Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000150.1

Orthogroup ID

OG0010895

Physical Location & Seq

Genomic Coordinates Reverse (-)

191802 .. 198897

Gene Structure 7096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000150.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3390 bp

atgtcaaaaatacccttttggatattttaccgacgttttcaccgtattgattacactgaccaggctgctgcacatcgccttcctccggccaattgtgttatgccacgtcgtcggatgacacgaagaagaacactgcttcgtcttggtcgcgctgtcactgtcggttttgtcaagcccaaattcaaacccggcaccgttcactgtaacgacgtttccggcgtgatcccggttcgccgaggttgtctgggttctccggctcgggctcgactggcatataatattaatgacctctttcaagaggctcaaggccggtggctgaagccggccgaagtgctattcatattgcagaatcatgagaagtataaggtcaccccagagcctcctcaacaacctgttagatataatattaatgacctctttcaagaggctcaaggccggtggctgaagccggccgaagtgctattcatattgcagaatcatgagaagtataaggtcaccccagagcctcctcaacaacctgttagtgggtctttgtttctttttaacaaaaggatccttcggtttttccgtagagacgggcaccgttggcgtaaaaagaaggatgggagaactgttggtgaagcacatgaacggcttaaggttggaaacgttgagacgttgaattgttattatgcgcatggggaggacaatccgaattttcagaggcgcagctattggatgttggatccggcatatgagcacattgttcttgttcattatagggaaattagtgaggtgaagcccggtacaggatcaaacatacaatcaccagtttcctcttctaccctcagccagagtccaatctcgaatactacacaacatccaggatctgtctccatgattagtgagttgtatgaaccttatacgagtccaggttctgtagaagttagttcagatctagtcatcaagaaaaatggaagagagagcgcagagaacttatatagaacaggggagtcagatagttcatctaaggctgatgttagtcaagctttgcggcgactagaggagcagttaagtttaaatgatgatagcttcaacgaatttgtggatgataatccagatggttcagataccccggaataccctagtgatcagtttactgccttccatggacaagaacatattgttcacgatcagttctatagtgggcattctctgatgcaagggaatgcagacaatagttcagatatcttggattaccataatgatatcgtcaatcaggatcagtttactcccttccatggaccagaacacattgtaaatgatcagttttacagtggacgtgctcagatgcaaagtaatgtagaccttagtggtaaacatcatcaattaattggtcatgaatttgcagatggaaacaaagaatcagcatcttggaaggaggttctgaattcatcgaagacttcatcagttgtggagccccaggagacaggcttgtataccttggacagaagtgaaaaactatcttcatcattgactggtccaaatggggcgtttgaatatccttctttgtcgcgtcctcaagaagttgacattttcatgtctccattttcatctgcaatagaaacacattcggactactttacatcattttttgagcaaggacaaatgggaaatcttgaatcagatatcagtttgactgttgcacagacgcaaaaatttacaattcgggaaatttctccagaatggggtgatgccaacgaacccacaaaggtcattgttattggatcttttctgtgcgatccatcagaatccgcatggacttgtatgtttggcaacgttgaagttcctgctcagatcattcaggaaggcgtaatctgttgtgaagctccccctcaccttcccgggaaggtgacactctgcattacttcaggcaatcgggagtcctgcagtgaagttagggaatttgagtatcgcgttaagagcagtagatctactccaaataattcacctccaaaagaatctagtaggagtgcagaagaacttttattacttgtcagattcgctcaaattcttttgtctgattcatcagtgcagaaaagcgacactgttgagtctgagtttgtgagaaaatcgaaagctgacgatgatacttggggtagtattattgaggctctcttagtaggcagtggaagttcatctagtaccatatattggcttctggaagagtttctaaaagacaagttggagcaatggctttcttccagatcccagggacttgaccagacagattgttccttatccaggaaagagcaaggcatgatacacatggtagctgggttgggctttgagtgggcaattaacccaatactcaatcttggagtcaatataaatttccgggatataaacgggtggactgctctacattgggctgcgcgttttggaagggaaaagatggttgctgtactggttgcttctggtgcatcagctggagcagtgacagaccccagttcccaagatcccataggcaaaactccggcatctattgcagccattcatgggcataagggacttgcaggttatctttcagaggtggcactcactagccatctgtcatcccttacactggaagaaagtgagatttccagaagctgcgctgagatcgaagcagaaataacagtaaatagcatctcaaagagtagcctggagacttatgaagatcaggccccccttaagaacaccttagctgcagtccgaaatgcagcacaggctgctgcacgcatacaatctgcttttcgggcgcattctttcagaagacgacaacagaaagaaggtggtgttacattagatgattatggtatcagttcagatgacatactaggcctttcagctatgtcaaagctaaactttcgtaatccacgtgattacaattcagctgcattatctatccagaagaaataccgaggctggaaaggccgcaaggatttcctggcgctccgcaagaaagttgtcaagatacaggcacatgtgaggggttatcaagttaggaagcactacaaggtaatctgttgggccgttgggattctggacaaagttgtactaaggtggcggagaaaaggagttggtctgcgtggttttcggcatgaggcagaatccacagaatcaagtgaagacgaagatatcctcaaggttttccgcaaacagaaagtggatggagccattgacgaggctgtctcgcgggtgttgtccatggttgagtccccagaggcccgtgagcaatatcagcgcatgctggagaggtaccatcaagctaaggctgaattgggtagcactagtggtgaagcaggagcaccaatttccctcgaggatttcgttaagatggaagacattgatatgtatcagcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 CG-1 IQ TIG

Protein Analysis

1129

Amino Acids

126.83

Weight (kDa)

6.25

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67310
fragaria_vesca	FvH4_4g23551 FvH4_4g23551
malus_domestica	MD13G1121200.v1.1 MD16G1121200.v1.1
prunus_persica	Prupe.1G224000_v2.0.a1 Prupe.1G224000_v2.0.a1 Prupe.1G224000_v2.0.a1
pyrus_communis	pycom13g10550 pycom16g10390
rosa_chinensis	RchiOBHm_Chr4g0429961
rosa_laevigata	RLG00000007017
rosa_multiflora	Rmu_ssc0000150.1_g000038
rosa_roxburghii	Rroxscaffold_5G00371790
rosa_rugosa	Rorug04G0239700
rosa_samantha	Rh4AG296100 Rh4BG302600 Rh4CG318100 Rh4DG299900
rosa_wichuraiana	Rw4G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3209
AbsI	CCTCGAGG	1 cut(s)	3341
Acc16I	TGCGCA	1 cut(s)	675
Acc36I	ACCTGC	1 cut(s)	2546
Acc65I	GGTACC	1 cut(s)	3279
AccB1I	GGYRCC	3 cut(s)	191, 579, 3279
AccB7I	CCANNNNNTGG	1 cut(s)	2193
AccI	GTMKAC	2 cut(s)	1344, 1478
AccII	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
AciI	CCGC	7 cut(s)	1033, 1794, 2956, 2977, 3088, 3175, 3217
AclI	AACGTT	2 cut(s)	648, 1818
AcoI	YGGCCR	3 cut(s)	87, 324, 450
AcuI	CTGAAG	3 cut(s)	338, 464, 1893
AcvI	CACGTG	1 cut(s)	2900
AfaI	GTAC	5 cut(s)	787, 2185, 2445, 3078, 3281
AfiI	CCNNNNNNNGG	9 cut(s)	85, 524, 788, 1280, 1727, 2193, 2283, 2538, 2605
AflII	CTTAAG	2 cut(s)	635, 2711
AflIII	ACRYGT	1 cut(s)	3004
AgsI	TTSAA	9 cut(s)	184, 296, 422, 661, 1075, 1538, 1661, 1823, 3386
AhlI	ACTAGT	1 cut(s)	3311
AjiI	CACGTC	2 cut(s)	107, 1322
AjnI	CCWGG	8 cut(s)	60, 862, 910, 1461, 2250, 2282, 2682, 2967
Alw21I	GWGCWC	3 cut(s)	741, 1327, 3331
Alw26I	GTCTC	7 cut(s)	567, 647, 877, 1460, 1587, 2681, 3217
AlwNI	CAGNNNCTG	3 cut(s)	869, 917, 2631
Ama87I	CYCGRG	3 cut(s)	258, 1883, 3341
AseI	ATTAAT	3 cut(s)	282, 408, 1370
Asp700I	GAANNNNTTC	1 cut(s)	2208
Asp718I	GGTACC	1 cut(s)	3279
AspLEI	GCGC	9 cut(s)	152, 676, 708, 968, 2416, 2636, 2782, 2974, 3267
AspS9I	GGNCC	5 cut(s)	1283, 1520, 2704, 3051, 3247
AsuC2I	CCSGG	7 cut(s)	189, 227, 783, 1115, 1884, 1885, 2378
AvaI	CYCGRG	3 cut(s)	258, 1883, 3341
AvaII	GGWCC	2 cut(s)	1283, 1520
BaeGI	GKGCMC	1 cut(s)	582
BamHI	GGATCC	2 cut(s)	552, 724
BanI	GGYRCC	3 cut(s)	191, 579, 3279
BanII	GRGCYC	2 cut(s)	265, 1461
BbrPI	CACGTG	1 cut(s)	2900
BbsI	GAAGAC	4 cut(s)	1445, 2800, 3156, 3369
Bbv12I	GWGCWC	3 cut(s)	741, 1327, 3331
BbvCI	CCTCAGC	1 cut(s)	827
BccI	CCATC	9 cut(s)	596, 1094, 1385, 1792, 2428, 2595, 3185, 3291, 3352
BceAI	ACGGC	2 cut(s)	647, 3038
BciT130I	CCWGG	8 cut(s)	62, 864, 912, 1463, 2252, 2284, 2684, 2969
BclI	TGATCA	2 cut(s)	1129, 1303
BcnI	CCSGG	7 cut(s)	189, 227, 783, 1115, 1884, 1885, 2378
BcoDI	GTCTC	7 cut(s)	567, 647, 877, 1460, 1587, 2681, 3217
BcuI	ACTAGT	1 cut(s)	3311
BfaI	CTAG	8 cut(s)	938, 1040, 1125, 2004, 2181, 2583, 2858, 3312
BfmI	CTRYAG	4 cut(s)	918, 1180, 1927, 2727
BfoI	RGCGCY	1 cut(s)	2975
BfrI	CTTAAG	2 cut(s)	635, 2711
BfuAI	ACCTGC	1 cut(s)	2546
BglII	AGATCT	2 cut(s)	934, 1970
Bme18I	GGWCC	2 cut(s)	1283, 1520
BmeT110I	CYCGRG	3 cut(s)	258, 1883, 3341
BmgBI	CACGTC	2 cut(s)	107, 1322
BmgT120I	GGNCC	5 cut(s)	1283, 1520, 2704, 3051, 3247
BmiI	GGNNCC	8 cut(s)	193, 554, 581, 726, 1458, 2706, 3196, 3281
BmrI	ACTGGG	1 cut(s)	2481
BmsI	GCATC	7 cut(s)	1188, 1320, 1418, 1723, 2471, 2528, 2676
BmuI	ACTGGG	1 cut(s)	2481
BpiI	GAAGAC	4 cut(s)	1445, 2800, 3156, 3369
BplI	GAGNNNNNCTC	2 cut(s)	3197, 3229
BpmI	CTGGAG	4 cut(s)	1704, 2490, 2705, 3293
Bpu10I	CCTNAGC	3 cut(s)	827, 2722, 3291
BpuEI	CTTGAG	4 cut(s)	288, 414, 1545, 3149
BpuMI	CCSGG	7 cut(s)	189, 227, 783, 1115, 1884, 1885, 2378
BsaAI	YACGTR	1 cut(s)	2900
BsaBI	GATNNNNATC	2 cut(s)	1092, 3375
Bsc4I	CCNNNNNNNGG	9 cut(s)	85, 524, 788, 1280, 1727, 2193, 2283, 2538, 2605
Bse118I	RCCGGY	4 cut(s)	309, 322, 435, 448
Bse1I	ACTGG	6 cut(s)	273, 809, 1522, 2451, 2487, 2610
Bse3DI	GCAATG	1 cut(s)	2237
Bse8I	GATNNNNATC	2 cut(s)	1092, 3375
BseBI	CCWGG	8 cut(s)	62, 864, 912, 1463, 2252, 2284, 2684, 2969
BseGI	GGATG	7 cut(s)	120, 607, 723, 859, 1093, 2594, 3196
BseJI	GATNNNNATC	2 cut(s)	1092, 3375
BseLI	CCNNNNNNNGG	9 cut(s)	85, 524, 788, 1280, 1727, 2193, 2283, 2538, 2605
BseMI	GCAATG	1 cut(s)	2237
BseMII	CTCAG	5 cut(s)	841, 1340, 1847, 2088, 2628
BseNI	ACTGG	6 cut(s)	273, 809, 1522, 2451, 2487, 2610
BseRI	GAGGAG	3 cut(s)	372, 498, 1058
BseSI	GKGCMC	1 cut(s)	582
BseX3I	CGGCCG	2 cut(s)	324, 450
BseYI	CCCAGC	1 cut(s)	2315
BsgI	GTGCAG	4 cut(s)	54, 2034, 2093, 2739
Bsh1236I	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
Bsh1285I	CGRYCG	2 cut(s)	327, 453
BshNI	GGYRCC	3 cut(s)	191, 579, 3279
BsiEI	CGRYCG	2 cut(s)	327, 453
BsiHKAI	GWGCWC	3 cut(s)	741, 1327, 3331
BsiHKCI	CYCGRG	3 cut(s)	258, 1883, 3341
BslFI	GGGAC	3 cut(s)	2268, 2562, 3223
BslI	CCNNNNNNNGG	9 cut(s)	85, 524, 788, 1280, 1727, 2193, 2283, 2538, 2605
BsmAI	GTCTC	7 cut(s)	567, 647, 877, 1460, 1587, 2681, 3217
BsmBI	CGTCTC	2 cut(s)	567, 647
BsmFI	GGGAC	3 cut(s)	2268, 2562, 3223
BsmI	GAATGC	3 cut(s)	1189, 1213, 2782
BsoBI	CYCGRG	3 cut(s)	258, 1883, 3341
Bsp1286I	GDGCHC	6 cut(s)	265, 582, 741, 1327, 1461, 3331
Bsp19I	CCATGG	3 cut(s)	1147, 1279, 3228
BspACI	CCGC	7 cut(s)	1033, 1794, 2956, 2977, 3088, 3175, 3217
BspCNI	CTCAG	5 cut(s)	840, 1339, 1846, 2089, 2629
BspFNI	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
BspHI	TCATGA	3 cut(s)	352, 478, 1378
BspLI	GGNNCC	8 cut(s)	193, 554, 581, 726, 1458, 2706, 3196, 3281
BspMAI	CTGCAG	2 cut(s)	1931, 2731
BspMI	ACCTGC	1 cut(s)	2546
BspT107I	GGYRCC	3 cut(s)	191, 579, 3279
BspTI	CTTAAG	2 cut(s)	635, 2711
BsrDI	GCAATG	1 cut(s)	2237
BsrFI	RCCGGY	4 cut(s)	309, 322, 435, 448
BsrI	ACTGG	6 cut(s)	273, 809, 1522, 2451, 2487, 2610
BssAI	RCCGGY	4 cut(s)	309, 322, 435, 448
BssNAI	GTATAC	1 cut(s)	1479
BssT1I	CCWWGG	4 cut(s)	1147, 1279, 1482, 3228
Bst1107I	GTATAC	1 cut(s)	1479
Bst2UI	CCWGG	8 cut(s)	62, 864, 912, 1463, 2252, 2284, 2684, 2969
Bst6I	CTCTTC	3 cut(s)	823, 952, 2199
BstAFI	CTTAAG	2 cut(s)	635, 2711
BstAPI	GCANNNNNTGC	2 cut(s)	2525, 2750
BstBAI	YACGTR	1 cut(s)	2900
BstC8I	GCNNGC	4 cut(s)	324, 450, 2758, 3269
BstDSI	CCRYGG	3 cut(s)	1147, 1279, 3228
BstEII	GGTNACC	2 cut(s)	367, 493
BstENI	CCTNNNNNAGG	1 cut(s)	2281
BstF5I	GGATG	7 cut(s)	120, 607, 723, 859, 1093, 2594, 3196
BstFNI	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
BstH2I	RGCGCY	1 cut(s)	2975
BstHHI	GCGC	9 cut(s)	152, 676, 708, 968, 2416, 2636, 2782, 2974, 3267
BstMAI	GTCTC	7 cut(s)	567, 647, 877, 1460, 1587, 2681, 3217
BstMCI	CGRYCG	2 cut(s)	327, 453
BstNI	CCWGG	8 cut(s)	62, 864, 912, 1463, 2252, 2284, 2684, 2969
BstNSI	RCATGY	2 cut(s)	3008, 3271
BstPI	GGTNACC	2 cut(s)	367, 493
BstSFI	CTRYAG	4 cut(s)	918, 1180, 1927, 2727
BstSLI	GKGCMC	1 cut(s)	582
BstUI	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
BstV2I	GAAGAC	4 cut(s)	1445, 2800, 3156, 3369
BstX2I	RGATCY	8 cut(s)	552, 724, 866, 934, 1766, 1970, 2246, 2497
BstYI	RGATCY	8 cut(s)	552, 724, 866, 934, 1766, 1970, 2246, 2497
BstZ17I	GTATAC	1 cut(s)	1479
BstZI	CGGCCG	2 cut(s)	324, 450
BtgI	CCRYGG	3 cut(s)	1147, 1279, 3228
BtgZI	GCGATG	1 cut(s)	59
BtrI	CACGTC	2 cut(s)	107, 1322
BtsCI	GGATG	7 cut(s)	120, 607, 723, 859, 1093, 2594, 3196
BtsI	GCAGTG	4 cut(s)	131, 1936, 2173, 2481
BveI	ACCTGC	1 cut(s)	2546
Cac8I	GCNNGC	4 cut(s)	324, 450, 2758, 3269
CaiI	CAGNNNCTG	3 cut(s)	869, 917, 2631
CciI	TCATGA	3 cut(s)	352, 478, 1378
CfoI	GCGC	9 cut(s)	152, 676, 708, 968, 2416, 2636, 2782, 2974, 3267
Cfr10I	RCCGGY	4 cut(s)	309, 322, 435, 448
Cfr13I	GGNCC	5 cut(s)	1283, 1520, 2704, 3051, 3247
Cfr9I	CCCGGG	1 cut(s)	1883
CseI	GACGC	2 cut(s)	1544, 1699
Csp6I	GTAC	5 cut(s)	786, 2184, 2444, 3077, 3280
CspCI	CAANNNNNGTGG	4 cut(s)	293, 328, 419, 454
CviQI	GTAC	5 cut(s)	786, 2184, 2444, 3077, 3280
DraI	TTTAAA	1 cut(s)	1059
DrdI	GACNNNNNNGTC	1 cut(s)	3209
DseDI	GACNNNNNNGTC	1 cut(s)	3209
EaeI	YGGCCR	3 cut(s)	87, 324, 450
EagI	CGGCCG	2 cut(s)	324, 450
Eam1104I	CTCTTC	3 cut(s)	823, 952, 2199
EarI	CTCTTC	3 cut(s)	823, 952, 2199
EciI	GGCGGA	1 cut(s)	3103
EclXI	CGGCCG	2 cut(s)	324, 450
Eco130I	CCWWGG	4 cut(s)	1147, 1279, 1482, 3228
Eco147I	AGGCCT	1 cut(s)	2862
Eco24I	GRGCYC	2 cut(s)	265, 1461
Eco32I	GATATC	4 cut(s)	1228, 1249, 1669, 3160
Eco47I	GGWCC	2 cut(s)	1283, 1520
Eco52I	CGGCCG	2 cut(s)	324, 450
Eco57I	CTGAAG	3 cut(s)	338, 464, 1893
Eco72I	CACGTG	1 cut(s)	2900
Eco88I	CYCGRG	3 cut(s)	258, 1883, 3341
Eco91I	GGTNACC	2 cut(s)	367, 493
EcoNI	CCTNNNNNAGG	1 cut(s)	2281
EcoO109I	RGGNCCY	1 cut(s)	2704
EcoO65I	GGTNACC	2 cut(s)	367, 493
EcoRI	GAATTC	1 cut(s)	1429
EcoRII	CCWGG	8 cut(s)	60, 862, 910, 1461, 2250, 2282, 2682, 2967
EcoRV	GATATC	4 cut(s)	1228, 1249, 1669, 3160
EcoT14I	CCWWGG	4 cut(s)	1147, 1279, 1482, 3228
EcoT38I	GRGCYC	2 cut(s)	265, 1461
ErhI	CCWWGG	4 cut(s)	1147, 1279, 1482, 3228
Esp3I	CGTCTC	2 cut(s)	567, 647
FalI	AAGNNNNNCTT	4 cut(s)	2705, 2737, 2870, 2902
FaqI	GGGAC	3 cut(s)	2268, 2562, 3223
FauI	CCCGC	1 cut(s)	3210
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	1129, 1303
FblI	GTMKAC	2 cut(s)	1344, 1478
FokI	GGATG	7 cut(s)	127, 614, 730, 846, 1100, 2581, 3203
FriOI	GRGCYC	2 cut(s)	265, 1461
FspAI	RTGCGCAY	1 cut(s)	675
FspBI	CTAG	8 cut(s)	938, 1040, 1125, 2004, 2181, 2583, 2858, 3312
FspI	TGCGCA	1 cut(s)	675
GlaI	GCGC	9 cut(s)	151, 675, 707, 967, 2415, 2635, 2781, 2973, 3266
GsaI	CCCAGC	1 cut(s)	2319
GsuI	CTGGAG	4 cut(s)	1704, 2490, 2705, 3293
HaeII	RGCGCY	1 cut(s)	2975
HgaI	GACGC	2 cut(s)	1544, 1699
HhaI	GCGC	9 cut(s)	152, 676, 708, 968, 2416, 2636, 2782, 2974, 3267
Hin6I	GCGC	9 cut(s)	150, 674, 706, 966, 2414, 2634, 2780, 2972, 3265
HinP1I	GCGC	9 cut(s)	150, 674, 706, 966, 2414, 2634, 2780, 2972, 3265
HincII	GTYRAC	1 cut(s)	1570
HindII	GTYRAC	1 cut(s)	1570
HindIII	AAGCTT	1 cut(s)	1026
Hpy99I	CGWCG	4 cut(s)	36, 111, 114, 212
HpyCH4IV	ACGT	8 cut(s)	34, 106, 210, 648, 656, 1321, 1818, 2899
HpySE526I	ACGT	8 cut(s)	34, 106, 210, 648, 656, 1321, 1818, 2899
HspAI	GCGC	9 cut(s)	150, 674, 706, 966, 2414, 2634, 2780, 2972, 3265
KpnI	GGTACC	1 cut(s)	3283
KroI	GCCGGC	2 cut(s)	322, 448
KroNI	GCCGGC	2 cut(s)	324, 450
Ksp22I	TGATCA	2 cut(s)	1129, 1303
LmnI	GCTCC	8 cut(s)	1045, 1456, 1873, 2227, 2471, 2979, 3194, 3326
LweI	GCATC	7 cut(s)	1188, 1320, 1418, 1723, 2471, 2528, 2676
MaeI	CTAG	8 cut(s)	938, 1040, 1125, 2004, 2181, 2583, 2858, 3312
MaeII	ACGT	8 cut(s)	34, 106, 210, 648, 656, 1321, 1818, 2899
MaeIII	GTNAC	7 cut(s)	154, 203, 367, 493, 1891, 2476, 2818
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	8 cut(s)	552, 724, 866, 934, 1766, 1970, 2246, 2497
MhlI	GDGCHC	6 cut(s)	265, 582, 741, 1327, 1461, 3331
MlyI	GAGTC	7 cut(s)	844, 916, 1001, 1931, 2102, 2370, 3245
MmeI	TCCRAC	4 cut(s)	92, 622, 702, 2205
MroNI	GCCGGC	2 cut(s)	322, 448
MroXI	GAANNNNTTC	1 cut(s)	2208
MslI	CAYNNNNRTG	2 cut(s)	1577, 3371
MspA1I	CMGCKG	2 cut(s)	2468, 2915
MspCI	CTTAAG	2 cut(s)	635, 2711
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	3 cut(s)	1189, 1213, 2782
MvaI	CCWGG	8 cut(s)	62, 864, 912, 1463, 2252, 2284, 2684, 2969
MvnI	CGCG	5 cut(s)	150, 1555, 1956, 2416, 3217
NaeI	GCCGGC	2 cut(s)	324, 450
NciI	CCSGG	7 cut(s)	189, 227, 783, 1115, 1884, 1885, 2378
NcoI	CCATGG	3 cut(s)	1147, 1279, 3228
NdeI	CATATG	1 cut(s)	733
NgoMIV	GCCGGC	2 cut(s)	322, 448
NlaIV	GGNNCC	8 cut(s)	193, 554, 581, 726, 1458, 2706, 3196, 3281
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	5 cut(s)	154, 367, 493, 1891, 2476
NsbI	TGCGCA	1 cut(s)	675
NspI	RCATGY	2 cut(s)	3008, 3271
PaeI	GCATGC	1 cut(s)	3271
PaeR7I	CTCGAG	1 cut(s)	3341
PagI	TCATGA	3 cut(s)	352, 478, 1378
PasI	CCCWGGG	1 cut(s)	2251
PceI	AGGCCT	1 cut(s)	2862
PciI	ACATGT	1 cut(s)	3004
PcsI	WCGNNNNNNNCGW	6 cut(s)	40, 118, 216, 565, 2896, 3348
PctI	GAATGC	3 cut(s)	1189, 1213, 2782
PdiI	GCCGGC	2 cut(s)	324, 450
PdmI	GAANNNNTTC	1 cut(s)	2208
PflMI	CCANNNNNTGG	1 cut(s)	2193
PfoI	TCCNGGA	3 cut(s)	862, 2282, 2376
PleI	GAGTC	7 cut(s)	843, 915, 1000, 1930, 2101, 2369, 3244
PmaCI	CACGTG	1 cut(s)	2900
PmlI	CACGTG	1 cut(s)	2900
PpsI	GAGTC	7 cut(s)	843, 915, 1000, 1930, 2101, 2369, 3244
Ppu21I	YACGTR	1 cut(s)	2900
PscI	ACATGT	1 cut(s)	3004
PshBI	ATTAAT	3 cut(s)	282, 408, 1370
Psp1406I	AACGTT	2 cut(s)	648, 1818
Psp6I	CCWGG	8 cut(s)	60, 862, 910, 1461, 2250, 2282, 2682, 2967
PspCI	CACGTG	1 cut(s)	2900
PspEI	GGTNACC	2 cut(s)	367, 493
PspFI	CCCAGC	1 cut(s)	2315
PspGI	CCWGG	8 cut(s)	60, 862, 910, 1461, 2250, 2282, 2682, 2967
PspN4I	GGNNCC	8 cut(s)	193, 554, 581, 726, 1458, 2706, 3196, 3281
PspPI	GGNCC	5 cut(s)	1283, 1520, 2704, 3051, 3247
PspXI	VCTCGAGB	1 cut(s)	3341
PsrI	GAACNNNNNNTAC	2 cut(s)	2013, 2045
PstI	CTGCAG	2 cut(s)	1931, 2731
PstNI	CAGNNNCTG	3 cut(s)	869, 917, 2631
PsuI	RGATCY	8 cut(s)	552, 724, 866, 934, 1766, 1970, 2246, 2497
PvuII	CAGCTG	2 cut(s)	2468, 2915
RsaI	GTAC	5 cut(s)	787, 2185, 2445, 3078, 3281
RsaNI	GTAC	5 cut(s)	786, 2184, 2444, 3077, 3280
RseI	CAYNNNNRTG	2 cut(s)	1577, 3371
Sau96I	GGNCC	5 cut(s)	1283, 1520, 2704, 3051, 3247
SchI	GAGTC	7 cut(s)	844, 916, 1001, 1931, 2102, 2370, 3245
SduI	GDGCHC	6 cut(s)	265, 582, 741, 1327, 1461, 3331
SfaNI	GCATC	7 cut(s)	1188, 1320, 1418, 1723, 2471, 2528, 2676
SfcI	CTRYAG	4 cut(s)	918, 1180, 1927, 2727
Sfr274I	CTCGAG	1 cut(s)	3341
SinI	GGWCC	2 cut(s)	1283, 1520
SlaI	CTCGAG	1 cut(s)	3341
SmaI	CCCGGG	1 cut(s)	1885
SmiMI	CAYNNNNRTG	2 cut(s)	1577, 3371
SmlI	CTYRAG	7 cut(s)	303, 429, 635, 1560, 2711, 3164, 3341
SmoI	CTYRAG	7 cut(s)	303, 429, 635, 1560, 2711, 3164, 3341
SpeI	ACTAGT	1 cut(s)	3311
SphI	GCATGC	1 cut(s)	3271
SseBI	AGGCCT	1 cut(s)	2862
SsiI	CCGC	7 cut(s)	1033, 1794, 2956, 2977, 3088, 3175, 3217
SspI	AATATT	2 cut(s)	280, 406
SspMI	CTAG	8 cut(s)	938, 1040, 1125, 2004, 2181, 2583, 2858, 3312
StuI	AGGCCT	1 cut(s)	2862
StyI	CCWWGG	4 cut(s)	1147, 1279, 1482, 3228
TaiI	ACGT	8 cut(s)	37, 109, 213, 651, 659, 1324, 1821, 2902
TaqI	TCGA	6 cut(s)	265, 845, 1436, 2114, 2643, 3342
TatI	WGTACW	2 cut(s)	2443, 3076
TauI	GCSGC	2 cut(s)	1036, 2958
TseFI	GTSAC	5 cut(s)	154, 367, 493, 1891, 2476
Tsp45I	GTSAC	5 cut(s)	154, 367, 493, 1891, 2476
TspGWI	ACGGA	1 cut(s)	557
TspMI	CCCGGG	1 cut(s)	1883
Van91I	CCANNNNNTGG	1 cut(s)	2193
Vha464I	CTTAAG	2 cut(s)	635, 2711
VpaK11BI	GGWCC	2 cut(s)	1283, 1520
VspI	ATTAAT	3 cut(s)	282, 408, 1370
XagI	CCTNNNNNAGG	1 cut(s)	2281
XceI	RCATGY	2 cut(s)	3008, 3271
XhoI	CTCGAG	1 cut(s)	3341
XmaI	CCCGGG	1 cut(s)	1883
XmiI	GTMKAC	2 cut(s)	1344, 1478
XmnI	GAANNNNTTC	1 cut(s)	2208
XspI	CTAG	8 cut(s)	938, 1040, 1125, 2004, 2181, 2583, 2858, 3312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.