Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Forward (+)

7282409 .. 7288016

Gene Structure 5608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGGCCTCCAGCGCCGTTAACGTCAAGCAAGAACCCTCCGAGAAACCCTACCAAATCCCCAACCTTCTGCCAATCCCATTAAGCAGCGATAGTAGCAGTAGCAGTAGCGCCAGTTCCGTCAATTCTTCCGACATCGAAGACCTTCAGACCAATTCCTTGTTCGATTCCGTGACGAGCAAGTTGAACGGCGACGATCGCGATTTGGCGGATGGAGGGGATGATGCTCCGGCGGCGAAGAAGGCGAAACGCGACGGTGAAAGGGGGTTCGTGTTGCCGGTAGGGTTTCTGCGTCCTCTCCCGCCGTTGGAATTGTCCAAGGAGTTGCCTCTGGCTCTGGTTTTGCCCGCCTCGACAATGTGCTTGCCGAGTGGGTCCGGTTGTAATAACCAGGTGGGCCCGGTTATAAGGGGATGCAAGCAGTTTTGGAAAGCAGGGGATTATGAGGGTGACAGTGGAGGCATTGCCATTTCTGGGTTTTCGTCTGCTGGCATGGACCATGTTAGGGTTCATCCCAAGTTTCTCCATTCAAATGCAACCAGCCATAAGTGGGCTCTGGGAGCTTTTGCGGAGCTCCTAGACAATGCTTTAGATGAGGTCTGCAATGGGGCCAACCATGTTTGTGTTGACATGGTGAGAAACAAAAAAGATGGTAATGAGATGTTGATGGTTGAAGATGACGGTGGTGGGATGACGCCTGAAAAAATGCGACAATGCATGTCTCTTGGGTATTCTGCAAAAAGCAAATTGGCAAATACTATTGGTCAATATGGCAATGGGTTTAAGACTAGTACTATGAGGCTTGGAGCAGACGTAATAGTGTTTTCTCGTTGTGAGGGGGAGGATGGGAGAAGACCGACACAGACCATTGGAGTGCTATCCTACACCTTTTTGAGGGGTACTGGAAAGGAAGATATTGTGGTTCCCATGGTTGATTATGAGAAAAGAGGCCAAGATTGGAACAAGATGATGCGGGGTTCTCCAGATGACTGGCATAAGAACTTAGCAACCATAGTGCAGTGGTCTCCTTATTTAAGCGAAGAAGATCTTCTTCAGCAGTTTAATCTCTTTAAAGAGCATGGTACACGTATAATAATATACAACCTTTGGGAGGATGATGAAGGAAAACTGGAACTTGATTTCGACACTGATCCCCATGATATTCAAATTAGAGGAGTCAATAGGGATGAGAAGAACATTCAGATGGCAAAACGGTATCCCAACTGTAGACACTTCTTAACCTATCGGCATTCATTAAGGAGTTATGCATCAATTCTTTATCTCAGGCTTCCATACAACTTCAGAATTATTCTTCGTGGGAAAGATGTTGAACATCATAATATAGTTAATGATATGATGTTAACGAAGGAGGTAACATACAGACCTCTGCAACTTCCGGAAGGACTGTCGCCAAAAGTTGCAAATATGACTGCAAATGTGACACTTGGTTTTGTAAAGGATGCAAAATATCATATTGATGTCCAAGGGTTCAGCGTTTATCATAAAAATCGACTGATTAAGCCGTTTTGGAGGCTGTGGAATCCTGCCGCAAGTCATGGTCGTGGCATTATAGGTGTTTTGGAAGCTGATTTTGTTGAACCAACTCACGACAAACAGGGCTTTGAGCGGACAGCTGTGCTTTCAAGACTAGAGAATAAATTGGTTAAAATTCAGAAGGATTACTGGTATGCAAATTGCCAGACTGTTGGGTATGCTCCAGTAAGACGTACTACTGATTTTCCAGAAAGAGAACCTTCAGTGTCTGGTAGAAGGAAATCCTGTCGCGTAATTCAGAATTGCCATGGTTCTAGTAGTGGACGACTTAAGTCCAGTAACAAACTTGAAAAAGGATCATTAGCCGTAAATGTTTCAAGTGAAAATGGGAGCTGTTATGAGGCATCACGTTCTTGTATTGAACCTCAGCAAGATCCTGCTTCAGATGAAAGAGTCCCTCAAATGCTTACGCGTTCACAGTCAAAGACGGTCGCTACAAACAGAGTGGGACAAGTTTCTACAGATTGCAATGCTGAGTGTTCAACCAAGTCGAAAAAGGAATCCCATGAAGCGACAGAAAGTTTGAAGGAAATTGTCAGTCCAGCAATGGCTAAATTGCTAAACGAGCGCAGTTGTGAAAGGTGCAAATCTCTTGGGACTGAACTTGAGCAGGCAAAAGGAAAAATAGAAGAGTTGGAGAAAGAGCAATCGGCTTTCCTAGAAATAATAGTGCAAGAAAAGGCCGAGCGAGAACAAGAAGAGGAAAGATTAAGGAAAAGCCTAACGGATGCTTCTAACACGATCGGCAAGTTGCTTGAGAAGGTGAAAGAGCTAGAAGGAAGGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

781

Amino Acids

87.09

Weight (kDa)

6.68

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	186 - 281	9.8e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	187 - 266	8.7e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	416 - 561	2.2e-57	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccBSI	CCGCTC	1 cut(s)	1624
AccI	GTMKAC	1 cut(s)	1225
AccII	CGCG	4 cut(s)	198, 249, 1782, 1963
AccIII	TCCGGA	1 cut(s)	1393
AciI	CCGC	8 cut(s)	206, 230, 299, 345, 566, 970, 1545, 1624
AclWI	GGATC	3 cut(s)	1142, 1855, 1919
AcsI	RAATTY	1 cut(s)	1665
AcuI	CTGAAG	5 cut(s)	128, 1034, 1282, 1737, 1917
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	4 cut(s)	790, 898, 1081, 1726
AfiI	CCNNNNNNNGG	6 cut(s)	304, 471, 502, 547, 891, 1108
AflII	CTTAAG	1 cut(s)	1820
AflIII	ACRYGT	2 cut(s)	1082, 1961
AhlI	ACTAGT	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	7 cut(s)	560, 571, 1583, 1631, 1884, 2323, 2338
AluI	AGCT	7 cut(s)	560, 571, 1583, 1631, 1884, 2323, 2338
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	723, 1026
AlwI	GGATC	3 cut(s)	1142, 1855, 1919
AlwNI	CAGNNNCTG	1 cut(s)	1760
Aor13HI	TCCGGA	1 cut(s)	1393
AoxI	GGCC	5 cut(s)	3, 394, 606, 946, 2232
ApaI	GGGCCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	1665
ArsI	GACNNNNNNTTYG	2 cut(s)	2056, 2088
Asp700I	GAANNNNTTC	2 cut(s)	141, 1044
AspLEI	GCGC	3 cut(s)	14, 110, 2121
AspS9I	GGNCC	5 cut(s)	372, 394, 395, 493, 606
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	4 cut(s)	266, 458, 643, 2326
AvaII	GGWCC	2 cut(s)	372, 493
BaeGI	GKGCMC	1 cut(s)	398
BanII	GRGCYC	3 cut(s)	398, 553, 573
BbsI	GAAGAC	2 cut(s)	144, 856
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	1917
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	5 cut(s)	203, 641, 658, 836, 1195
BceAI	ACGGC	4 cut(s)	202, 286, 1504, 1841
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	1224
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	723, 1026
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	6 cut(s)	575, 786, 1646, 1806, 2210, 2324
BfmI	CTRYAG	3 cut(s)	1222, 2010, 2339
BfoI	RGCGCY	2 cut(s)	15, 111
BfrI	CTTAAG	1 cut(s)	1820
BfuI	GTATCC	1 cut(s)	1224
BglII	AGATCT	1 cut(s)	1042
BisI	GCNGC	3 cut(s)	85, 231, 1545
BlsI	GCNGC	3 cut(s)	86, 232, 1546
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	2 cut(s)	389, 398
Bme18I	GGWCC	2 cut(s)	372, 493
BmgT120I	GGNCC	5 cut(s)	372, 394, 395, 493, 606
BmiI	GGNNCC	4 cut(s)	373, 396, 607, 921
BmrFI	CCNGG	2 cut(s)	389, 398
BmsI	GCATC	7 cut(s)	211, 401, 957, 1274, 1447, 1904, 2269
BoxI	GACNNNNGTC	1 cut(s)	1822
BpiI	GAAGAC	2 cut(s)	144, 856
BpmI	CTGGAG	2 cut(s)	963, 1698
Bpu10I	CCTNAGC	1 cut(s)	1917
BpuEI	CTTGAG	2 cut(s)	2177, 2327
BpuMI	CCSGG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	1026
BsaJI	CCNNGG	4 cut(s)	315, 924, 1480, 1798
BsaWI	WCCGGW	2 cut(s)	374, 1393
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	6 cut(s)	304, 471, 502, 547, 891, 1108
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	7 cut(s)	111, 904, 992, 1131, 1685, 1715, 1827
Bse3DI	GCAATG	5 cut(s)	459, 607, 778, 2026, 2103
BseAI	TCCGGA	1 cut(s)	1393
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	4 cut(s)	315, 924, 1480, 1798
BseLI	CCNNNNNNNGG	6 cut(s)	304, 471, 502, 547, 891, 1108
BseMI	GCAATG	5 cut(s)	459, 607, 778, 2026, 2103
BseMII	CTCAG	3 cut(s)	1294, 1931, 2016
BseNI	ACTGG	7 cut(s)	111, 904, 992, 1131, 1685, 1715, 1827
BseRI	GAGGAG	1 cut(s)	1185
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	1034
Bsh1236I	CGCG	4 cut(s)	198, 249, 1782, 1963
Bsh1285I	CGRYCG	3 cut(s)	196, 1983, 2295
BshFI	GGCC	5 cut(s)	5, 396, 608, 948, 2234
BsiEI	CGRYCG	3 cut(s)	196, 1983, 2295
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	5 cut(s)	227, 275, 375, 398, 1394
BslFI	GGGAC	3 cut(s)	1931, 2013, 2161
BslI	CCNNNNNNNGG	6 cut(s)	304, 471, 502, 547, 891, 1108
BsmAI	GTCTC	2 cut(s)	723, 1026
BsmFI	GGGAC	3 cut(s)	1931, 2013, 2161
BsmI	GAATGC	1 cut(s)	1246
BsnI	GGCC	5 cut(s)	5, 396, 608, 948, 2234
Bso31I	GGTCTC	1 cut(s)	1026
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	398, 553, 573
Bsp13I	TCCGGA	1 cut(s)	1393
Bsp143I	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
Bsp19I	CCATGG	2 cut(s)	924, 1798
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	8 cut(s)	206, 230, 299, 345, 566, 970, 1545, 1624
BspANI	GGCC	5 cut(s)	5, 396, 608, 948, 2234
BspCNI	CTCAG	3 cut(s)	1293, 1930, 2017
BspEI	TCCGGA	1 cut(s)	1393
BspFNI	CGCG	4 cut(s)	198, 249, 1782, 1963
BspLI	GGNNCC	4 cut(s)	373, 396, 607, 921
BspPI	GGATC	3 cut(s)	1142, 1855, 1919
BspTI	CTTAAG	1 cut(s)	1820
BspTNI	GGTCTC	1 cut(s)	1026
BsrBI	CCGCTC	1 cut(s)	1624
BsrDI	GCAATG	5 cut(s)	459, 607, 778, 2026, 2103
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	7 cut(s)	111, 904, 992, 1131, 1685, 1715, 1827
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	4 cut(s)	315, 924, 1480, 1798
BssMI	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
BssNI	GRCGYC	1 cut(s)	692
BssT1I	CCWWGG	4 cut(s)	315, 924, 1480, 1798
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	9 cut(s)	254, 452, 680, 1212, 1223, 1404, 1702, 1971, 1981
Bst6I	CTCTTC	2 cut(s)	2175, 2244
BstACI	GRCGYC	1 cut(s)	692
BstAFI	CTTAAG	1 cut(s)	1820
BstBAI	YACGTR	1 cut(s)	1085
BstC8I	GCNNGC	5 cut(s)	345, 362, 416, 487, 2163
BstDEI	CTNAG	4 cut(s)	1000, 1280, 1917, 2025
BstDSI	CCRYGG	2 cut(s)	924, 1798
BstENI	CCTNNNNNAGG	2 cut(s)	889, 1106
BstFNI	CGCG	4 cut(s)	198, 249, 1782, 1963
BstH2I	RGCGCY	2 cut(s)	15, 111
BstHHI	GCGC	3 cut(s)	14, 110, 2121
BstKTI	GATC	6 cut(s)	196, 1045, 1150, 1850, 1927, 2295
BstMAI	GTCTC	2 cut(s)	723, 1026
BstMBI	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
BstMCI	CGRYCG	3 cut(s)	196, 1983, 2295
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 93, 195, 230, 239, 557, 2116
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	718
BstPAI	GACNNNNGTC	1 cut(s)	1822
BstSCI	CCNGG	2 cut(s)	387, 396
BstSFI	CTRYAG	3 cut(s)	1222, 2010, 2339
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	4 cut(s)	198, 249, 1782, 1963
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	144, 856
BstX2I	RGATCY	2 cut(s)	1042, 1924
BstXI	CCANNNNNNTGG	2 cut(s)	987, 1703
BstYI	RGATCY	2 cut(s)	1042, 1924
BsuI	GTATCC	1 cut(s)	1224
BsuRI	GGCC	5 cut(s)	5, 396, 608, 948, 2234
BtgI	CCRYGG	2 cut(s)	924, 1798
BtsI	GCAGTG	1 cut(s)	1022
BtsIMutI	CAGTG	4 cut(s)	457, 1022, 1143, 1761
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	5 cut(s)	345, 362, 416, 487, 2163
CaiI	CAGNNNCTG	1 cut(s)	1760
CfoI	GCGC	3 cut(s)	14, 110, 2121
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	5 cut(s)	372, 394, 395, 493, 606
CseI	GACGC	2 cut(s)	278, 700
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	4 cut(s)	789, 897, 1080, 1725
CspCI	CAANNNNNGTGG	2 cut(s)	1977, 2012
CviQI	GTAC	4 cut(s)	789, 897, 1080, 1725
DdeI	CTNAG	4 cut(s)	1000, 1280, 1917, 2025
DpnI	GATC	6 cut(s)	195, 1044, 1149, 1849, 1926, 2294
DpnII	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
DraI	TTTAAA	1 cut(s)	1069
Eam1104I	CTCTTC	2 cut(s)	2175, 2244
EarI	CTCTTC	2 cut(s)	2175, 2244
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	571
Eco130I	CCWWGG	4 cut(s)	315, 924, 1480, 1798
Eco24I	GRGCYC	3 cut(s)	398, 553, 573
Eco31I	GGTCTC	1 cut(s)	1026
Eco47I	GGWCC	2 cut(s)	372, 493
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	5 cut(s)	128, 1034, 1282, 1737, 1917
EcoICRI	GAGCTC	1 cut(s)	571
EcoNI	CCTNNNNNAGG	2 cut(s)	889, 1106
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	4 cut(s)	315, 924, 1480, 1798
EcoT22I	ATGCAT	2 cut(s)	716, 1267
EcoT38I	GRGCYC	3 cut(s)	398, 553, 573
ErhI	CCWWGG	4 cut(s)	315, 924, 1480, 1798
FalI	AAGNNNNNCTT	6 cut(s)	1029, 1061, 1032, 1064, 1735, 1767
FaqI	GGGAC	3 cut(s)	1931, 2013, 2161
FauI	CCCGC	3 cut(s)	306, 352, 963
FblI	GTMKAC	1 cut(s)	1225
Fnu4HI	GCNGC	3 cut(s)	85, 231, 1545
FriOI	GRGCYC	3 cut(s)	398, 553, 573
Fsp4HI	GCNGC	3 cut(s)	85, 231, 1545
FspBI	CTAG	6 cut(s)	575, 786, 1646, 1806, 2210, 2324
GlaI	GCGC	3 cut(s)	13, 109, 2120
GluI	GCNGC	3 cut(s)	85, 231, 1545
GsuI	CTGGAG	2 cut(s)	963, 1698
HaeII	RGCGCY	2 cut(s)	15, 111
HaeIII	GGCC	5 cut(s)	5, 396, 608, 948, 2234
HapII	CCGG	5 cut(s)	227, 275, 375, 398, 1394
HgaI	GACGC	2 cut(s)	278, 700
HhaI	GCGC	3 cut(s)	14, 110, 2121
Hin1I	GRCGYC	1 cut(s)	692
Hin6I	GCGC	3 cut(s)	12, 108, 2119
HinP1I	GCGC	3 cut(s)	12, 108, 2119
HincII	GTYRAC	3 cut(s)	19, 625, 1359
HindII	GTYRAC	3 cut(s)	19, 625, 1359
HinfI	GANTC	5 cut(s)	164, 1173, 1537, 1944, 2051
HpaI	GTTAAC	2 cut(s)	19, 1359
HpaII	CCGG	5 cut(s)	227, 275, 375, 398, 1394
HphI	GGTGA	4 cut(s)	266, 458, 643, 2326
Hpy166II	GTNNAC	7 cut(s)	19, 625, 1082, 1226, 1359, 1814, 1967
Hpy188I	TCNGA	8 cut(s)	40, 130, 147, 1200, 1301, 1671, 1791, 1936
Hpy188III	TCNNGA	6 cut(s)	197, 980, 1394, 1604, 1641, 1739
Hpy8I	GTNNAC	7 cut(s)	19, 625, 1082, 1226, 1359, 1814, 1967
Hpy99I	CGWCG	2 cut(s)	194, 254
HpyCH4III	ACNGT	9 cut(s)	254, 452, 680, 1212, 1223, 1404, 1702, 1971, 1981
HpyCH4IV	ACGT	5 cut(s)	21, 810, 1084, 1723, 1900
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 93, 195, 230, 239, 557, 2116
HpyF3I	CTNAG	4 cut(s)	1000, 1280, 1917, 2025
HpySE526I	ACGT	5 cut(s)	21, 810, 1084, 1723, 1900
Hsp92I	GRCGYC	1 cut(s)	692
HspAI	GCGC	3 cut(s)	12, 108, 2119
Kpn2I	TCCGGA	1 cut(s)	1393
KspAI	GTTAAC	2 cut(s)	19, 1359
Kzo9I	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
LmnI	GCTCC	7 cut(s)	229, 557, 568, 576, 803, 1717, 1881
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	7 cut(s)	211, 401, 957, 1274, 1447, 1904, 2269
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	6 cut(s)	575, 786, 1646, 1806, 2210, 2324
MaeII	ACGT	5 cut(s)	21, 810, 1084, 1723, 1900
MaeIII	GTNAC	5 cut(s)	169, 446, 1369, 1435, 1829
MalI	GATC	6 cut(s)	195, 1044, 1149, 1849, 1926, 2294
MbiI	CCGCTC	1 cut(s)	1624
MboI	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
MflI	RGATCY	2 cut(s)	1042, 1924
MhlI	GDGCHC	3 cut(s)	398, 553, 573
MluI	ACGCGT	1 cut(s)	1961
MlyI	GAGTC	2 cut(s)	1182, 1953
MmeI	TCCRAC	3 cut(s)	153, 285, 2166
Mph1103I	ATGCAT	2 cut(s)	716, 1267
MroI	TCCGGA	1 cut(s)	1393
MroXI	GAANNNNTTC	2 cut(s)	141, 1044
MslI	CAYNNNNRTG	6 cut(s)	528, 618, 869, 1199, 1473, 1557
MspA1I	CMGCKG	1 cut(s)	1631
MspCI	CTTAAG	1 cut(s)	1820
MspI	CCGG	5 cut(s)	227, 275, 375, 398, 1394
MspR9I	CCNGG	2 cut(s)	389, 398
Mva1269I	GAATGC	1 cut(s)	1246
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	4 cut(s)	198, 249, 1782, 1963
MwoI	GCNNNNNNNGC	7 cut(s)	11, 93, 195, 230, 239, 557, 2116
NciI	CCSGG	1 cut(s)	398
NcoI	CCATGG	2 cut(s)	924, 1798
NdeII	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
NlaIV	GGNNCC	4 cut(s)	373, 396, 607, 921
NmeAIII	GCCGAG	2 cut(s)	390, 2260
NmuCI	GTSAC	3 cut(s)	169, 446, 1435
NruI	TCGCGA	1 cut(s)	198
NsiI	ATGCAT	2 cut(s)	716, 1267
NspI	RCATGY	1 cut(s)	718
PctI	GAATGC	1 cut(s)	1246
PdmI	GAANNNNTTC	2 cut(s)	141, 1044
PfeI	GAWTC	3 cut(s)	164, 1537, 2051
PkrI	GCNGC	3 cut(s)	86, 232, 1546
Ple19I	CGATCG	2 cut(s)	196, 2295
PleI	GAGTC	2 cut(s)	1181, 1952
PpsI	GAGTC	2 cut(s)	1181, 1952
Ppu21I	YACGTR	1 cut(s)	1085
PshAI	GACNNNNGTC	1 cut(s)	1822
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	373, 396, 607, 921
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	5 cut(s)	372, 394, 395, 493, 606
PsrI	GAACNNNNNNTAC	2 cut(s)	97, 129
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	2 cut(s)	1042, 1924
PvuI	CGATCG	2 cut(s)	196, 2295
PvuII	CAGCTG	1 cut(s)	1631
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	4 cut(s)	790, 898, 1081, 1726
RsaNI	GTAC	4 cut(s)	789, 897, 1080, 1725
RseI	CAYNNNNRTG	6 cut(s)	528, 618, 869, 1199, 1473, 1557
SacI	GAGCTC	1 cut(s)	573
SatI	GCNGC	3 cut(s)	85, 231, 1545
Sau3AI	GATC	6 cut(s)	193, 1042, 1147, 1847, 1924, 2292
Sau96I	GGNCC	5 cut(s)	372, 394, 395, 493, 606
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	2 cut(s)	1182, 1953
ScrFI	CCNGG	2 cut(s)	389, 398
SduI	GDGCHC	3 cut(s)	398, 553, 573
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	7 cut(s)	211, 401, 957, 1274, 1447, 1904, 2269
SfcI	CTRYAG	3 cut(s)	1222, 2010, 2339
SinI	GGWCC	2 cut(s)	372, 493
SmiMI	CAYNNNNRTG	6 cut(s)	528, 618, 869, 1199, 1473, 1557
SmlI	CTYRAG	3 cut(s)	1820, 2156, 2306
SmoI	CTYRAG	3 cut(s)	1820, 2156, 2306
SpeI	ACTAGT	1 cut(s)	785
SsiI	CCGC	8 cut(s)	206, 230, 299, 345, 566, 970, 1545, 1624
SspMI	CTAG	6 cut(s)	575, 786, 1646, 1806, 2210, 2324
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	387, 396
StyI	CCWWGG	4 cut(s)	315, 924, 1480, 1798
TaaI	ACNGT	9 cut(s)	254, 452, 680, 1212, 1223, 1404, 1702, 1971, 1981
TaiI	ACGT	5 cut(s)	24, 813, 1087, 1726, 1903
TaqI	TCGA	6 cut(s)	135, 162, 350, 1140, 1507, 2042
TaqII	GACCGA	1 cut(s)	868
TatI	WGTACW	1 cut(s)	788
TauI	GCSGC	2 cut(s)	233, 1547
TfiI	GAWTC	3 cut(s)	164, 1537, 2051
TscAI	CASTG	4 cut(s)	457, 1022, 1150, 1761
TseFI	GTSAC	3 cut(s)	169, 446, 1435
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	3 cut(s)	169, 446, 1435
TspDTI	ATGAA	5 cut(s)	497, 1131, 1239, 1953, 2073
TspGWI	ACGGA	3 cut(s)	106, 157, 2291
TspRI	CASTG	4 cut(s)	457, 1022, 1150, 1761
Vha464I	CTTAAG	1 cut(s)	1820
VpaK11BI	GGWCC	2 cut(s)	372, 493
XagI	CCTNNNNNAGG	2 cut(s)	889, 1106
XapI	RAATTY	1 cut(s)	1665
XceI	RCATGY	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	1225
XmnI	GAANNNNTTC	2 cut(s)	141, 1044
XspI	CTAG	6 cut(s)	575, 786, 1646, 1806, 2210, 2324
ZrmI	AGTACT	1 cut(s)	790
Zsp2I	ATGCAT	2 cut(s)	716, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.