pycom13g10550

Calmodulin-binding transcription activator

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
7062043 .. 7063898
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10550.3

Sequence Viewer

Length: 1347 bp
ATGCTTACGTATGATTCATCAGTGCAGAAAAGGGACAGTGCTGGGTCTGAGTCCTTGAGGAAATTGAAAGCTGATGATGATTCATGGGGTACTATCATTGAATCCCTGTTACTCGGCAATGGAAGTTCATCTACTACCATATATTGGCTTTTGGAAGTGCTACTGAAAGACAAGTTGCAGCAATGGCTTTCTTCCAGATCCCATGAATTTGACCAGTATGGTTGTTGCTTGTCCAAGAAAGAGCAAGGGATAATACACATGATTGCTGGTTTGGGATTTGAGTGGGCCTTAAACCCGATACTAAATTGTGGAGTCAATATAAATTTCCGTGACATAAACGGATGGACTGCTCTACACTGGGCTGCTCGTTTTGGAAGGGAAAAGATGGTTGCCATACTTGTAGCTTCTGGTGCATCAGCTGGAGCGGTGACAGATCCCAGTTCCCAAGATCCAGTTGGAAGAACTGCGGCATCTATTGCAGCCATCAATGCGCATAAGGGACTTGCAGGTTATCTTTCAGAGCTGTCACTGACTAGTCATCTGTCCTCCCTTACACTGGAAGAAACTGAGCTTTCCAAAGGTTCAGCTGAGGTTGAAGCAGAAATAACAGTAAACAGCATCTCAAATAGAAGCCTCGAGGGCAGTGAGGACCAGGAGTCACTTAAAAACACCTTGGCTGCAGTCCGGAATGCAGCCCAGGCTGCAGCACGCATACAGTCTGCTTTCCGGGCGCATTCTTTCAGAAAACGGCAACTGAAAGAAGCTGGTGTTAGTATAGATGACTATGGTATCAGTTCAGATGACATTTCAGTGTTTTCAAAGCTAAGCTTTCGCAATCCGCGTGATTACAATTCAGCTGCAGTATCTATTCAAAAGAAATATCGTGCGTATAAAGGCCGCAAAGATTTCCTCGTTCTCCGCCAGAAAGTTGTGAAGATACAGGCGCATGTGAGAGGTTATCAGGTGAGGAAGCACTACAAGGTAATTTGCTGGGCTGTTGGAATTCTGGACAAGGTTGTACTAAGGTGGCGAAGGAAAGGAGCTGGTTTGCGTGGCTTTCGGCAGGAGACACAGACCGATGAAGAAAGTGAAGATGAAGATATTCTCAAGGTGTTCCGCAAACAAAAAGTCAATGTAGCCATTGAGGAGGCAGTCTCGCGCGTGCTGTCCATGGTTGAGTCTCCTAAGGCACGCCAGCAATATCATCGCATGCTGACGAGGTACCATCAAGCTAAGGCTGAACTAGGAGGCACTAGCGGTGAAGGTTTCGGTGCTGAAGCAGAGACACCACTTTCCGGTGAAGATGACTTAAGTGTAGACGACATTGATATGTACCTATTTCCGTAG

Protein Analysis

449

Amino Acids

49.7

Weight (kDa)

8.17

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010895)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 635
Acc16I TGCGCA 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 1221
AccB1I GGYRCC 1 cut(s) 1221
AccB7I CCANNNNNTGG 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 1317
AccII CGCG 3 cut(s) 841, 1159, 1161
AccIII TCCGGA 1 cut(s) 684
AciI CCGC 7 cut(s) 425, 467, 839, 898, 919, 1117, 1257
AclWI GGATC 3 cut(s) 192, 428, 443
AcsI RAATTY 3 cut(s) 206, 322, 1002
AcuI CTGAAG 1 cut(s) 1296
AfaI GTAC 4 cut(s) 91, 1020, 1223, 1334
AfiI CCNNNNNNNGG 3 cut(s) 144, 556, 1295
AflII CTTAAG 1 cut(s) 1309
AgsI TTSAA 5 cut(s) 67, 101, 596, 819, 872
AhdI GACNNNNNGTC 1 cut(s) 655
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 2 cut(s) 651, 696
Alw26I GTCTC 4 cut(s) 1061, 1159, 1185, 1277
AlwI GGATC 3 cut(s) 192, 428, 443
Ama87I CYCGRG 1 cut(s) 635
Aor13HI TCCGGA 1 cut(s) 684
AoxI GGCC 2 cut(s) 285, 895
ApeKI GCWGC 8 cut(s) 178, 362, 479, 677, 692, 701, 704, 857
ApoI RAATTY 3 cut(s) 206, 322, 1002
ArsI GACNNNNNNTTYG 2 cut(s) 1113, 1145
Asp700I GAANNNNTTC 1 cut(s) 1101
Asp718I GGTACC 1 cut(s) 1221
AspLEI GCGC 4 cut(s) 493, 733, 946, 1161
AspS9I GGNCC 2 cut(s) 285, 649
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 4 cut(s) 439, 976, 1271, 1310
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 649
AxyI CCTNAGG 1 cut(s) 1185
BaeI ACNNNNGTAYC 2 cut(s) 772, 805
BanI GGYRCC 1 cut(s) 1221
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 8 cut(s) 190, 349, 491, 664, 688, 704, 716, 844
BccI CCATC 4 cut(s) 336, 379, 491, 1233
BceAI ACGGC 1 cut(s) 764
BcgI CGANNNNNNTGC 2 cut(s) 1187, 1221
BciT130I CCWGG 2 cut(s) 653, 698
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 4 cut(s) 1061, 1159, 1185, 1277
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 3 cut(s) 534, 1244, 1254
BfmI CTRYAG 3 cut(s) 678, 702, 858
BfrI CTTAAG 1 cut(s) 1309
BfuAI ACCTGC 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 639
BlpI GCTNAGC 1 cut(s) 824
Bme1390I CCNGG 3 cut(s) 653, 698, 728
Bme18I GGWCC 1 cut(s) 649
BmeRI GACNNNNNGTC 1 cut(s) 655
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 2 cut(s) 285, 649
BmiI GGNNCC 1 cut(s) 1223
BmrFI CCNGG 3 cut(s) 653, 698, 728
BmrI ACTGGG 2 cut(s) 367, 432
BmsI GCATC 3 cut(s) 422, 479, 627
BmuI ACTGGG 2 cut(s) 367, 432
BplI GAGNNNNNCTC 2 cut(s) 1139, 1171
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 2 cut(s) 588, 1233
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 2 cut(s) 76, 1091
BpuMI CCSGG 1 cut(s) 728
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 672, 696, 1170
BsaWI WCCGGW 2 cut(s) 684, 1295
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 556, 1295
Bse1I ACTGG 5 cut(s) 214, 362, 438, 452, 561
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 2 cut(s) 124, 188
BseAI TCCGGA 1 cut(s) 684
BseBI CCWGG 2 cut(s) 653, 698
BseDI CCNNGG 3 cut(s) 672, 696, 1170
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 144, 556, 1295
BseMI GCAATG 2 cut(s) 124, 188
BseMII CTCAG 3 cut(s) 39, 558, 579
BseNI ACTGG 5 cut(s) 214, 362, 438, 452, 561
BseRI GAGGAG 1 cut(s) 1160
BseXI GCAGC 8 cut(s) 190, 349, 491, 664, 688, 704, 716, 844
BseYI CCCAGC 2 cut(s) 41, 990
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 3 cut(s) 841, 1159, 1161
BshFI GGCC 2 cut(s) 287, 897
BshNI GGYRCC 1 cut(s) 1221
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 3 cut(s) 685, 727, 1296
BslFI GGGAC 2 cut(s) 47, 513
BslI CCNNNNNNNGG 3 cut(s) 144, 556, 1295
BsmAI GTCTC 4 cut(s) 1061, 1159, 1185, 1277
BsmFI GGGAC 2 cut(s) 47, 513
BsmI GAATGC 2 cut(s) 694, 733
BsnI GGCC 2 cut(s) 287, 897
BsoBI CYCGRG 1 cut(s) 635
Bsp13I TCCGGA 1 cut(s) 684
Bsp143I GATC 3 cut(s) 197, 433, 448
Bsp1720I GCTNAGC 1 cut(s) 824
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 7 cut(s) 425, 467, 839, 898, 919, 1117, 1257
BspANI GGCC 2 cut(s) 287, 897
BspCNI CTCAG 3 cut(s) 40, 559, 580
BspEI TCCGGA 1 cut(s) 684
BspFNI CGCG 3 cut(s) 841, 1159, 1161
BspLI GGNNCC 1 cut(s) 1223
BspMAI CTGCAG 3 cut(s) 682, 706, 862
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 3 cut(s) 192, 428, 443
BspT107I GGYRCC 1 cut(s) 1221
BspTI CTTAAG 1 cut(s) 1309
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 124, 188
BsrI ACTGG 5 cut(s) 214, 362, 438, 452, 561
BssECI CCNNGG 3 cut(s) 672, 696, 1170
BssMI GATC 3 cut(s) 197, 433, 448
BssT1I CCWWGG 2 cut(s) 672, 1170
Bst2UI CCWGG 2 cut(s) 653, 698
Bst4CI ACNGT 3 cut(s) 38, 610, 717
BstAFI CTTAAG 1 cut(s) 1309
BstAPI GCANNNNNTGC 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 5 cut(s) 709, 1163, 1192, 1196, 1211
BstDEI CTNAG 7 cut(s) 48, 567, 588, 824, 1022, 1185, 1233
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 1 cut(s) 347
BstFNI CGCG 3 cut(s) 841, 1159, 1161
BstHHI GCGC 4 cut(s) 493, 733, 946, 1161
BstKTI GATC 3 cut(s) 200, 436, 451
BstMAI GTCTC 4 cut(s) 1061, 1159, 1185, 1277
BstMBI GATC 3 cut(s) 197, 433, 448
BstMWI GCNNNNNNNGC 8 cut(s) 184, 410, 476, 488, 639, 698, 701, 728
BstNI CCWGG 2 cut(s) 653, 698
BstNSI RCATGY 2 cut(s) 950, 1213
BstSCI CCNGG 3 cut(s) 651, 696, 726
BstSFI CTRYAG 3 cut(s) 678, 702, 858
BstSNI TACGTA 1 cut(s) 9
BstUI CGCG 3 cut(s) 841, 1159, 1161
BstV1I GCAGC 8 cut(s) 190, 349, 491, 664, 688, 704, 716, 844
BstX2I RGATCY 3 cut(s) 197, 433, 448
BstYI RGATCY 3 cut(s) 197, 433, 448
Bsu36I CCTNAGG 1 cut(s) 1185
BsuRI GGCC 2 cut(s) 287, 897
BtgI CCRYGG 1 cut(s) 1170
BtgZI GCGATG 1 cut(s) 1190
BtsCI GGATG 1 cut(s) 347
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 7 cut(s) 27, 43, 355, 527, 554, 649, 816
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 5 cut(s) 709, 1163, 1192, 1196, 1211
CfoI GCGC 4 cut(s) 493, 733, 946, 1161
Cfr13I GGNCC 2 cut(s) 285, 649
Csp6I GTAC 4 cut(s) 90, 1019, 1222, 1333
CviAII CATG 6 cut(s) 84, 203, 259, 947, 1171, 1210
CviQI GTAC 4 cut(s) 90, 1019, 1222, 1333
DdeI CTNAG 7 cut(s) 48, 567, 588, 824, 1022, 1185, 1233
DpnI GATC 3 cut(s) 199, 435, 450
DpnII GATC 3 cut(s) 197, 433, 448
DriI GACNNNNNGTC 1 cut(s) 655
Eam1105I GACNNNNNGTC 1 cut(s) 655
EciI GGCGGA 1 cut(s) 908
Eco105I TACGTA 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 672, 1170
Eco47I GGWCC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 1296
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 1002
EcoRII CCWGG 2 cut(s) 651, 696
EcoT14I CCWWGG 2 cut(s) 672, 1170
ErhI CCWWGG 2 cut(s) 672, 1170
FaeI CATG 6 cut(s) 87, 206, 262, 950, 1174, 1213
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 2 cut(s) 47, 513
FatI CATG 6 cut(s) 83, 202, 258, 946, 1170, 1209
FblI GTMKAC 1 cut(s) 1317
FokI GGATG 1 cut(s) 354
FspAI RTGCGCAY 1 cut(s) 492
FspBI CTAG 3 cut(s) 534, 1244, 1254
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 4 cut(s) 492, 732, 945, 1160
GsaI CCCAGC 2 cut(s) 45, 994
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 287, 897
HapII CCGG 3 cut(s) 685, 727, 1296
HhaI GCGC 4 cut(s) 493, 733, 946, 1161
Hin1II CATG 6 cut(s) 87, 206, 262, 950, 1174, 1213
Hin6I GCGC 4 cut(s) 491, 731, 944, 1159
HinP1I GCGC 4 cut(s) 491, 731, 944, 1159
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 7 cut(s) 14, 50, 80, 101, 312, 656, 1178
HpaII CCGG 3 cut(s) 685, 727, 1296
HphI GGTGA 4 cut(s) 439, 976, 1271, 1310
Hpy166II GTNNAC 2 cut(s) 613, 1318
Hpy188I TCNGA 4 cut(s) 49, 520, 743, 799
Hpy188III TCNNGA 3 cut(s) 195, 685, 1007
Hpy8I GTNNAC 2 cut(s) 613, 1318
HpyAV CCTTC 3 cut(s) 369, 1026, 1256
HpyCH4III ACNGT 3 cut(s) 38, 610, 717
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 9 cut(s) 25, 178, 413, 479, 506, 680, 692, 704, 860
HpyF10VI GCNNNNNNNGC 8 cut(s) 184, 410, 476, 488, 639, 698, 701, 728
HpyF3I CTNAG 7 cut(s) 48, 567, 588, 824, 1022, 1185, 1233
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 6 cut(s) 87, 206, 262, 950, 1174, 1213
HspAI GCGC 4 cut(s) 491, 731, 944, 1159
Kpn2I TCCGGA 1 cut(s) 684
KpnI GGTACC 1 cut(s) 1225
Kzo9I GATC 3 cut(s) 197, 433, 448
LmnI GCTCC 2 cut(s) 422, 1040
Lsp1109I GCAGC 8 cut(s) 190, 349, 491, 664, 688, 704, 716, 844
LweI GCATC 3 cut(s) 422, 479, 627
MaeI CTAG 3 cut(s) 534, 1244, 1254
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 5 cut(s) 108, 329, 427, 525, 657
MalI GATC 3 cut(s) 199, 435, 450
MbiI CCGCTC 1 cut(s) 425
MboI GATC 3 cut(s) 197, 433, 448
MboII GAAGA 8 cut(s) 183, 471, 572, 946, 1094, 1103, 1109, 1313
MflI RGATCY 3 cut(s) 197, 433, 448
MluCI AATT 7 cut(s) 62, 206, 304, 322, 850, 984, 1002
MlyI GAGTC 4 cut(s) 59, 321, 665, 1187
MmeI TCCRAC 2 cut(s) 436, 979
MroI TCCGGA 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 1101
MseI TTAA 3 cut(s) 290, 663, 1310
MslI CAYNNNNRTG 2 cut(s) 809, 1328
MspA1I CMGCKG 3 cut(s) 419, 587, 857
MspCI CTTAAG 1 cut(s) 1309
MspI CCGG 3 cut(s) 685, 727, 1296
MspR9I CCNGG 3 cut(s) 653, 698, 728
Mva1269I GAATGC 2 cut(s) 694, 733
MvaI CCWGG 2 cut(s) 653, 698
MvnI CGCG 3 cut(s) 841, 1159, 1161
MwoI GCNNNNNNNGC 8 cut(s) 184, 410, 476, 488, 639, 698, 701, 728
NciI CCSGG 1 cut(s) 728
NcoI CCATGG 1 cut(s) 1170
NdeII GATC 3 cut(s) 197, 433, 448
NlaIII CATG 6 cut(s) 87, 206, 262, 950, 1174, 1213
NlaIV GGNNCC 1 cut(s) 1223
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 4 cut(s) 329, 427, 525, 657
NsbI TGCGCA 1 cut(s) 492
NspI RCATGY 2 cut(s) 950, 1213
PaeI GCATGC 1 cut(s) 1213
PaeR7I CTCGAG 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PctI GAATGC 2 cut(s) 694, 733
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 3 cut(s) 14, 80, 101
PflMI CCANNNNNTGG 1 cut(s) 144
PleI GAGTC 4 cut(s) 58, 320, 664, 1186
PpsI GAGTC 4 cut(s) 58, 320, 664, 1186
Ppu21I YACGTR 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 651, 696
PspFI CCCAGC 2 cut(s) 41, 990
PspGI CCWGG 2 cut(s) 651, 696
PspN4I GGNNCC 1 cut(s) 1223
PspPI GGNCC 2 cut(s) 285, 649
PspXI VCTCGAGB 1 cut(s) 635
PstI CTGCAG 3 cut(s) 682, 706, 862
PsuI RGATCY 3 cut(s) 197, 433, 448
PvuII CAGCTG 3 cut(s) 419, 587, 857
RsaI GTAC 4 cut(s) 91, 1020, 1223, 1334
RsaNI GTAC 4 cut(s) 90, 1019, 1222, 1333
RseI CAYNNNNRTG 2 cut(s) 809, 1328
SaqAI TTAA 3 cut(s) 290, 663, 1310
Sau3AI GATC 3 cut(s) 197, 433, 448
Sau96I GGNCC 2 cut(s) 285, 649
SchI GAGTC 4 cut(s) 59, 321, 665, 1187
ScrFI CCNGG 3 cut(s) 653, 698, 728
SfaNI GCATC 3 cut(s) 422, 479, 627
SfcI CTRYAG 3 cut(s) 678, 702, 858
Sfr274I CTCGAG 1 cut(s) 635
SinI GGWCC 1 cut(s) 649
SlaI CTCGAG 1 cut(s) 635
SmiMI CAYNNNNRTG 2 cut(s) 809, 1328
SmlI CTYRAG 4 cut(s) 55, 635, 1106, 1309
SmoI CTYRAG 4 cut(s) 55, 635, 1106, 1309
SnaBI TACGTA 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 533
SphI GCATGC 1 cut(s) 1213
Sse9I AATT 7 cut(s) 62, 206, 304, 322, 850, 984, 1002
SsiI CCGC 7 cut(s) 425, 467, 839, 898, 919, 1117, 1257
SspMI CTAG 3 cut(s) 534, 1244, 1254
StyD4I CCNGG 3 cut(s) 651, 696, 726
StyI CCWWGG 2 cut(s) 672, 1170
TaaI ACNGT 3 cut(s) 38, 610, 717
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 636
TaqII GACCGA 1 cut(s) 1091
TasI AATT 7 cut(s) 62, 206, 304, 322, 850, 984, 1002
TatI WGTACW 1 cut(s) 1018
TauI GCSGC 2 cut(s) 470, 900
TfiI GAWTC 3 cut(s) 14, 80, 101
Tru1I TTAA 3 cut(s) 290, 663, 1310
Tru9I TTAA 3 cut(s) 290, 663, 1310
TscAI CASTG 7 cut(s) 27, 43, 362, 534, 561, 649, 816
TseFI GTSAC 4 cut(s) 329, 427, 525, 657
TseI GCWGC 8 cut(s) 178, 362, 479, 677, 692, 701, 704, 857
Tsp45I GTSAC 4 cut(s) 329, 427, 525, 657
TspDTI ATGAA 6 cut(s) 6, 72, 117, 219, 1095, 1110
TspGWI ACGGA 3 cut(s) 317, 354, 1332
TspRI CASTG 7 cut(s) 27, 43, 362, 534, 561, 649, 816
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 1309
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 3 cut(s) 206, 322, 1002
XceI RCATGY 2 cut(s) 950, 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 1317
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 3 cut(s) 534, 1244, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.