
SsiI	CCGC	7 cut(s)	10, 81, 115, 216, 285, 316, 326
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	3 cut(s)	169, 184, 337
TaiI	ACGT	2 cut(s)	279, 360
TaqI	TCGA	2 cut(s)	147, 669
TasI	AATT	2 cut(s)	149, 573
TauI	GCSGC	2 cut(s)	83, 219
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	5 cut(s)	97, 100, 313, 433, 650
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	317, 411, 650, 698
TspGWI	ACGGA	2 cut(s)	46, 197
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	254, 689
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.