Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010895

Physical Location & Seq

Genomic Coordinates Forward (+)

60961457 .. 60967206

Gene Structure 5750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGCAATCAGGCTCAGGATATAATATTAATGACCTCTTTCAAGAGGCTCAAAGCCGGTGGCTGAAGCCGGCCGAAGTGCTATTCATATTGCAGAATCATGAGAAGTATAAGGTCACCCCAGAGCCTCCTCAACAACCTGTTAGTGGCTCTTTGTTTCTTTTTAACAAAAGGATCCTTCGGTTTTTCCGTAGAGACGGGCACCGTTGGCGTAAAAAGAAGGATGGGAGAACTGTTGGTGAAGCACATGAACGGCTTAAGGTTGGAAACGTAGAGACATTGAATTGTTATTATGCACATGGGGAGGACAATCCAAATTTTCAGAGGCGCAGCTATTGGATGTTGGATCCGGCATATGAGCACATTGTTCTTGTTCATTATAGGGAAATTAGTGAGGTGAAGCCTGGTACAGGATCGTTTATACAATCACCAGTTTCCTCTTCTTCCCTCAGCCAGAGTCCAATCTCGAATACTACACAACATCCAGGATCTGTCTCCATGATTAGTGAGTTGTATGAACCTTATACGAGTCCAGGTTCTGTAGAAGTTAGTTCAGATCTAGTCATCAAGAAAAATGGAAGAGATAGCGCAGAGAACTTATATAGAACAGGGGAGTCAGATAGTTCATCTAAGGCTGATGTTAGTCAAGCTTTGCGGCGACTAGAGGAGCAGTTAAGTTTAAATGATGATAGCTTCAACGAATTTGTGGATGATAATCCAGATGGTTCAGATATCCCGGAATACCCTAGTGATCAGTTTACTGCCTTCCATGGACAAGAACATATTGTTCACGATCAGTTCTATAGTGGGCATTCTCTGATGCAAGGGAATGCAGACAATAGTTCAGATATCTTGGATTACCATAATGATATCGTCAATCCGGATCAGTTTACTCCCTTCCATGGACCAGAACACATTGTAAATGATCAGTTTTACAGTGGACGTACTCAGATGCAAAGTAACGTAGACCTTAGTGGTAAACATCATCAATTAATTGGTCATGAATTTGCAGATGGAAACAAAGAATCAGCATCTTGGAAGGAGGTTCTGAATTCATCTAAGACTTCATCAGTTGTGGAGCCCCAGGAGACAGGCTTGTATACATTGGACAGAAGTGAAAAACTATCTTCATCATTGACTGGTCCAAATGGGGCGTTTGAATATCCTTCTTTGTCGCGTCCTCAAGAAGTTGACATTTTCAAGTCTCCATTTTCATCTGCAATAGAAACACATTCAGACTACTTTACATCATTTTTTGAGCAAGGACAAATGGGAAATCTTGAATCAGATATCAGTTTGACTGTTGCACAGACGCAAAAATTTACAATTCGGGAAATTTCTCCAGAATGGGGTGATGCCAACGAACCCACAAAGGTCATTGTTATTGGATCTTTTCTGTGCGATCCATCAGAATCCGCGTGGACTTGTATGTTTGGCAACGTTGAAGTTCCTGCTCAGATCATTCAGGAAGGTGTAATCCGTTGTGAAGCTCCCCCTCACCTTCCCGGGAAGGTGACACTCTGCATTACTTCAGGCAATCGGGAGTCCTGCAGTGAAGTTAGGGAATTTGAGTATCGCGTTAAGAGCAGTAGATCTACTCCAAATAATTCACCTCCAAAAGAATCTAGTAGGAGTGCAGAAGAACTTTTATTACTTGTCAGATTCGCTCAAATTCTTTTGTCTGATTCATCGGTGCAGAAAAGCGACACTGTTGAGTCTGAGTTTGTGAGAAAATCAAAAGCTGACGATGATACTTGGGGTAGTATTATTGAGGCTCTCTTAGTAGGCAGTGGAAGTTCATCTAGTACCATATATTGGCTTCTGGAAGAGTTTCTAAAAGACAAGTTGGAGCAATGGCTTTCTTCCAGATCCCAGGGACTTGACCAGACAGATTGTTCCTTATCCAGGAAAGAGCAAGGCATGATACACATGGTTGCTGGGTTGGGCTTTGAGTGGGCAATTAACCCAATACTCAATCTTGGAGTCAATATAAATTTCCGGGATATAAACGGGTGGACTGCTCTACATTGGGCTGCGCGTTTTGGAAGGGAAAAGATGGTTGCTGTACTGGTTGCTTCTGGTGCATCAGCTGGAGCAGTGACAGACCCCAGTTCCCAAGATCCCATAGGCAAAACTCCGGCATCTATTGCAGCCATTCATGGGCATAAGGGACTTGCAGGTTATCTTTCAGAGGTGGCACTCACTAGCCATCTGTCATCCCTTACACTGGAAGAAAGTGAGATTTCCAGAGGCTGCGCTGAGATCGAAGCAGAAATAACAGTAAATAGCATCTCAAAGAGTAGCCTGGAGACTAATGAAGATCAGGCCCCCCTTAAGAACACCTTAGCTGCAGTCCGAAATGCAGCACAGGCTGCTGCACGCATACAATCTGCTTTTCGGGCGCATTCTTTCAGAAGACGACAACAGAAAGAAGCTGATGTTACTATAGATGATTATGGTATCAGTTCAGATGACATACTAGGCCTTTCAGCTATGTCAAAGCTAACCTTTCGTAATCCACGTGATTACAATTCAGCTGCATTATCTATCCAGAAGAAATACCGAGGCTGGAAAGGCCGCAAGGATTTCCTAGCGCTCCGCAAGAAAGTTGTCAAGATACAGGCACATGTGAGAGGTTATCAAGTTAGGAAGCACTACAAGGTAATCTGTTGGGCCGTTGGGATTCTGGACAAAGTTGTACTAAGGTGGCGGAGAAAAGGAGTTGGTCTGCGTGGTTTTCGGCATGAGGCAGAATCCACAGAATCAAGTGAAGACGAAGATATCCTCAAGGTTTTCCGCAAACAGAAAGTCGATGGAGCCATTGACGAGGCTGTCTCGCGGGTGTTGTCCATGGTCGAGTCCCCAGAGGCCCGTGAGCAATATCAGCGCATGCTGGAGAGGTACCATCAAGCTAAGGCTGAATTGGGTAGCACTAGTGGTGAAGCAGGACCACCAATTTCCCTCGAGGATTTCGTTAAGATGGAAGACATTGATATGTATCAGTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 CG-1 IQ TIG

Protein Analysis

1002

Amino Acids

112.04

Weight (kDa)

5.54

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CG-1	PF03859	15 - 128	1.2e-48	CG-1 domain
TIG	PF01833	441 - 517	4.1e-08	IPT/TIG domain
Ank_2	PF12796	642 - 729	1.2e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67310
fragaria_vesca	FvH4_4g23551 FvH4_4g23551
malus_domestica	MD13G1121200.v1.1 MD16G1121200.v1.1
prunus_persica	Prupe.1G224000_v2.0.a1 Prupe.1G224000_v2.0.a1 Prupe.1G224000_v2.0.a1
pyrus_communis	pycom13g10550 pycom16g10390
rosa_chinensis	RchiOBHm_Chr4g0429961
rosa_laevigata	RLG00000007017
rosa_multiflora	Rmu_ssc0000150.1_g000038
rosa_roxburghii	Rroxscaffold_5G00371790
rosa_rugosa	Rorug04G0239700
rosa_samantha	Rh4AG296100 Rh4BG302600 Rh4CG318100 Rh4DG299900
rosa_wichuraiana	Rw4G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2828
AbsI	CCTCGAGG	1 cut(s)	2960
Acc36I	ACCTGC	1 cut(s)	2165
Acc65I	GGTACC	1 cut(s)	2898
AccB1I	GGYRCC	2 cut(s)	198, 2898
AccB7I	CCANNNNNTGG	1 cut(s)	1812
AccI	GTMKAC	2 cut(s)	963, 1097
AccII	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	7 cut(s)	652, 1413, 2575, 2596, 2707, 2794, 2836
AclI	AACGTT	1 cut(s)	1437
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	9 cut(s)	313, 698, 1001, 1048, 1316, 1332, 1562, 1668, 1990
AcuI	CTGAAG	2 cut(s)	83, 1512
AcvI	CACGTG	1 cut(s)	2519
AfaI	GTAC	6 cut(s)	406, 943, 1804, 2064, 2697, 2900
AfeI	AGCGCT	1 cut(s)	2592
AfiI	CCNNNNNNNGG	8 cut(s)	143, 407, 899, 1346, 1812, 1902, 2157, 2224
AflII	CTTAAG	2 cut(s)	254, 2330
AflIII	ACRYGT	1 cut(s)	2623
AgsI	TTSAA	8 cut(s)	41, 280, 694, 1157, 1198, 1280, 1442, 3005
AhlI	ACTAGT	1 cut(s)	2930
AjnI	CCWGG	7 cut(s)	400, 481, 529, 1080, 1869, 1901, 2301
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	7 cut(s)	186, 266, 496, 1079, 1206, 2300, 2836
AlwNI	CAGNNNCTG	3 cut(s)	488, 536, 2250
Ama87I	CYCGRG	2 cut(s)	1502, 2960
Aor13HI	TCCGGA	1 cut(s)	877
Aor51HI	AGCGCT	1 cut(s)	2592
AoxI	GGCC	6 cut(s)	69, 2322, 2479, 2572, 2670, 2865
ApeKI	GCWGC	9 cut(s)	327, 2030, 2147, 2250, 2345, 2360, 2369, 2372, 2534
ApoI	RAATTY	9 cut(s)	313, 698, 1001, 1048, 1316, 1332, 1562, 1668, 1990
ArsI	GACNNNNNNTTYG	2 cut(s)	2790, 2822
AseI	ATTAAT	2 cut(s)	27, 989
Asp700I	GAANNNNTTC	1 cut(s)	1827
Asp718I	GGTACC	1 cut(s)	2898
AspLEI	GCGC	7 cut(s)	327, 587, 2035, 2255, 2401, 2593, 2886
AspS9I	GGNCC	6 cut(s)	902, 1139, 2323, 2670, 2866, 2945
AsuC2I	CCSGG	4 cut(s)	734, 1503, 1504, 1997
AsuHPI	GGTGA	9 cut(s)	106, 248, 406, 417, 1361, 1487, 1522, 1599, 2948
AvaI	CYCGRG	2 cut(s)	1502, 2960
AvaII	GGWCC	3 cut(s)	902, 1139, 2945
BaeGI	GKGCMC	1 cut(s)	201
BamHI	GGATCC	2 cut(s)	171, 343
BanI	GGYRCC	2 cut(s)	198, 2898
BanII	GRGCYC	1 cut(s)	1080
BbrPI	CACGTG	1 cut(s)	2519
BbsI	GAAGAC	3 cut(s)	2419, 2775, 2988
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	9 cut(s)	339, 2017, 2159, 2237, 2332, 2356, 2359, 2372, 2521
BccI	CCATC	9 cut(s)	215, 713, 1004, 1411, 2047, 2214, 2804, 2910, 2971
BceAI	ACGGC	2 cut(s)	266, 2657
BciT130I	CCWGG	7 cut(s)	402, 483, 531, 1082, 1871, 1903, 2303
BclI	TGATCA	2 cut(s)	748, 922
BcnI	CCSGG	4 cut(s)	734, 1503, 1504, 1997
BcoDI	GTCTC	7 cut(s)	186, 266, 496, 1079, 1206, 2300, 2836
BcuI	ACTAGT	1 cut(s)	2930
BfaI	CTAG	9 cut(s)	557, 659, 744, 1623, 1800, 2202, 2477, 2588, 2931
BfmI	CTRYAG	5 cut(s)	537, 799, 1546, 2346, 2442
BfoI	RGCGCY	1 cut(s)	2594
BfrI	CTTAAG	2 cut(s)	254, 2330
BfuAI	ACCTGC	1 cut(s)	2165
BglII	AGATCT	2 cut(s)	553, 1589
Bme18I	GGWCC	3 cut(s)	902, 1139, 2945
BmeT110I	CYCGRG	2 cut(s)	1502, 2960
BmgT120I	GGNCC	6 cut(s)	902, 1139, 2323, 2670, 2866, 2945
BmiI	GGNNCC	7 cut(s)	173, 200, 345, 1077, 2325, 2815, 2900
BmrI	ACTGGG	1 cut(s)	2100
BmsI	GCATC	7 cut(s)	807, 939, 1037, 1342, 2090, 2147, 2295
BmuI	ACTGGG	1 cut(s)	2100
BpiI	GAAGAC	3 cut(s)	2419, 2775, 2988
BplI	GAGNNNNNCTC	2 cut(s)	2816, 2848
BpmI	CTGGAG	4 cut(s)	1323, 2109, 2324, 2912
Bpu10I	CCTNAGC	4 cut(s)	13, 446, 2341, 2910
BpuEI	CTTGAG	2 cut(s)	1164, 2768
BpuMI	CCSGG	4 cut(s)	734, 1503, 1504, 1997
BsaAI	YACGTR	1 cut(s)	2519
BsaBI	GATNNNNATC	2 cut(s)	711, 2994
BsaJI	CCNNGG	8 cut(s)	766, 898, 1080, 1502, 1869, 1870, 2560, 2847
BsaWI	WCCGGW	1 cut(s)	877
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 407, 899, 1346, 1812, 1902, 2157, 2224
Bse118I	RCCGGY	2 cut(s)	54, 67
Bse1I	ACTGG	5 cut(s)	428, 1141, 2070, 2106, 2229
Bse3DI	GCAATG	1 cut(s)	1856
Bse8I	GATNNNNATC	2 cut(s)	711, 2994
BseAI	TCCGGA	1 cut(s)	877
BseBI	CCWGG	7 cut(s)	402, 483, 531, 1082, 1871, 1903, 2303
BseDI	CCNNGG	8 cut(s)	766, 898, 1080, 1502, 1869, 1870, 2560, 2847
BseGI	GGATG	5 cut(s)	226, 342, 478, 712, 2213
BseJI	GATNNNNATC	2 cut(s)	711, 2994
BseLI	CCNNNNNNNGG	8 cut(s)	143, 407, 899, 1346, 1812, 1902, 2157, 2224
BseMI	GCAATG	1 cut(s)	1856
BseMII	CTCAG	6 cut(s)	27, 460, 959, 1466, 1707, 2247
BseNI	ACTGG	5 cut(s)	428, 1141, 2070, 2106, 2229
BseRI	GAGGAG	2 cut(s)	117, 677
BseSI	GKGCMC	1 cut(s)	201
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	9 cut(s)	339, 2017, 2159, 2237, 2332, 2356, 2359, 2372, 2521
BseYI	CCCAGC	1 cut(s)	1934
BsgI	GTGCAG	3 cut(s)	1653, 1712, 2358
Bsh1236I	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	6 cut(s)	71, 2324, 2481, 2574, 2672, 2867
BshNI	GGYRCC	2 cut(s)	198, 2898
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	2 cut(s)	1502, 2960
BsiSI	CCGG	8 cut(s)	55, 68, 347, 734, 878, 1503, 1996, 2135
BslFI	GGGAC	3 cut(s)	1887, 2181, 2842
BslI	CCNNNNNNNGG	8 cut(s)	143, 407, 899, 1346, 1812, 1902, 2157, 2224
BsmAI	GTCTC	7 cut(s)	186, 266, 496, 1079, 1206, 2300, 2836
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	3 cut(s)	1887, 2181, 2842
BsmI	GAATGC	3 cut(s)	808, 832, 2401
BsnI	GGCC	6 cut(s)	71, 2324, 2481, 2574, 2672, 2867
BsoBI	CYCGRG	2 cut(s)	1502, 2960
Bsp1286I	GDGCHC	3 cut(s)	201, 360, 1080
Bsp13I	TCCGGA	1 cut(s)	877
Bsp19I	CCATGG	3 cut(s)	766, 898, 2847
BspACI	CCGC	7 cut(s)	652, 1413, 2575, 2596, 2707, 2794, 2836
BspANI	GGCC	6 cut(s)	71, 2324, 2481, 2574, 2672, 2867
BspCNI	CTCAG	6 cut(s)	26, 459, 958, 1465, 1708, 2248
BspEI	TCCGGA	1 cut(s)	877
BspFNI	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
BspHI	TCATGA	2 cut(s)	97, 997
BspLI	GGNNCC	7 cut(s)	173, 200, 345, 1077, 2325, 2815, 2900
BspMAI	CTGCAG	2 cut(s)	1550, 2350
BspMI	ACCTGC	1 cut(s)	2165
BspT107I	GGYRCC	2 cut(s)	198, 2898
BspTI	CTTAAG	2 cut(s)	254, 2330
BsrDI	GCAATG	1 cut(s)	1856
BsrFI	RCCGGY	2 cut(s)	54, 67
BsrI	ACTGG	5 cut(s)	428, 1141, 2070, 2106, 2229
BssAI	RCCGGY	2 cut(s)	54, 67
BssECI	CCNNGG	8 cut(s)	766, 898, 1080, 1502, 1869, 1870, 2560, 2847
BssNAI	GTATAC	1 cut(s)	1098
BssT1I	CCWWGG	3 cut(s)	766, 898, 2847
Bst1107I	GTATAC	1 cut(s)	1098
Bst2UI	CCWGG	7 cut(s)	402, 483, 531, 1082, 1871, 1903, 2303
Bst4CI	ACNGT	6 cut(s)	203, 232, 935, 1300, 1708, 2278
Bst6I	CTCTTC	3 cut(s)	442, 571, 1818
BstAFI	CTTAAG	2 cut(s)	254, 2330
BstAPI	GCANNNNNTGC	2 cut(s)	2144, 2369
BstBAI	YACGTR	1 cut(s)	2519
BstC8I	GCNNGC	3 cut(s)	69, 2377, 2888
BstDSI	CCRYGG	3 cut(s)	766, 898, 2847
BstEII	GGTNACC	1 cut(s)	112
BstENI	CCTNNNNNAGG	2 cut(s)	405, 1900
BstF5I	GGATG	5 cut(s)	226, 342, 478, 712, 2213
BstFNI	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
BstH2I	RGCGCY	1 cut(s)	2594
BstHHI	GCGC	7 cut(s)	327, 587, 2035, 2255, 2401, 2593, 2886
BstMAI	GTCTC	7 cut(s)	186, 266, 496, 1079, 1206, 2300, 2836
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	9 cut(s)	205, 1581, 2078, 2144, 2366, 2369, 2396, 2571, 2881
BstNI	CCWGG	7 cut(s)	402, 483, 531, 1082, 1871, 1903, 2303
BstNSI	RCATGY	2 cut(s)	2627, 2890
BstPI	GGTNACC	1 cut(s)	112
BstSFI	CTRYAG	5 cut(s)	537, 799, 1546, 2346, 2442
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
BstV1I	GCAGC	9 cut(s)	339, 2017, 2159, 2237, 2332, 2356, 2359, 2372, 2521
BstV2I	GAAGAC	3 cut(s)	2419, 2775, 2988
BstX2I	RGATCY	8 cut(s)	171, 343, 485, 553, 1385, 1589, 1865, 2116
BstYI	RGATCY	8 cut(s)	171, 343, 485, 553, 1385, 1589, 1865, 2116
BstZ17I	GTATAC	1 cut(s)	1098
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	6 cut(s)	71, 2324, 2481, 2574, 2672, 2867
BtgI	CCRYGG	3 cut(s)	766, 898, 2847
BtsCI	GGATG	5 cut(s)	226, 342, 478, 712, 2213
BtsI	GCAGTG	3 cut(s)	1555, 1792, 2100
BtsIMutI	CAGTG	6 cut(s)	940, 1555, 1704, 1792, 2100, 2222
BveI	ACCTGC	1 cut(s)	2165
Cac8I	GCNNGC	3 cut(s)	69, 2377, 2888
CaiI	CAGNNNCTG	3 cut(s)	488, 536, 2250
CciI	TCATGA	2 cut(s)	97, 997
CfoI	GCGC	7 cut(s)	327, 587, 2035, 2255, 2401, 2593, 2886
Cfr10I	RCCGGY	2 cut(s)	54, 67
Cfr13I	GGNCC	6 cut(s)	902, 1139, 2323, 2670, 2866, 2945
Cfr9I	CCCGGG	1 cut(s)	1502
CseI	GACGC	2 cut(s)	1163, 1318
Csp6I	GTAC	6 cut(s)	405, 942, 1803, 2063, 2696, 2899
CspCI	CAANNNNNGTGG	2 cut(s)	38, 73
CviQI	GTAC	6 cut(s)	405, 942, 1803, 2063, 2696, 2899
DraI	TTTAAA	1 cut(s)	678
DrdI	GACNNNNNNGTC	1 cut(s)	2828
DseDI	GACNNNNNNGTC	1 cut(s)	2828
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	3 cut(s)	442, 571, 1818
EarI	CTCTTC	3 cut(s)	442, 571, 1818
EciI	GGCGGA	1 cut(s)	2722
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	766, 898, 2847
Eco147I	AGGCCT	1 cut(s)	2481
Eco24I	GRGCYC	1 cut(s)	1080
Eco32I	GATATC	5 cut(s)	730, 847, 868, 1288, 2779
Eco47I	GGWCC	3 cut(s)	902, 1139, 2945
Eco47III	AGCGCT	1 cut(s)	2592
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	83, 1512
Eco72I	CACGTG	1 cut(s)	2519
Eco88I	CYCGRG	2 cut(s)	1502, 2960
Eco91I	GGTNACC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	2 cut(s)	405, 1900
EcoO109I	RGGNCCY	1 cut(s)	2323
EcoO65I	GGTNACC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	1048
EcoRII	CCWGG	7 cut(s)	400, 481, 529, 1080, 1869, 1901, 2301
EcoRV	GATATC	5 cut(s)	730, 847, 868, 1288, 2779
EcoT14I	CCWWGG	3 cut(s)	766, 898, 2847
EcoT38I	GRGCYC	1 cut(s)	1080
ErhI	CCWWGG	3 cut(s)	766, 898, 2847
Esp3I	CGTCTC	1 cut(s)	186
FalI	AAGNNNNNCTT	4 cut(s)	2324, 2356, 2489, 2521
FaqI	GGGAC	3 cut(s)	1887, 2181, 2842
FauI	CCCGC	1 cut(s)	2829
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	748, 922
FblI	GTMKAC	2 cut(s)	963, 1097
FokI	GGATG	5 cut(s)	233, 349, 465, 719, 2200
FriOI	GRGCYC	1 cut(s)	1080
FspBI	CTAG	9 cut(s)	557, 659, 744, 1623, 1800, 2202, 2477, 2588, 2931
GlaI	GCGC	7 cut(s)	326, 586, 2034, 2254, 2400, 2592, 2885
GsaI	CCCAGC	1 cut(s)	1938
GsuI	CTGGAG	4 cut(s)	1323, 2109, 2324, 2912
HaeII	RGCGCY	1 cut(s)	2594
HaeIII	GGCC	6 cut(s)	71, 2324, 2481, 2574, 2672, 2867
HapII	CCGG	8 cut(s)	55, 68, 347, 734, 878, 1503, 1996, 2135
HgaI	GACGC	2 cut(s)	1163, 1318
HhaI	GCGC	7 cut(s)	327, 587, 2035, 2255, 2401, 2593, 2886
Hin6I	GCGC	7 cut(s)	325, 585, 2033, 2253, 2399, 2591, 2884
HinP1I	GCGC	7 cut(s)	325, 585, 2033, 2253, 2399, 2591, 2884
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HindIII	AAGCTT	1 cut(s)	645
HpaII	CCGG	8 cut(s)	55, 68, 347, 734, 878, 1503, 1996, 2135
HphI	GGTGA	9 cut(s)	106, 248, 406, 417, 1361, 1487, 1522, 1599, 2948
HpyCH4III	ACNGT	6 cut(s)	203, 232, 935, 1300, 1708, 2278
HpyCH4IV	ACGT	5 cut(s)	267, 940, 960, 1437, 2518
HpyF10VI	GCNNNNNNNGC	9 cut(s)	205, 1581, 2078, 2144, 2366, 2369, 2396, 2571, 2881
HpySE526I	ACGT	5 cut(s)	267, 940, 960, 1437, 2518
HspAI	GCGC	7 cut(s)	325, 585, 2033, 2253, 2399, 2591, 2884
Kpn2I	TCCGGA	1 cut(s)	877
KpnI	GGTACC	1 cut(s)	2902
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Ksp22I	TGATCA	2 cut(s)	748, 922
LmnI	GCTCC	7 cut(s)	664, 1075, 1492, 1846, 2090, 2598, 2813
Lsp1109I	GCAGC	9 cut(s)	339, 2017, 2159, 2237, 2332, 2356, 2359, 2372, 2521
LweI	GCATC	7 cut(s)	807, 939, 1037, 1342, 2090, 2147, 2295
MaeI	CTAG	9 cut(s)	557, 659, 744, 1623, 1800, 2202, 2477, 2588, 2931
MaeII	ACGT	5 cut(s)	267, 940, 960, 1437, 2518
MaeIII	GTNAC	5 cut(s)	112, 956, 1510, 2095, 2437
MflI	RGATCY	8 cut(s)	171, 343, 485, 553, 1385, 1589, 1865, 2116
MhlI	GDGCHC	3 cut(s)	201, 360, 1080
MlyI	GAGTC	7 cut(s)	463, 535, 620, 1550, 1721, 1989, 2864
MmeI	TCCRAC	3 cut(s)	241, 321, 1824
MroI	TCCGGA	1 cut(s)	877
MroNI	GCCGGC	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	1827
MslI	CAYNNNNRTG	1 cut(s)	2990
MspA1I	CMGCKG	2 cut(s)	2087, 2534
MspCI	CTTAAG	2 cut(s)	254, 2330
MspI	CCGG	8 cut(s)	55, 68, 347, 734, 878, 1503, 1996, 2135
Mva1269I	GAATGC	3 cut(s)	808, 832, 2401
MvaI	CCWGG	7 cut(s)	402, 483, 531, 1082, 1871, 1903, 2303
MvnI	CGCG	5 cut(s)	1174, 1415, 1575, 2035, 2836
MwoI	GCNNNNNNNGC	9 cut(s)	205, 1581, 2078, 2144, 2366, 2369, 2396, 2571, 2881
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	4 cut(s)	734, 1503, 1504, 1997
NcoI	CCATGG	3 cut(s)	766, 898, 2847
NdeI	CATATG	1 cut(s)	352
NgoMIV	GCCGGC	1 cut(s)	67
NlaIV	GGNNCC	7 cut(s)	173, 200, 345, 1077, 2325, 2815, 2900
NmuCI	GTSAC	3 cut(s)	112, 1510, 2095
NspI	RCATGY	2 cut(s)	2627, 2890
PaeI	GCATGC	1 cut(s)	2890
PaeR7I	CTCGAG	1 cut(s)	2960
PagI	TCATGA	2 cut(s)	97, 997
PasI	CCCWGGG	1 cut(s)	1870
PceI	AGGCCT	1 cut(s)	2481
PciI	ACATGT	1 cut(s)	2623
PcsI	WCGNNNNNNNCGW	3 cut(s)	184, 2515, 2967
PctI	GAATGC	3 cut(s)	808, 832, 2401
PdiI	GCCGGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	1827
PflMI	CCANNNNNTGG	1 cut(s)	1812
PfoI	TCCNGGA	4 cut(s)	481, 732, 1901, 1995
PleI	GAGTC	7 cut(s)	462, 534, 619, 1549, 1720, 1988, 2863
PmaCI	CACGTG	1 cut(s)	2519
PmlI	CACGTG	1 cut(s)	2519
PpsI	GAGTC	7 cut(s)	462, 534, 619, 1549, 1720, 1988, 2863
Ppu21I	YACGTR	1 cut(s)	2519
PscI	ACATGT	1 cut(s)	2623
PshBI	ATTAAT	2 cut(s)	27, 989
Psp1406I	AACGTT	1 cut(s)	1437
Psp6I	CCWGG	7 cut(s)	400, 481, 529, 1080, 1869, 1901, 2301
PspCI	CACGTG	1 cut(s)	2519
PspEI	GGTNACC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	1934
PspGI	CCWGG	7 cut(s)	400, 481, 529, 1080, 1869, 1901, 2301
PspN4I	GGNNCC	7 cut(s)	173, 200, 345, 1077, 2325, 2815, 2900
PspPI	GGNCC	6 cut(s)	902, 1139, 2323, 2670, 2866, 2945
PspXI	VCTCGAGB	1 cut(s)	2960
PsrI	GAACNNNNNNTAC	2 cut(s)	1632, 1664
PstI	CTGCAG	2 cut(s)	1550, 2350
PstNI	CAGNNNCTG	3 cut(s)	488, 536, 2250
PsuI	RGATCY	8 cut(s)	171, 343, 485, 553, 1385, 1589, 1865, 2116
PvuII	CAGCTG	2 cut(s)	2087, 2534
RsaI	GTAC	6 cut(s)	406, 943, 1804, 2064, 2697, 2900
RsaNI	GTAC	6 cut(s)	405, 942, 1803, 2063, 2696, 2899
RseI	CAYNNNNRTG	1 cut(s)	2990
Sau96I	GGNCC	6 cut(s)	902, 1139, 2323, 2670, 2866, 2945
SchI	GAGTC	7 cut(s)	463, 535, 620, 1550, 1721, 1989, 2864
SduI	GDGCHC	3 cut(s)	201, 360, 1080
SfaNI	GCATC	7 cut(s)	807, 939, 1037, 1342, 2090, 2147, 2295
SfcI	CTRYAG	5 cut(s)	537, 799, 1546, 2346, 2442
Sfr274I	CTCGAG	1 cut(s)	2960
SinI	GGWCC	3 cut(s)	902, 1139, 2945
SlaI	CTCGAG	1 cut(s)	2960
SmaI	CCCGGG	1 cut(s)	1504
SmiMI	CAYNNNNRTG	1 cut(s)	2990
SmlI	CTYRAG	5 cut(s)	254, 1179, 2330, 2783, 2960
SmoI	CTYRAG	5 cut(s)	254, 1179, 2330, 2783, 2960
SpeI	ACTAGT	1 cut(s)	2930
SphI	GCATGC	1 cut(s)	2890
SseBI	AGGCCT	1 cut(s)	2481
SsiI	CCGC	7 cut(s)	652, 1413, 2575, 2596, 2707, 2794, 2836
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	9 cut(s)	557, 659, 744, 1623, 1800, 2202, 2477, 2588, 2931
StuI	AGGCCT	1 cut(s)	2481
StyI	CCWWGG	3 cut(s)	766, 898, 2847
TaaI	ACNGT	6 cut(s)	203, 232, 935, 1300, 1708, 2278
TaiI	ACGT	5 cut(s)	270, 943, 963, 1440, 2521
TaqI	TCGA	5 cut(s)	464, 2262, 2808, 2853, 2961
TatI	WGTACW	2 cut(s)	2062, 2695
TauI	GCSGC	2 cut(s)	655, 2577
TscAI	CASTG	6 cut(s)	940, 1555, 1711, 1792, 2100, 2229
TseFI	GTSAC	3 cut(s)	112, 1510, 2095
TseI	GCWGC	9 cut(s)	327, 2030, 2147, 2250, 2345, 2360, 2369, 2372, 2534
Tsp45I	GTSAC	3 cut(s)	112, 1510, 2095
TspGWI	ACGGA	2 cut(s)	176, 1466
TspMI	CCCGGG	1 cut(s)	1502
TspRI	CASTG	6 cut(s)	940, 1555, 1711, 1792, 2100, 2229
Van91I	CCANNNNNTGG	1 cut(s)	1812
Vha464I	CTTAAG	2 cut(s)	254, 2330
VpaK11BI	GGWCC	3 cut(s)	902, 1139, 2945
VspI	ATTAAT	2 cut(s)	27, 989
XagI	CCTNNNNNAGG	2 cut(s)	405, 1900
XapI	RAATTY	9 cut(s)	313, 698, 1001, 1048, 1316, 1332, 1562, 1668, 1990
XceI	RCATGY	2 cut(s)	2627, 2890
XhoI	CTCGAG	1 cut(s)	2960
XmaI	CCCGGG	1 cut(s)	1502
XmiI	GTMKAC	2 cut(s)	963, 1097
XmnI	GAANNNNTTC	1 cut(s)	1827
XspI	CTAG	9 cut(s)	557, 659, 744, 1623, 1800, 2202, 2477, 2588, 2931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.