Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011089

Physical Location & Seq

Genomic Coordinates Reverse (-)

6308051 .. 6309905

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09410.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGGTGGGTTTGTCTCTAAACGCAGCGGTTCGGCTTCCGTTGTCGAGCTCGAGGACCCACGAAGATGGTCTGGTCAGGCACTCATTGGTTTCCACAAAGACGACGACTCAGAAAGCGGCTGAGCAAAGGCAGGTCCGCCGCGCGCTGGTGGTTGAATCAAAGGGCAAAAGGGGAATGATGGCCCGCCAGTTTCAACCCAAGAAGCCTCCGCCTCCTGCCATGCCCAAGATTGAAGACGACGGCAACCCTCGTTTCGTCGTCTTTATCCGAATGGCCAATGTTTACCTATGGTACCCACTTAGTGTGATATCAGGTGGTACAACGGCTAAAATCATGATTGCCGCAAAAGATAACTTTCTGGGGAAATATATATACAAGGATACACTTGCTAGAAATCTTGCTGCAGTCATTTACAGAGATGAGAAGGAAATACAGAAGACAGCATTTAAGCAGTACCGAGTTTTGCGGTCAGCTACTGAGTTTAGATATGGCTACAAAATTGTCGAAAACGGTAATATGAGAGCAGCACTTTCTACCTCGGATGTAATTGAGCTACCAACAAAAGACAAGCTCAAAACCACATTTGACAAAGTGAAGGATTTTTTTGGGGATGCAAAGGAATCTTTTGGCAAGCTGACAACACTAAACTTATCCGAGTCTGAAGAATCAGAAGGAAAAACCGAAGAACAGGGAAAGGTAAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.56

Weight (kDa)

9.75

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67700 AT1G67700 AT1G67700 AT1G67700 AT1G67700
fragaria_vesca	FvH4_4g24830
malus_domestica	MD13G1108600.v1.1
prunus_persica	Prupe.1G237600_v2.0.a1
pyrus_communis	pycom13g09410
rosa_chinensis	RchiOBHm_Chr4g0431911
rosa_laevigata	RLG00000006876
rosa_multiflora	Rmu_sc0004965.1_g000007
rosa_roxburghii	Rroxscaffold_5G00373340
rosa_rugosa	Rorug04G0253000 Rorug04G0253000
rosa_samantha	Rh4AG310200 Rh4BG317300 Rh4CG332600 Rh4DG312200
rosa_wichuraiana	Rw4G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccII	CGCG	2 cut(s)	144, 146
AciI	CCGC	8 cut(s)	29, 119, 139, 142, 187, 212, 345, 469
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	684
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	296, 322, 458
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	158, 197, 236
AluBI	AGCT	6 cut(s)	51, 476, 556, 574, 637, 708
AluI	AGCT	6 cut(s)	51, 476, 556, 574, 637, 708
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	183, 276
ApeKI	GCWGC	3 cut(s)	26, 404, 527
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	146, 148
AspS9I	GGNCC	3 cut(s)	57, 136, 184
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	57, 136
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	243, 446
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	38, 391, 539
BccI	CCATC	2 cut(s)	62, 175
BceAI	ACGGC	2 cut(s)	259, 342
BciVI	GTATCC	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	6 cut(s)	27, 120, 142, 345, 405, 528
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	6 cut(s)	28, 121, 143, 346, 406, 529
Bme18I	GGWCC	2 cut(s)	57, 136
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	57, 136, 184
BmiI	GGNNCC	2 cut(s)	59, 296
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	2 cut(s)	243, 446
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	550, 619
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	114, 125, 471
BseNI	ACTGG	1 cut(s)	190
BsePI	GCGCGC	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	38, 391, 539
Bsh1236I	CGCG	2 cut(s)	144, 146
BshFI	GGCC	2 cut(s)	185, 278
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	185, 278
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	8 cut(s)	29, 119, 139, 142, 187, 212, 345, 469
BspANI	GGCC	2 cut(s)	185, 278
BspCNI	CTCAG	3 cut(s)	115, 124, 472
BspFNI	CGCG	2 cut(s)	144, 146
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	59, 296
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	540
BssHII	GCGCGC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	146, 187, 635
BstDEI	CTNAG	4 cut(s)	111, 123, 302, 480
BstF5I	GGATG	2 cut(s)	550, 619
BstFNI	CGCG	2 cut(s)	144, 146
BstHHI	GCGC	2 cut(s)	146, 148
BstMAI	GTCTC	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	144, 146
BstV1I	GCAGC	3 cut(s)	38, 391, 539
BstV2I	GAAGAC	2 cut(s)	243, 446
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	185, 278
BtsCI	GGATG	2 cut(s)	550, 619
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	146, 187, 635
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	146, 148
Cfr13I	GGNCC	3 cut(s)	57, 136, 184
Csp6I	GTAC	3 cut(s)	295, 321, 457
CviAII	CATG	2 cut(s)	223, 337
CviQI	GTAC	3 cut(s)	295, 321, 457
DdeI	CTNAG	4 cut(s)	111, 123, 302, 480
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	276
EciI	GGCGGA	2 cut(s)	128, 201
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	57, 136
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	226, 340
FaiI	YATR	8 cut(s)	224, 292, 338, 372, 374, 376, 492, 521
FatI	CATG	2 cut(s)	222, 336
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	27, 120, 142, 345, 405, 528
FokI	GGATG	2 cut(s)	557, 626
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	27, 120, 142, 345, 405, 528
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	145, 147
GluI	GCNGC	6 cut(s)	27, 120, 142, 345, 405, 528
HaeIII	GGCC	2 cut(s)	185, 278
HhaI	GCGC	2 cut(s)	146, 148
Hin1II	CATG	2 cut(s)	226, 340
Hin6I	GCGC	2 cut(s)	144, 146
HinP1I	GCGC	2 cut(s)	144, 146
HinfI	GANTC	5 cut(s)	109, 158, 623, 659, 668
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	114, 272, 544, 658, 664, 673
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	3 cut(s)	109, 245, 263
HpyAV	CCTTC	3 cut(s)	421, 592, 668
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	2 cut(s)	407, 617
HpyF3I	CTNAG	4 cut(s)	111, 123, 302, 480
Hsp92II	CATG	2 cut(s)	226, 340
HspAI	GCGC	2 cut(s)	144, 146
KpnI	GGTACC	1 cut(s)	298
LpnPI	CCDG	9 cut(s)	59, 64, 119, 134, 203, 231, 300, 347, 677
Lsp1109I	GCAGC	3 cut(s)	38, 391, 539
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	393
MboII	GAAGA	5 cut(s)	77, 248, 451, 677, 698
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	2 cut(s)	501, 549
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	2 cut(s)	103, 668
MnlI	CCTC	5 cut(s)	48, 219, 225, 261, 550
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	29
MvnI	CGCG	2 cut(s)	144, 146
NlaIII	CATG	2 cut(s)	226, 340
NlaIV	GGNNCC	2 cut(s)	59, 296
PaeR7I	CTCGAG	1 cut(s)	52
PagI	TCATGA	1 cut(s)	336
PauI	GCGCGC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	158, 623, 668
PkrI	GCNGC	6 cut(s)	28, 121, 143, 346, 406, 529
PleI	GAGTC	2 cut(s)	103, 667
PpsI	GAGTC	2 cut(s)	103, 667
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	59, 296
PspPI	GGNCC	3 cut(s)	57, 136, 184
PspPPI	RGGWCCY	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	479
PteI	GCGCGC	1 cut(s)	144
RsaI	GTAC	3 cut(s)	296, 322, 458
RsaNI	GTAC	3 cut(s)	295, 321, 457
RseI	CAYNNNNRTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	6 cut(s)	27, 120, 142, 345, 405, 528
Sau96I	GGNCC	3 cut(s)	57, 136, 184
SchI	GAGTC	2 cut(s)	103, 668
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	405
Sfr274I	CTCGAG	1 cut(s)	52
SinI	GGWCC	2 cut(s)	57, 136
SlaI	CTCGAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	501, 549
SsiI	CCGC	8 cut(s)	29, 119, 139, 142, 187, 212, 345, 469
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	3 cut(s)	47, 53, 507
TasI	AATT	2 cut(s)	501, 549
TauI	GCSGC	3 cut(s)	122, 144, 347
TfiI	GAWTC	3 cut(s)	158, 623, 668
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseI	GCWGC	3 cut(s)	26, 404, 527
TspGWI	ACGGA	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	57, 136
XhoI	CTCGAG	1 cut(s)	52
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.