Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011089

Physical Location & Seq

Genomic Coordinates Reverse (-)

11379054 .. 11381243

Gene Structure 2190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTGTATGAAACCAACACCTGTACCACGAAAGCACCATCGTGGCACAACAGATGGCCACATCAGCAGCTTCCCATGTGGGCCCCGGCATCTCCTATCCCATGCATTATGGGCTGCCACGTGTATGGCGGCGAAGCAACTGTCTTTCGGAATCGAAAACCAGAGTCTGAAGAAGAAGCTGTGGATAAGAGAGACCTTGAAGTGGTTCGGCTTCCACTATCGAATTCAAGAACCCATGAAGACGGTTTGGTCAGGCACTCACTGGTGTCCTCAAAAACGACCCAGAAAGCTTGTAAGCAAAGCCATGGCCAAGCACTGGTGATTGAAGCAAAGGGCAAAAAGGGAATGCAAGATCGTCAGTTCCAGAGGCGTCAACCTCCTCCCATGCCCAAGATTGAAGACGATGGCAACCCACGTTTCGTTGTGTTTATTCGAATGGCCAATGTTTACCTATGGTACCCACTTAGTGTGATCTCTGGTGGAACCACGGCAAAAATCATGCTTGCAGCGAAAGATAATTTTCTGGGGAAATATATATACAAAGATACACTTGCTAGAAATCTTGCAGCAGTTATTTACCGAGATGAGAAGGAAATACAGAAGACAGCGTTCAAGCAGTATCGTGTATTGCGGTCAGCGACTGAGTTTAGATATGGCTACAAGATTGTGGAAAATGGTAATATGAGAGCAGCACTTTCAACGTCAGATGTAATTGAGCTTCCAACACCAGACCAACTTAGAACCACTCTTGATAAAGTGAAAGATTTTTTTGGGGAAGCAAAGGAATCTTTTGGCAAGCTGACGGCTATAAGTTCATCCGAGTCTGAGGAATCAGAACAAAAAATTGAAAAACCCAAGGAAAAGGTTAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

33.19

Weight (kDa)

9.38

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHL1-like	PF20133	113 - 257	1e-10	Protein HHL1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67700 AT1G67700 AT1G67700 AT1G67700 AT1G67700
fragaria_vesca	FvH4_4g24830
malus_domestica	MD13G1108600.v1.1
prunus_persica	Prupe.1G237600_v2.0.a1
pyrus_communis	pycom13g09410
rosa_chinensis	RchiOBHm_Chr4g0431911
rosa_laevigata	RLG00000006876
rosa_multiflora	Rmu_sc0004965.1_g000007
rosa_roxburghii	Rroxscaffold_5G00373340
rosa_rugosa	Rorug04G0253000 Rorug04G0253000
rosa_samantha	Rh4AG310200 Rh4BG317300 Rh4CG332600 Rh4DG312200
rosa_wichuraiana	Rw4G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	2 cut(s)	129, 631
AcoI	YGGCCR	3 cut(s)	56, 307, 438
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	25, 458
AfiI	CCNNNNNNNGG	2 cut(s)	202, 316
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	7 cut(s)	200, 228, 326, 398, 613, 699, 848
AleI	CACNNNNGTG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	70, 179, 290, 718, 799
AluI	AGCT	5 cut(s)	70, 179, 290, 718, 799
Alw26I	GTCTC	1 cut(s)	186
AlwNI	CAGNNNCTG	2 cut(s)	167, 641
AoxI	GGCC	4 cut(s)	56, 81, 307, 438
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	5 cut(s)	67, 114, 506, 566, 689
ApoI	RAATTY	1 cut(s)	223
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
Asp700I	GAANNNNTTC	1 cut(s)	204
Asp718I	GGTACC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	81, 82
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BalI	TGGCCA	3 cut(s)	58, 309, 440
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbrPI	CACGTG	1 cut(s)	121
BbsI	GAAGAC	3 cut(s)	246, 405, 608
BbvI	GCAGC	5 cut(s)	79, 101, 518, 578, 701
BccI	CCATC	3 cut(s)	46, 48, 398
BceAI	ACGGC	2 cut(s)	504, 819
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	555
BisI	GCNGC	6 cut(s)	68, 115, 130, 507, 567, 690
BlsI	GCNGC	6 cut(s)	69, 116, 131, 508, 568, 691
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	81, 82
BmiI	GGNNCC	4 cut(s)	83, 84, 458, 484
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	3 cut(s)	246, 405, 608
Bpu14I	TTCGAA	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	4 cut(s)	84, 304, 486, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 316
Bse1I	ACTGG	2 cut(s)	267, 321
BseDI	CCNNGG	4 cut(s)	84, 304, 486, 855
BseGI	GGATG	1 cut(s)	815
BseLI	CCNNNNNNNGG	2 cut(s)	202, 316
BseMII	CTCAG	2 cut(s)	633, 816
BseNI	ACTGG	2 cut(s)	267, 321
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	5 cut(s)	79, 101, 518, 578, 701
BshFI	GGCC	4 cut(s)	58, 83, 309, 440
BshNI	GGYRCC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	202, 316
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	4 cut(s)	58, 83, 309, 440
Bso31I	GGTCTC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	433
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	352, 471
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	129, 631
BspANI	GGCC	4 cut(s)	58, 83, 309, 440
BspCNI	CTCAG	2 cut(s)	634, 817
BspLI	GGNNCC	4 cut(s)	83, 84, 458, 484
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	267, 321
BssECI	CCNNGG	4 cut(s)	84, 304, 486, 855
BssMI	GATC	2 cut(s)	352, 471
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	304, 855
Bst4CI	ACNGT	2 cut(s)	142, 245
BstACI	GRCGYC	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	504, 797
BstDEI	CTNAG	4 cut(s)	464, 642, 737, 825
BstDSI	CCRYGG	2 cut(s)	304, 486
BstF5I	GGATG	1 cut(s)	815
BstKTI	GATC	2 cut(s)	355, 474
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	352, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 111
BstSCI	CCNGG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	5 cut(s)	79, 101, 518, 578, 701
BstV2I	GAAGAC	3 cut(s)	246, 405, 608
BstXI	CCANNNNNNTGG	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	58, 83, 309, 440
BtgI	CCRYGG	2 cut(s)	304, 486
BtsCI	GGATG	1 cut(s)	815
BtsIMutI	CAGTG	2 cut(s)	260, 314
Cac8I	GCNNGC	2 cut(s)	504, 797
CaiI	CAGNNNCTG	2 cut(s)	167, 641
Cfr13I	GGNCC	2 cut(s)	81, 82
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	24, 457
CviAII	CATG	6 cut(s)	76, 102, 236, 305, 385, 499
CviQI	GTAC	2 cut(s)	24, 457
DdeI	CTNAG	4 cut(s)	464, 642, 737, 825
DpnI	GATC	2 cut(s)	354, 473
DpnII	GATC	2 cut(s)	352, 471
DraIII	CACNNNGTG	1 cut(s)	467
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	3 cut(s)	56, 307, 438
Eco130I	CCWWGG	2 cut(s)	304, 855
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	189
Eco72I	CACGTG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	304, 855
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	304, 855
FaeI	CATG	6 cut(s)	79, 105, 239, 308, 388, 502
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	6 cut(s)	75, 101, 235, 304, 384, 498
Fnu4HI	GCNGC	6 cut(s)	68, 115, 130, 507, 567, 690
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	6 cut(s)	68, 115, 130, 507, 567, 690
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	6 cut(s)	68, 115, 130, 507, 567, 690
HaeIII	GGCC	4 cut(s)	58, 83, 309, 440
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	79, 105, 239, 308, 388, 502
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	5 cut(s)	151, 164, 785, 821, 830
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	374, 448
Hpy188I	TCNGA	6 cut(s)	150, 169, 706, 820, 826, 835
Hpy188III	TCNNGA	3 cut(s)	228, 364, 749
Hpy8I	GTNNAC	2 cut(s)	374, 448
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	2 cut(s)	142, 245
HpyCH4IV	ACGT	3 cut(s)	120, 415, 701
HpyCH4V	TGCA	4 cut(s)	105, 349, 506, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 111
HpyF3I	CTNAG	4 cut(s)	464, 642, 737, 825
HpySE526I	ACGT	3 cut(s)	120, 415, 701
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	6 cut(s)	79, 105, 239, 308, 388, 502
KpnI	GGTACC	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	352, 471
Lsp1109I	GCAGC	5 cut(s)	79, 101, 518, 578, 701
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	3 cut(s)	120, 415, 701
MalI	GATC	2 cut(s)	354, 473
MboI	GATC	2 cut(s)	352, 471
MboII	GAAGA	5 cut(s)	182, 185, 251, 410, 613
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	3 cut(s)	58, 309, 440
MluCI	AATT	4 cut(s)	223, 517, 711, 843
MluNI	TGGCCA	3 cut(s)	58, 309, 440
MlyI	GAGTC	2 cut(s)	173, 830
MmeI	TCCRAC	1 cut(s)	746
MnlI	CCTC	5 cut(s)	280, 360, 387, 390, 820
Mox20I	TGGCCA	3 cut(s)	58, 309, 440
Mph1103I	ATGCAT	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	3 cut(s)	58, 309, 440
MseI	TTAA	1 cut(s)	867
MslI	CAYNNNNRTG	2 cut(s)	40, 123
Msp20I	TGGCCA	3 cut(s)	58, 309, 440
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	64, 111
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	2 cut(s)	352, 471
NlaIII	CATG	6 cut(s)	79, 105, 239, 308, 388, 502
NlaIV	GGNNCC	4 cut(s)	83, 84, 458, 484
NsiI	ATGCAT	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	40
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	151, 785, 830
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	6 cut(s)	69, 116, 131, 508, 568, 691
PleI	GAGTC	2 cut(s)	172, 829
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	2 cut(s)	172, 829
Ppu21I	YACGTR	1 cut(s)	121
PspCI	CACGTG	1 cut(s)	121
PspN4I	GGNNCC	4 cut(s)	83, 84, 458, 484
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	81, 82
PstNI	CAGNNNCTG	2 cut(s)	167, 641
RsaI	GTAC	2 cut(s)	25, 458
RsaNI	GTAC	2 cut(s)	24, 457
RseI	CAYNNNNRTG	2 cut(s)	40, 123
SaqAI	TTAA	1 cut(s)	867
SatI	GCNGC	6 cut(s)	68, 115, 130, 507, 567, 690
Sau3AI	GATC	2 cut(s)	352, 471
Sau96I	GGNCC	2 cut(s)	81, 82
SchI	GAGTC	2 cut(s)	173, 830
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	40, 123
Sse9I	AATT	4 cut(s)	223, 517, 711, 843
SsiI	CCGC	2 cut(s)	129, 631
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	304, 855
TaaI	ACNGT	2 cut(s)	142, 245
TaiI	ACGT	3 cut(s)	123, 418, 704
TaqI	TCGA	3 cut(s)	154, 221, 433
TasI	AATT	4 cut(s)	223, 517, 711, 843
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	151, 785, 830
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	2 cut(s)	267, 321
TseI	GCWGC	5 cut(s)	67, 114, 506, 566, 689
TspDTI	ATGAA	3 cut(s)	24, 252, 804
TspRI	CASTG	2 cut(s)	267, 321
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.